Whitman Center Publications

Alavian, KN; Dworetzky, SI; Bonanni, L; Zhang, P; Sacchetti, S; Mariggio, MA; Onofrj, M; Thomas, A; Li, H; Mangold, JE; Signore, AP; Demarco, U; Demady, DR; Nabili, P; Lazrove, E; Smith, PJS; Gribkoff, VK; Jonas, EA. 2012. Effects of Dexpramipexole on Brain Mitochondrial Conductances and Cellular Bioenergetic Efficiency. Brain Research (1446): 1-11.

Albertin, CB; Bonnaud, L; Brown, CT; Crookes-Goodson, WJ; da Fonseca, RR; Di Cristo, C; Dilkes, BP; Edsinger-Gonzales, E; Freeman, RM; Hanlon, RT; Koenig, KM; Lindgren, AR; Martindale, MQ; Minx, P; Moroz, LL; Nödl, M-T; Nyholm, SV; Ogura, A; Pungor, JR; Rosenthal, JJC; Schwarz, EM; Shigeno, S; Strugnell, JM; Wollesen, T; Zhang, G; Ragsdale, CW. 2012. Cephalopod Genomics: A Plan of Strategies and Organization. Standards in Genomic Sciences (7): 175-188.

Angueyra, JM; Pulido, C; Malagón, G; Nasi, E; Gomez, MDP. 2012. Melanopsin-expressing Amphioxus Photoreceptors Transduce Light via a Phospholipase C Signaling Cascade. PloS one (7): e29813.

Atamna-Ismaeel, N; Finkel, OM; Glaser, F; Sharon, I; Schneider, R; Post, AF; Spudich, JL; von Mering, C; Vorholt, JA; Iluz, D; Béjà, O; Belkin, S. 2012. Microbial Rhodopsins on Leaf Surfaces of Terrestrial Plants. Environmental microbiology (14): 140-146.

Atilgan, E; Burgess, D; Chang, F. 2012. Localization of Cytokinesis Factors to the Future Cell Division Site by Microtubule-dependent Transport. Cytoskeleton (Hoboken, NJ) (69): 973-982.

Berberián, G; Podjarny, A; DiPolo, R; Beaugé, L. 2012. Metabolic Regulation of the Squid Nerve Na⁺/Ca²⁺ Exchanger: Recent Kinetic, Biochemical and Structural Developments. Progress in Biophysics and Molecular Biology (108): 47-63.

Birk, MA; Ulmer, KM; Chiao, C-C; Chubb, C; Siemann, L; Hanlon, RT. 2012. Cuttlefish camouflage: using visual psychophysics approach with grayscale disk patterns to examine disruptive body patterning.  Integrative and Comparative Biology (52):  E212.

Christensen-Dalsgaard, J; Brandt, C; Willis, KL; Christensen, CB; Ketten, D; Edds-Walton, P; Fay, RR; Madsen, PT; Carr, CE. 2012. Specialization for underwater hearing by the tympanic middle ear of the turtle, Trachemys scripta elegans. Proceedings. Biological Sciences / The Royal Society (279): 2816-2824.

Das, M; Drake, T; Wiley, DJ; Buchwald, P; Vavylonis, D; Verde, F. 2012. Oscillatory Dynamics of Cdc42 GTPase in the Control of Polarized Growth. Science (New York, N.Y.) (337): 239-243.

Davidson, EA; David, MB; Galloway, JN; Goodale, CL; Haeuber, R; Harrison, JA; Howarth, RW; Jaynes, DB; Lowrance, RR; Nolan, BT; Peel, JL; Pinder, RW; Porter, E; Snyder, CS. 2012. Excess Nitrogen in the U.S. Environment: Trends, Risks, and Solutions Issues in Ecology.

Eisthen, HL; Krause, BC. 2012. Ambiguities in the Relationship Between Gonadal Steroids and Reproduction in Axolotls (Ambystoma mexicanum). General and Comparative Endocrinology (176): 472-480.

Fay, RR. 2012. Listening in Noise. Advances in Experimental Medicine and Biology, edited, pp. 129-134.

