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Galford, G. L., J. M. Melillo, D. W. Kicklighter, T. W. Cronin, C. E. P. Cerri, J. F. Mustard, and C. C. Cerri. 2010. Greenhouse gas emissions from alternative futures of deforestation and agricultural management in the southern Amazon. Proceedings of the National Academy of Sciences 107 (46) : 19649-19654 . 10.1073/pnas.1000780107

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Mather, ME; Finn, JT; Pautzke, SM; Fox, D; Savo,y T; Brundage, HM; Deegan, LA; Muth, RM. 2010. Diversity in destinations, routes and timing of small adult and sub-adult striped bass Morone saxatilis on their southward autumn migration. Journal of Fish Biology77 (10) : 2326-2337. 10.1111/j.1095-8649.2010.02811.x

McGuire, AD; Hayes, DJ; Kicklighter, DW; Manizza, M; Zhuang, Q; Chen, M; Follows, MJ; Gurney, KR; McClelland, JW; Melillo, JM; Peterson, BJ; Prinn, RG . 2010. An analysis of the carbon balance of the Arctic Basin from 1997 to 2006. Tellus Series B. 62 (5) : 455-474. 10.1111/j.1600-0889.2010.00497.x

Melillo, JM; Kicklighter, DW; Tian, H; Butler, S. 2010. Fertilizing Change: Carbon-nitrogen interactions and carbon storage in land ecosystems. In: Hillel, D. and C. Rosenzweig (Eds). 2010. Handbook of Climate Change and Agroecosystems: Impacts, Adaptation, and Mitigation. Imperial College Press. London. 438pp.

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Olsen, Y. S., S. E. Fox, E. K. Kinney, M. Teichberg, and I. Valiela. 2010. Differences in urbanization and degree of marine influence are reflected in δ13C and δ15N of producers and consumers in seagrass habitats of Puerto Rico. Marine Environmental Research 69: 198–206.

Pautzke, SM; Mather, ME; Finn, JT; Deegan, LA; Muth, RM . 2010. Seasonal use of a New England estuary by foraging contingents of migratory striped bass. Transactions of the American Fisheries Society 139 (1) : 257-269. 10.1577/T08-222.1.

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Sabine, C. L., H. Ducklow and M. Hood. 2010. International Carbon Coordination: Roger Revelle's Legacy in the Intergovernmental Oceanographic Commission. Oceanography 23(3):24-37.

Schofield, O., H. W. Ducklow, D. G. Martinson, M. P. Meredith, M. A. Moline, and W. R. Fraser. 2010. How do polar marine ecosystems respond to rapid climate change? Science 328:1520-1523.

Searchinger, TD; Hamburg, SP; Melillo, J; Chameides, W; Havlik, P; Kammen, DM; Likens, GE; Obersteiner, M; Oppenheimer, M; Robertson, GP; Schlesinger, WH; Lubowski, R; Tilman, GD . 2010. Bioenergy: Counting on incentives--Response. Science 327 (5970) : 1200-a. 10.1126/science.327.5970.1200-a

Searchinger, TD; Hamburg, SP; Melillo, J; Chameides, W; Havlik, P; Kammen, DM; Likens, GE; Obersteiner, M; Oppenheimer, M; Robertson, GP; Schlesinger, WH; Tilman, GD; Lubowski, R . 2010. Carbon calculations to consider--Response. Science 327 (5967) : 781-a. 10.1126/science.327.5967.781-a

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Straza, T.R.A., H. W. Ducklow, A. E. Murray, and D. L. Kirchman. 2010. Abundance and single-cell activity of bacterial groups in Antarctic coastal waters. Limnology and Oceanography 55(6):2526-2536.

Tian, HQ; Chen, GS; Zhang, C; Melillo, JM; Hall, CAS . 2010. Pattern and variation of C:N:P ratios in China's soils: a synthesis of observational data. Biogeochemistry 98 (1-3) : 139-151. 10.1007/s10533-009-9382-0

Vallino, J.J. (2010) Ecosystem biogeochemistry considered as a distributed metabolic network ordered by maximum entropy production. Phil. Trans. R. Soc. B, 365, 1417-1427, doi:10.1098/rstb.2009.0272.

