2017 Publications

Peer-Reviewed Journal Articles

Akkaynak, D., Siemann, L.A., Barbosa, A., and Mäthger, L.M. 2017. Changeable camouflage: how well can flounder resemble the colour and spatial scale of substrates in their natural habitats? Royal Society Open Science 4, 160824. doi:

Allen, J.J., Akkaynak, D., Schnell, A., and Hanlon, R.T. 2017. Dramatic fighting by male cuttlefish for a female mate. American Naturalist 190 (1), 144-151. doi: 10.1086/692009

Chandler, T., Mehta, S., Shroff, H., Oldenbourg, R., and La Riviere, P.J. 2017. Single-fluorophore orientation determination with multiview polarized illumination: modeling and microscope design. Optics Express 25(25), 31309-31325. doi: org/10.1364/OE.25.031309

Ferrick-Kiddie, E.A., Rosenthal, J.J.C., Ayers, G.D., and Emeson, R.B. 2017. Mutations underlying Episodic Ataxia type-1 antagonize Kv1.1 RNA editing. Scientific Reports 7, 41095. doi: 10.1038/srep41095

Gibaud, T., Kaplan, C.N., Sharma, P., Zakhary, M.J., Ward, A., Oldenbourg, R., Meyer, R.B., Kamien, R.D., Powers, T.R., and Dogic, Z. 2017. Achiral symmetry breaking and positive Gaussian modulus lead to scalloped colloidal membranes. Proceedings of the National Academy of Sciences of the United States of America (PNAS) 114, E3376-E3384. doi: 10.1073/pnas.1617043114

Hanlon, R.T., Mäthger, L.M., Bell, G.R.R., Kuzirian, A.M., and Senft, S.L. 2017. White reflection from cuttlefish skin leucophores. Bioinspiration and Biomimetics. doi: 10.1088/1748-3190/aaa3a9

Imai, R., Nozaki, T., Tani, T., Kaizu, K., Hibino, K. Ide, S., Tamura, S., Takahashi, K., Shribak, M., and Maeshima, K. 2017. Density imaging of heterochromatin in live cells using orientation-independent-DIC microscopy. Molecular Biology of the Cell. doi: 10.1091/mbc.E17-06-0359

Keikhosravi, A., Liu, Y., Drifka, C., Woo, K.M., Verma, A., Oldenbourg, R. and Eliceiri, K.W. 2017. Quantification of collagen organization in histopathology samples using liquid crystal based polarization microscopy. Biomedical Optics Express 8(9), 4243-4256. doi: org/10.1364/BOE.8.004243

Kim, S.Y., Arai, Y., Tani, T., Takatsuka, H., Saito, Y., Kawashima, T., Kawakami, S., Miyawaki, A., and Nagai, T. 2017. Simultaneous imaging of multiple cellular events using high-accuracy fluorescence polarization microscopy.  Microscopy (Oxford, England) 66(2), 110-119. doi: org/10.1093/jmicro/dfw110

Liscovitch-Brauer, N., Alon, S., Porath, H.T., Elstein, B., Unger, R., Ziv, T., Admon, A., Levanon, E.Y., Rosenthal, J.J.C., and Eisenberg, E. 2017. Trade-off between transcriptome plasticity and genome evolution in cephalopods. Cell 169, 191-202. doi: 10.1016/j.cell.2017.03.025

McQuilken, M., Jentzsch, M.S., Verma, A., Mehta, S.B., Oldenbourg, R., and Gladfelter, A.S. 2017. Analysis of septin reorganization at cytokinesis using polarized fluorescence microscopy. Frontiers in Cell Developmental Biology 5, 42. doi: org/10.3389/fcell.2017.00042

Medeiros, A.T., Soll, L.G., Tessari, I., Bubacco, L., and Morgan, J.R. 2017. α-Synuclein dimers impair vesicle fission during clathrin-mediated synaptic vesicle endocytosis. Frontiers in Cellular Neuroscience 11, 388. doi: 10.3389/fncel.2017.00388

Nordenfelt, P., Moore, T.I. Mehta, S.B., Kalappurakkal, J.M, Swaminathan, V., Koga, N., Lambert, T.J., Baker, D., Waters, J.C., Oldenbourg, R., Tani, T., Mayor, S., Waterman, C.M., and Springer, T.A. 2017. Direction of actin flow dictates integrin LFA-1 orientation during leukocyte migration. Nature Communications 8(1), 20147. doi: 10.1038/s41467-017-01848-y

Nozaki, T., Imai, R., Tanbo, M., Nagashima, R., Tamura, S., Tani, T., Joti, Y., Tomita, M., Hibino, K., Kanemaki, M.T., Wendt, K.S., Okada, Y., Nagai, T., and Maeshima, K. 2017. Dynamic organization of chromatin domains revealed by super-resolution live-cell imaging. Molecular Cell 67(2), 282-293.e7. doi: 10.1016/j.molcel.2017.06.018

Panetta, D., Buresch, K., and Hanlon, R.T. 2017. Dynamic masquerade with morphing 3D skin in cuttlefish. Biology Letters 13, 20170070. doi: 10.1575/1912/8678

Panetta, D., Solomon, M., Buresch, K., and Hanlon, R.T. 2017. Small-scale rearing of cuttlefish (Sepia officinalis) for research purposes. Marine and Freshwater Behaviour and Physiology. doi: 10.1080/10236244.2017.1343631

Pearl, E., Morrow, S., Noble, A., Lerebours, A., Horb, M., and Guille, M. 2017. An optimized method for cryogenic storage of Xenopus sperm to maximise the effectiveness of research using genetically altered frogs. Theriogenology. 92, 149-155. (PubMed)

Pikul, J.H., Li, S., Bai, H., Hanlon, R.T., Cohen, I., and Shepherd, R.F. 2017. Stretchable surfaces with programmable 3-D texture morphing for synthetic camouflaging skins. Science 358, 210-214.