Fay, RR; Popper, AN. 2012. Fish Hearing: New Perspectives From Two ‘Senior’ Bioacousticians. Brain, Behavior, and Evolution (79): 215-217.

Ferrer, C; Malagón, G; Gomez, MDP; Nasi, E. 2012. Dissecting the Determinants of Light Sensitivity in Amphioxus Microvillar Photoreceptors: Possible Evolutionary Implications for Melanopsin Signaling. The Journal of Neuroscience : The Official Journal of the Society for Neuroscience (32): 17977-17987.

Gadsby, DC; Bezanilla, F; Rakowski, RF; De Weer, P; Holmgren, M. 2012. The Dynamic Relationships Between the Three Events That Release Individual Na⁺ ions From the Na⁺/K⁺-ATPase. Nature communications (3): 669.

Gerstenberger, JP; Occhipinti, P; Gladfelter, AS. 2012. Heterogeneity in Mitochondrial Morphology and Membrane Potential is Independent of the Nuclear Division Cycle in Multinucleate Fungal Cells. Eukaryotic cell (11): 353-367.

Gillis, JA; Fritzenwanker, JH; Lowe, CJ. 2012. A Stem-deuterostome Origin of the Vertebrate Pharyngeal Transcriptional Network. Proceedings. Biological Sciences / The Royal Society (279): 237-246.

Gillis, JA; Modrell, MS; Northcutt, RG; Catania, KC; Luer, CA; Baker, CVH. 2012. Electrosensory Ampullary Organs are Derived From Lateral Line Placodes in Cartilaginous Fishes. Development (Cambridge, England) (139): 3142-3146.

Gudejko, HFM; Alford, LM; Burgess, DR. 2012. Polar Expansion During Cytokinesis. Cytoskeleton (Hoboken, NJ) (69): 1000-1009.

Jacobs, M; Laufer, H; Stuart, J; Chen, M; Pan, X. 2012. Endocrine-Disrupting Alkylphenols are Widespread in the Blood of Lobsters from Southern New England and Adjacent Offshore Areas. Journal of Shellfish Research (31): 563-571.

Jacoby, J; Kreitzer, MA; Alford, S; Qian, H; Tchernookova, BK; Naylor, ER; Malchow, RP. 2012. Extracellular pH Dynamics of Retinal Horizontal Cells Examined Using Electrochemical and Fluorometric Mmethods. Journal of Neurophysiology (107): 868-879.

Jeffery, WR. 2012. Siphon Regeneration Capacity is Compromised During Aging in the Ascidian Ciona intestinalis. Mechanisms of Aging and Development (133): 629-636.

Kanaan, NM; Morfini, G; Pigino, G; LaPointe, NE; Andreadis, A; Song, Y; Leitman, E; Binder, LI; Brady, ST. 2012. Phosphorylation in the Amino Terminus of Tau Prevents Inhibition of Anterograde Axonal Transport. Neurobiology of Aging (33): 826.e815-830.

Kashikar, ND; Alvarez, L; Seifert, R; Gregor, I; Jäckle, O; Beyermann, M; Krause, E; Kaupp, UB. 2012. Temporal Sampling, Resetting, and Adaptation Orchestrate Gradient Sensing in Sperm. The Journal of Cell Biology (198): 1075-1091.

Kreitzer, MA; Jacoby, J; Naylor, E; Baker, A; Grable, T; Tran, E; Booth, SE; Qian, H; Malchow, RP. 2012. Distinctive Patterns of Alterations in Proton Efflux From Goldfish Retinal Horizontal Cells Monitored with Self-referencing H⁺-selective Electrodes. The European journal of neuroscience (36): 3040-3050.

Laan, L; Pavin, N; Husson, J; Romet-Lemonne, G; van Duijn, M; López, MP; Vale, RD; Jülicher, F; Reck-Peterson, SL; Dogterom, M. 2012. Cortical Dynein Controls Microtubule Ddynamics to Generate Pulling Forces That Position Microtubule Asters. Cell (148): 502-514.

Laufer, H; Baclaski, B; Koehn, U. 2012. Alkylphenols Affect Lobster (Homarus americanus) Larval Survival, Molting and Metamorphosis Invertebrate Reproduction & Development (56): 66-71.