Vargas, R., D. Baldocchi, M. Allen, M. Bahn, T. Black, S. Collins, J. Curiel Yuste, T. Hirano, R. Jassal, J. Pumpanen, and J. Tang, 2010. Looking deeper into the soil: biophysical controls and seasonal lags of soil CO2 production and efflux. Ecological Applications 20: 1569-1582.

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Yano, Y., G. R. Shaver, A. E. Giblin, E. B. Rastetter, and K. J. Nadelhoffer. 2010. Nitrogen dynamics in a small arctic watershed: Retention and downhill movement of 15N. Ecological Monographs 80 (2): 331-351.

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York, J. K., G. Tomasky, I. Valiela and A. E. Giblin. 2010. Isotopic approach to determining the fate of ammonium regenerated from sediments in a eutrophic sub-estuary of Waquoit Bay, MA. Estuaries and Coasts 33: 1069-1079.

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Amaral-Zettler, L. A., E. A. McCliment, H. W. Ducklow, and S. M. Huse. 2009. A method for Studying protistan diversity using massively parallel sequencing of V9 hypervariable regions of small-subunit ribosomal RNA genes. PLoS ONE 4(7): e6372. doi:10.1371/journal.pone.0006372.

Balshi, M. S., A. D. McGuire, P. Duffy, M. Flannigan, D. W. Kicklighter and J. Melillo. 2009. Vulnerability of carbon storage in North American boreal forests to wildfires during the 21st century. Global Change Biology 15:1491-1510.

Bowen, J. L., B. C. Crump, L. A. Deegan, and J. E. Hobbie. 2009. Increased supply of ambient nitrogen has minimal effect on salt marsh bacterial production. Limnology and Oceanography 54:713 - 722 .

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Bradford, M. A., M. D. Wallenstein, S. D. Allison, K. K. Treseder, S. D. Frey, B. W. Watts, C. A. Davies, T. R. Maddox, J. M. Melillo, J. E. Mohan, and J. F. Reynolds. 2009. Decreased mass specific respiration under experimental warming is robust to the microbial biomass method employed. Ecology Letters. 12 (7): E15-E18.

Buchsbaum, R. N., L. A. Deegan, J. Horowitz, R. H. Garritt, J. P. Ludlam, and D. H. Shull. 2009. Effects of regular salt marsh haying on marsh plants, algae, invertebrates and birds at Plum Island Sound, Massachusetts. Wetlands Ecology and Management 17:469-487 DOI 10.1007/s11273-008-9125-3.

Bustamante, M.M.C., H. Watson, J. Melillo, D.J. Connor, H. Hardy, E. Lambin, H. Lotze-Campen, N.H. Ravindranath, T.D. Searchinger and J. Tschirley. 2009. What are the final land limits? Pp. 271-291, chapter 16, in R.W. Howarth and S. Bringezu, eds. Biofuels: Environmental Consequences and Interactions with Changing Land Use.

Campioli, M., L. E. Street , A. Michelsen, G. R. Shaver, T. Maere, R. Samson and R. Lemeur. 2009. Determination of leaf area index, total foliar N, and normalized difference vegetation index for Arctic ecosystems dominated by Cassiope tetragona. Arctic, Antarctic, and Alpine Research 41(4):426–433.

Carmichael, R.H., E. Gaines, Z. Sheller, A. Tong, A. Clapp, and I. Valiela. 2009. Diet composition of juvenile horseshoe crabs: Implications for growth and survival of natural and cultured stocks, pp. 521-534. In : Biology and Conservation of Horseshoe Crabs, J.T. Tanacredi, M.L. Botton, D. Smith, (eds.) Springer.

Carmichael, R. H., T. Hattenrath, I. Valiela, R. H. Michener. Nitrogen stable isotopes in the shell of Mercenaria mercenaria trace wastewater inputs from watershed to estuarine ecosystems. Aquatic Biology 4:99-111.

Castro, P., I. Valiela, and H. Freitas. 2009. Sediment pool and plant content as indicators of nitrogen regimes in Portuguese estuaries. Journal of Experimental Marine Biology and Ecology 380:1–10.

Chaves, J., C. Neill, S. Germer, S. Gouveia Neto, A. V. Krusche, A. Castellanos Bonilla and H. Elsenbeer. 2009. Nitrogen transformations in flowpaths leading from soils to streams in Amazon forest and pasture. Ecosystems 12: 961-972.