Porath, H.T., Schaffer, A., Kaniewska, P., Alon, S., Eisenberg, E., Rosenthal, J., Levanon, E.Y., and Levy, O. 2017. A-to-I RNA editing in the earliest-diverging eumetazoan phyla. Molecular Biology and Evolution 34, 1890-1901. (PubMed)

Ratzan, W., Falco, R., Salanga, C., Salanga, M., and Horb, M.E. 2017. Generation of a Xenopus laevis F1 albino J strain by genome editing and oocyte host transfer. Developmental Biology 426, 188-193. (PubMed)

Savova, V., Pearl, E.J., Boke, E., Nag, A., Adzhubei, I., Horb, M.E., and Peshkin, L. 2017. Transcriptomic insights into genetic diversity of protein-coding genes in X. laevis. Developmental Biology 424, 181-188. (PubMed)

Shribak, M., Larkin, K., and Biggs, D. 2017. Mapping of optical path length and image enhancement using orientation-independent differential interference contrast microscopy. Journal of Biomedical Optics 22 (1), 16006. doi: 10.1117/1.JBO.22.1.016006

Spira, F., Cuylen-Haering, S., Mehta, S., Samwer, M., Reversat, A., Verma, A., Oldenbourg, R., Sixt, M., and Gerlich, D.W. 2017. Cytokinesis in vertebrate cells initiates by contraction of an equatorial actomyosin network composed of randomly oriented filaments. eLife 6, e30867. doi: org/10.7554/eLife.30867

Swaminathan, V., Kalappurakkal, J.M., Mehta, S.B., Nordenfelt, P., Moore, T.I., Koga, N., Baker, D.A., Oldenbourg, R., Tani, T., Mayor, S., Springer, T.A., and Waterman, C.M. 2017. Actin retrograde flow actively aligns and orients ligand-engaged integrins in focal adhesions. Proceedings of the National Academy of Sciences of the United States of America (PNAS) 114(40), 10648-10653. doi: 10.1073/pnas.1701136114

Tandon, P., Conlon, F., Furlow, D., and Horb, M.E. 2017. Expanding the genetic toolkit in Xenopus: approaches and opportunities for human disease modeling. Developmental Biology 426, 325-335. (PubMed)

Tkacz, R., Abedin, M.J., Sheath, P., Mehta, S.B., Verma, A., Oldenbourg, R. and Majumder, M. 2017. Phase transition and liquid crystalline organization of colloidal graphene oxide as a function of pH. Particle & Particle Systems Characterization 34(9), 1600391. doi: org/10.1002/ppsc.201600391

Toledo-Hernández, C., Ruiz-Diaz, C.P., Díaz-Vázquez, L.M., Santiago, V., Rosario-Berrios, D.N., García-Almedina, D.M, and Roberson, L.M. 2017. Comparison of chemical compounds associated with sclerites from healthy and diseased sea fan corals (Gorgonia ventalina). PeerJ 5:e3677 doi: org/10.7717/peerj.3677

Vallecillo-Viejo, I., Liscovitch-Brauer, N., Montiel-Gonzalez, M.F., Eisenberg, E., and Rosenthal, J.J.C. 2017. Abundant off-target edits from site-directed RNA editing can be reduced by nuclear localization of the editing enzyme. RNA Biology. Epub 2017 Nov 13.

Webb, B.D., Metikala, S., Wheeler, P.G., Sherpa, M.D., Houten, S.M., Horb, M.E., and Schadt, E.E. 2017. Heterozygous pathogenic variant in Dact1 causes an autosomal dominant syndrome with features overlapping Townes-Brocks syndrome. Human Mutation 38, 373-377. (PubMed)

Wlizla, M., Falco, R., Parlow, A.F., and Horb, M.E. 2017. Luteinizing Hormone is an effective replacement for hCG to induce ovulation in Xenopus. Developmental Biology 426, 442-448. doi: 10.1016/j.ydbio.2016.05.028

Books and Book Chapters

Hanlon, R.T., and Messenger, J.B. 2017. Cephalopod Behaviour. 2nd edition. Cambridge University Press. 365pp.

MacCord, K., and Maienschein, J. 2017. Cells, development, and evolution: Teeth at the intersection of fields. In: R. Delisle (ed.), The Darwinian Tradition in Context: Research Programs in Twentieth-Century Evolutionary Biology, Springer.

Maienschein J. 2017. The first century of cell theory: From structural units to complex living systems. In: Stadler F. (eds.), Integrated History and Philosophy of Science. Vienna Circle Institute Yearbook (Institute Vienna Circle, University of Vienna, Vienna Circle Society, Society for the Advancement of Scientific World Conceptions), vol 20. Springer, Cham.

Maienschein, J., and MacCord, K. 2017. Changing conceptions of human nature. In: J. Robert, E. Finn, and D. Guston (eds.), Frankenstein, MIT Press, Boston.

Minteer, B.A., Maienschein, J., and Collins, J.P., eds. The Ark and Beyond: The Evolution of Zoo and Aquarium Conservation, University of Chicago Press, Chicago.

Morgan, J.R. 2017.  Ch. 22:  Spinal cord repair and regeneration. 2017. In: Gardiner, D. (ed.), Regenerative Engineering and Developmental Biology:  Principles and Applications.  CRC Press, Taylor & Francis Group, LLC; Boca Raton, FL. p. 477-497.