Laufer, H; Chen, M; Johnson, M; Demir, N; Bobbitt, JM. 2012. The Effect of Alkylphenols on Lobster Shell Hardening Journal of Shellfish Research (31): 555-562.

Liebeskind, BJ; Hillis, DM; Zakon, HH. 2012. Phylogeny Unites Animal Sodium Leak Channels With Fungal Calcium Channels in an Ancient, Voltage-insensitive Clade. Molecular Biology and Evolution (29): 3613-3616.

Lisman, J; Yasuda, R; Raghavachari, S. 2012. Mechanisms of CaMKII Action in Long-term Potentiation. Nature reviews. Neuroscience (13): 169-182.

Liu, Q; Dai, M; Chen, W; Huh, C-A; Wang, G; Li, Q; Charette, MA. 2012. How Significant is Submarine Groundwater Discharge and its Associated Dissolved Inorganic Carbon in a River-dominated Shelf System? Biogeosciences (9): 1777-1795.

Mackey, KRM; Roberts, K; Lomas, MW; Saito, MA; Post, AF; Paytan, A. 2012. Enhanced Solubility and Ecological Impact of Atmospheric Phosphorus Deposition Upon Extended Seawater Exposure. Environmental Science & Technology (46): 10438-10446.

Manley, GA; Narins, PM; Fay, RR. 2012. Experiments in Comparative Hearing: Georg von Békésy and Beyond. Hearing Research (293): 44-50.

Meseroll, RA; Howard, L; Gladfelter, AS. 2012. Septin Ring Size Scaling and Dynamics Require the Coiled-coil Region of Shs1p. Molecular Biology of the Cell (23): 3391-3406.

Meseroll, RA; Occhipinti, P; Gladfelter, AS. 2013. Septin Phosphorylation and Coiled-coil Domains Ffunction in Cell and Septin Ring Morphology in the Filamentous Fungus ashbya gossypii. Eukaryotic cell (12): 182-193.

Miniowitz-Shemtov, S; Eytan, E; Ganoth, D; Sitry-Shevah, D; Dumin, E; Hershko, A. 2012. Role of Pphosphorylation of Cdc20 in p31(comet)-stimulated Disassembly of the Mitotic Checkpoint Complex. Proceedings of the National Academy of Sciences of the United States of America (109): 8056-8060.

Mitchison, T; Wühr, M; Nguyen, P; Ishihara, K; Groen, A; Field, CM. 2012. Growth, Interaction, and Positioning of Microtubule Asters in Extremely Large Vertebrate Embryo Cells. Cytoskeleton (Hoboken, NJ) (69): 738-750.

Miyazaki, K; Manita, S; Ross, WN. 2012. Developmental Profile of Localized Spontaneous Ca(2+) Release Events in the Dendrites of Rat Hippocampal Pyramidal Neurons. Cell calcium (52): 422-432.

Mooney, TA; Hanlon, R; Madsen, PT; Christensen-Dalsgaard, J; Ketten, DR; Nachtigall, PE. 2012. Potential for sound sensitivity in cephalopods., in Advances in experimental medicine and biology, edited, pp. 125-128.

Pethig, R; Schmueser, I. 2012. Marking 100 Years Since Rudolf Höber’s Discovery of the Insulating Envelope Surrounding Cells and of the Beta-dispersion Exhibited by Tissue. Journal of Electrical Bioimpedance (3).

Post, AF; Rihtman, B; Wang, Q. 2012. Decoupling of Ammonium Regulation and ntcA Transcription in the Diazotrophic Marine Cyanobacterium Trichodesmium sp. IMS101. The ISME journal (6): 629-637.

Pulido, C; Malagón, G; Ferrer, C; Chen, JK; Angueyra, JM; Nasi, E; Gomez, MdP. 2012. The Light-Sensitive Conductance of Melanopsin-expressing Joseph and Hesse Cells in Amphioxus. The Journal of General Physiology (139): 19-30.