Crump, B. C., B. J. Peterson, P. A. Raymond, R. M. W. Amon, A. Rinehart, J. W. McClelland, R. M. Holmes. 2009. Circumpolar synchrony in big river bacterioplankton. Proceedings of the National Academy of Sciences 106 (50) : 21208-21212. 10.1073/pnas.0906149106.

Drake, D. C.. B. J. Peterson, K. A. Galván, L. A. Deegan, C. Hopkinson, J. M. Johnson, K. Koop-Jakobsen, L. E. Lemay, C. Picard. 2009. Salt marsh ecosystem biogeochemical responses to nutrient enrichment: a paired 15N tracer study. Ecology: Vol. 90, No. 9, pp. 2535-2546.

Ducklow, H. W., S. C. Doney and D. K. Steinberg. Contributions of long-term research and time series observations to marine ecology and biogeochemistry. Annual Reviews of Marine Science 1:279-302.

Ducklow, H. W., X. A. G. Moran and A. E. Murray. Bacteria in the greenhouse: Marine microbes and climate change. Pp 1-32 in Environmental Microbiology, 2nd Edition. R. Mitchell and J. Gu, eds. Wiley-Blackwell, New York, 375 pp.

Felzer, B. S., T. W. Cronin, J. M. Melillo, D. W. Kicklighter and C. A. Schlosser. 2009. Importance of carbon-nitrogen interactions and ozone on ecosystem hydrology during the 21st century. Journal of Geophysical Research 114, G01020, doi: 10.1029/2008JG000826.

Fennel, K., D. Brady, D. DiToro, R.W. Fulweiler, W. S. Gardner, A. Giblin, M. J. McCarthy, A. Rao, S. Seitzinger, M. Thouvenot-Korppoo and C. Tobias. 2009. Modeling denitrification in aquatic sediments. Biogeochemistry. 93: 159-178.

Fox, S. E., M. Teichberg, Y.S. Olsen, L. Heffner and I. Valiela. 2009. Restructuring of benthic communities in eutrophic estuaries: lower abundance of prey leads to trophic shifts from omnivory to grazing. Marine Ecology Progress Series 380:43-57

Geisz, H., R. Dickhut, M. Cochran, W. Fraser, and H. Ducklow. 2009. Response to Comment on 'Melting glaciers: a Probable Source of DDT to the Antarctic Marine Ecosystem'. Environmental Science & Technology. 43 (10) : 3974-3975. 10.1021/es900639g

Germer, S., C. Neill. T. Vetter, J. Chaves, A. V. Krusche and H. Elsenbeer. 2009. Implications of long-term land-use change on the hydrology and solute budgets of small catchments in Rondônia (Brazil). Journal of Hydrology 364: 349-363.

Giblin, A.E. 2009. Iron and Manganese. In: The Encyclopedia of Inland Waters. Gene Likens, Editor in Chief. Elsevier Press.

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Hall, R. O., J.L. Tank, D. J. Sobota, P.J. Mulholland, J. M. O'Brien, W.K. Dodds, J. R. Webster, H. M. Valett, G. C. Poole, B.J. Peterson, J. L. Meyer, W. H. McDowell, S.L. Johnson, S. K. Hamilton, N. B. Grimm, S. V. Gregory, C. N. Dahm, L. W. Cooper, L. R. Ashkenas, S. M. Thomas, R. W. Sheibley, J. D. Potter, B. R. Niederlehner, L. T. Johnson, A. M. Helton, C. M. Crenshaw, A. J. Burgin, M. J. Bernot, J. J. Beaulieu, and C. P. Arango. Nitrate removal in stream ecosystems measured by N-15 addition experiments: Total uptake. Limnology and Oceanography. 54 (3) : 653-665.

Harrison, J., R, Maranger, R. Alexander, A. E. Giblin, P.-A. Jacinthe, E. Mayorga, S. Seitzinger, D. Sobota and W. Wollheim. 2009. The regional and global significance of nitrogen removal in lakes and reservoirs. Biogeochemistry 93: 143-157.

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Herron, P.M., J.M. Stark, C. Holt, T. Hooker and Z. G. Cardon. 2009. Microbial growth efficiencies across a soil moisture gradient assessed using 13C-acetic acid vapor and 15N-ammonia gas.Soil Biology and Biochemistry 41:1262-1269.

