2013

Recent Publications, 2013

Bilandžija, H., Ma L, Parkhurst, A., and W. R. Jeffery (2013). A potential benefit of albinism in Astyanax cavefish:  Downregulation of the oca2 gene increases L-tyrosine and catecholamine levels as an alternative to melanin synthesis.  PLoS ONE 8 (11): e80823. Doi: 10.1371/journal.pone.0080823

Chowanadisai, W; Graham, DM; Keen, CL; Rucker RB; Messerli, MA (2013). A zinc transporter gene required for development of the nervous system. Commun. Int. Biol. 2013: 6:e26207

Chowanadisai, W; Graham, DM; Keen, CL; Rucker, RB and Messerli, MA (2013). Neurulation and neurite extension require the zinc transporter ZIP12 (slc39a12) Proc. Natl. Acad. Sci. USA 2013 110: 9903-9908.

Graham, DM; Huang, L; Robinson, KR;  and Messerli, MA (2013). Epidermal keratinocyte polarity and motility require Ca2+ influx through TRPV1. J. Cell Sci. 126:4602-4613. July 2013. http://dx.doi.org/10.1242/jcs.122192

Helm, R. R., Siebert, S., Tulin, S., Smith, J., Dunn, C. Characterization of differential transcript abundance through time during Nematostella vectensis development.  BMC Genomics.14(1):266, 2013. http://www.ncbi.nlm.nih.gov/pubmed/23601508

Hinaux, H., Poulain, J. Da Silva, C., Noirot, C., Jeffery, W. R., Casane, D., and S. Retaux (2013). De novo sequencing of Astyanax mexicanus surface fish and Pachon cavefish transcriptomes reveals enrichment of mutations in putative cavefish eye genes. PLoS ONE 8(1): e53553. doi:10.1371/journal.pone.0053553.s

Jeffery, W. R. The tunicate Ciona: a model system for studying the relationship between regeneration and aging. (accepted for publication in Invertebrate Reproduction & Development).

Kowalko J. E., Rohner, N., Linden, T. A., Rompani, S. B., Warren, W. C, Borowsky, R., Tabin C. J., Jeffery, W. R., and M. Yoshizawa (2013). Convergence in feeding posture occurs through different genetic loci in independently evolved cave populations of Astyanax mexicanus.  Proc. Natl. Acad. Sci. USA 110 (42)  16933-16938.  doi:10.1073/pnas.1317192110

Kowalko, J. E., Rohner, N., Rompani, S. B., Peterson, B. K., Linden, T., Yoshizawa, M., Kay E. H., Hoekstra H. E., Jeffery, W. R., Borowsky, R., and C. J. Tabin (2013). Genetic analysis of the loss of schooling behavior in cavefish reveals both sight-dependent and independent mechanisms. Curr, Biol. 23: 1874-1883. doi: 10.1016/j.cub.2013.07.056

Lau BY, Fogerson SM, Walsh RB, Morgan J.R. Cyclic AMP promotes axon regeneration, lesion repair and neuronal survival in lampreys after spinal cord injury. Exp Neurol. 2013. Volume 250, December 2013, Pages 31–42. http://www.ncbi.nlm.nih.gov/pubmed/24041988

Laubichler, M., Maienschein, J. and Juergen Renn, “Computational Perspectives in the History of Science: To the Memory of Peter Damerow,” Isis. 2013. 104:119-130.

Laubichler, M., Maienschein, J. Developmental Evolution, in Michael Ruse, editor, Darwin Encyclopedia  (Cambridge University Press, 2013), pp. 375-382.

Maienschein, J. Stem cell research utilizing embryonic tissue SHOULD be conducted,  with response, in Arthur Caplan and Robert Arp, editors, Contemporary Debates in Bioethics (Wiley-Blackwell, 2013), pp. 237-247.

Maienschein, J. “Finding Goodness Among Ought and Is Debates in Stem Cell Research,” in Victorio Hösle, editor, Dimensions of Goodness (Cambridge Scholar Publishers, 2013), pp. 225-242.

Materna, S., Swartz, S. and Smith, J. Notch and Nodal control forkhead factor expression in the specification of multipotent progenitors in sea urchin. Development. 140(8):1796-806, (2013). http://www.ncbi.nlm.nih.gov/pubmed/23533178

Morgan J.R., Comstra HS, Cohen M, Faundez V. Presynaptic membrane retrieval and endosome biology: defining molecularly heterogeneous synaptic vesicles. Cold Spring Harbor Perspect Biol. (2013) Oct 1;5(10)PubMed PMID: 24086045.

Morgan J.R., Jiang J, Oliphint PA, Jin S, Gimenez LE, Busch DJ, Foldes AE, Zuo Y, Sousa R, Lafer EM.  Role for an Hsp70 nucleotide exchange factor in the regulation of synaptic vesicle endocytosis (2013).  Journal of Neuroscience.  33:8009-8021.

O’ Quin, K. E., Yoshizawa, M., Doshi, P., and W. R. Jeffery (2013).  Quantitative genetic analysis of retinal degeneration in the blind cavefish. PLoS ONE 8(2): e57281. doi:10.1371/journal.pone.0057281.

Rohner H, Jarosz DF, Kowalko JE, Yoshizawa M, Jeffery WR, Borowsky RL, Lindquist S, and Tabin CJ (2013). Cryptic variation in morphological evolution: HSP90 as a capacitor for loss of eyes in a cavefish. Science 342: 1372-1375  DOI: 10.1126/science.1240276

Smith JJ, Kuraku S, Holt C, Sauka-Spengler T, Jiang N, Campbell MS, Yandell MD, Manousaki T, Meyer A, Bloom OE, Morgan J.R., Buxbaum JD, Sachidanadam R, Sims C, Garruss AS, Cook M, Krumlauf R, Wiedemann LM, Sower SA, Decatur WA, Hall JA, Amemiya CT, Saha NR, Buckley KM, Rast JP, Das S, Hirano M, McCurley N, Guo P, Rohner N, Tabin CJ, Piccinelli P, Elgar G, Ruffier M, Aken BL, Searle SMJ, Muffato M, Pignatelli M, Herrero J, Jones M, Brown CT, Chung-Davidson Y-W, Nanlohy KG, Libants SV, Yeh C-Y, McCauley DW, Langeland JA, Pancer Z, Fritzsch B, de Jong PJ, Zhu B, Fulton LL, Theising B, Flicek P, Bronner M, Warren WC, Clifton SW, Wilson RK, Li W. (2013) Sequencing of the sea lamprey (Petromyzon marinus) provides insights into vertebrate evolution.  Nature Genetics.  45:415-421.

Tulin, S., Aguiar, D.,Istrail, S.and Smith, J. A quantitative reference transcriptome for Nematostella vectensis early embryonic development: a pipeline for de novo assembly in emerging model systems. Accepted for publication in EvoDevo Journal.