Ramirez, J; Hernandez, A; Pinzon, A; Nasi, E; Del Pilar Gomez, M. 2012. Melanopsin Expression Confers Light Sensitivity to Neurons of the Outer Nuclear Layer in the Avian Retina. Journal of General Physiology (140).

Ripps, H; Shen, W. 2012. Review: Taurine: A “Very Essential” Amino Acid. Molecular Vision (18): 2673-2686.

Ross, WN. 2012. Understanding Calcium Waves and Sparks in Central Neurons. Nature reviews. Neuroscience (13): 157-168.

Santhanakrishnan, A; Dollinger, M; Hamlet, CL; Colin, SP; Miller, LA. 2012. Flow Structure and Transport Characteristics of Feeding and Exchange Currents Generated by Upside-down Cassiopea Jellyfish. The Journal of Experimental Biology (215): 2369-2381.

Seamster, PE; Loewenberg, M; Pascal, J; Chauviere, A; Gonzales, A; Cristini, V; Bearer, EL. 2012. Quantitative Measurements and Modeling of Cargo-motor Interactions During Fast Transport in the Living Axon. Physical biology (9): 055005.

Strobel, SM; Mooney, TA. 2012. Detection of Low-frequency Tones and Whale Predator Sounds by the American Sand Lance Ammodytes americanus. Journal of Fish Biology (81): 1646-1664.

Sukenik, A; Kaplan-Levy, RN; Welch, JM; Post, AF. 2012. Massive Multiplication of Genome and Ribosomes in Dormant Cells (Akinetes) of Aphanizomenon ovalisporum (Cyanobacteria). The ISME Journal (6): 670-679.

Tamm, SL. 2012. Regeneration of Ciliary Comb Plates in the Ctenophore Mnemiopsis leidyi. i. morphology. Journal of morphology (273): 109-120.

Tamm, SL. 2012. Patterns of Comb Row Development in Young and Adult Stages of the Ctenophores Mnemiopsis leidyi and Pleurobrachia pileus. Journal of morphology (273): 1050-1063.

Vale, RD; DeRisi, J; Phillips, R; Mullins, RD; Waterman, C; Mitchison, TJ. 2012. Interdisciplinary Graduate Training in Teaching Labs. Science (338): 1542-1543.

Webb, SE; Cheung, CCY; Chan, CM; Love, DR; Miller, AL. 2012. Application of Complementary Luminescent and Fluorescent Imaging Techniques to Visualize Nuclear and Cytoplasmic Ca²⁺ Signalling During the in vivo Differentiation of Slow Muscle Cells in Zebrafish Embryos Under Normal and Dystrophic Conditions. Clinical and Experimental Pharmacology & Physiology (39): 78-86.

Webb, SE; Miller, AL. 2012. Aequorin-based Genetic Approaches to Visualize Ca2+ Signaling in Developing Animal Systems. Biochimica et biophysica acta (1820): 1160-1168.

Yager, P; Sherrell, R; Stammerjohn, S; Alderkamp, A-C; Schofield, O; Abrahamsen, P; Arrigo, K; Bertilsson, S; Garay, L; Guerrero, R; Lowry, K; Moksnes, P-O; Ndungo, K; Post, A; Randall-Goodwin, E; Riemann, L; Severmann, S; Thatje, S; van Dijken, G; Wilson, S. 2012. ASPIRE: The Amundsen Sea Polynya International Research Expedition. Oceanography (25): 40-53.

Zakon, HH. 2012. Adaptive Evolution of Voltage-gated Sodium Channels: The First 800 Million Years. Proceedings of the National Academy of Sciences of the United States of America (109 Suppl): 10619-10625.

Zeddies, DG; Fay, RR; Gray, MD; Alderks, PW; Acob, A; Sisneros, JA. 2012. Local Acoustic Particle Motion Guides Sound-source Localization Behavior in the Plainfin Midshipman Fish, Porichthys notatus. The Journal of Experimental Biology (215): 152-160.

Zottoli, SJ. 2012. How the Early Voltage Clamp Studies of José del Castillo Inform “Modern” Neuroscience. The Neuroscientist: A review journal bringing neurobiology, neurology and psychiatry (18): 415-421.