Hobbie J. E., E. A. Hobbie, J.C. Weber, J. Shamhar, H. Drossman, and M. H. Conte. 2009. Mycorrhizal fungi supply nitrogen to host plants in arctic tundra and boreal forests: 15N is the key signal. Can. J. Microbiology 55, 84-94.

Huang, S. and M. Conte. 2009. Source/process apportionment of major and trace elements in sinking particles in the Sargasso Sea. Geochim. Cosmochim. Acta 73(1): 65-90.

Johnson, D. S., J. W. Fleeger and L. A. Deegan. 2009. Large-scale manipulations reveal that top-down and bottom-up controls interact to alter habitat utilization by saltmarsh fauna. Marine Ecology Progress Series 377:33-41.

Karl, T. R., J. M. Melillo, T. C. Peterson (eds.). 2009. Global Climate Change Impacts in the United States. Cambridge University Press.

Kirchman, D.L., X. A. G. Morán and H. Ducklow. 2009. Microbial growth in the polar oceans – role of temperature and potential impact of climate change. Nature Reviews Microbiology 7:451-459.

Kniffin, M., C. Neill, R. M. McHorney and G. Gregory. Nutrient limitation of periphyton and phytoplankton in Cape Cod coastal plain ponds. Northeastern Naturalist 16:395-408.

Koop-Jakobsen, K. and A.E. Giblin. 2009. Anammox in tidal marsh sediments: The role of salinity, nitrogen loading and marsh vegetation. Estuaries and Coasts 32:1559-2723..

Koop-Jakobsen, K., and A. E. Giblin. 2009. A new approach for measuring denitrification in the rhizosphere of vegetated marsh sediments. Limnology and Oceanography: Methods 7:626 - 637.

Lu, Y., Q. Zhuang, G. Zhou, A. Sirin, J. Melillo and D. Kicklighter. Possible decline of the carbon sink in the Mongolian Plateau during the 21st century, Environmental Research Letters 4 045023 (8pp).

MacIntyre, S., J. P. Fram, N. D. Bettez, W. J. O’Brien, J. E. Hobbie, and G. W. Kling. 2009. Climate related variations in mixing dynamics of an Alaskan arctic lake. Limnology and Oceanography 54 2401-2417.

Manizza, M., M. J. Follows, S. Dutkiewicz, J. W. McClelland, D. Menemenlis, C. N. Hill, A. Townsend-Small, B. J. Peterson. Modeling transport and fate of riverine dissolved organic carbon in the Arctic Ocean. Global Biogeochemical Cycles. 23 : Art. No. GB4006

Melillo, J.M., J.M. Reilly, D.W. Kicklighter, A.C. Gurgel, T.W. Cronin, S. Paltsev, B.S. Felzer, A.P. Sokolov and C.A.Schlosser. Indirect Emissions from Biofuels: How Important? Science 326:1397-1399.

Melillo, J. M., A.C. Gurgel, D. W. Kicklighter, J. M. Reilly, T. W. Cronin, B. S. Felzer, S. Paltsev, C. A. Schlosser, A. P. Sokolov and X. Wang. 2009. Unintended environmental consequences of a global biofuels program. MIT JPSPGC, Report 168, January, 32 pp.

Mather, M. E., J. T. Finn, K. H. Ferry, L. A. Deegan and G. A. Nelson. 2009. Use of non-natal estuaries by migratory striped bass (Morone saxatilis) in summer. Fishery Bulletin 107(3): 329-337

Montes-Hugo, M. A., H. Ducklow, and O. M. Schofield. 2009. Contribution by different marine bacterial communities to particulate beam attenuation. Marine Ecology Progress Series 379:13-22.

Montes-Hugo, M., S. C. Doney, H. W. Ducklow, W. Fraser, D. Martinson, S. E. Stammerjohn and O. Schofield. 2009. Recent changes in phytoplankton communities associated with rapid regional climate change along the Western Antarctic Peninsula. Science 323: 1470-1473

Mortazavi, B., M. H. Conte, J. Chanton, M. C. Smith, J. C. Weber, J. Crumsey and J. Ghashghaie. 2009. Does the 13C of foliage respired CO2 and biochemical pools reflect the 13C of recently assimilated carbon? Plant, Cell and Environment, 32, 1310-1323

Mulholland, P. J. R. O. Hall, D. J. Sobota, W. K. Dodds, S. E. G. Findlay, N. B. Grimm, S. K. Hamilton, W. H. McDowell, J. M. O'Brien, J. L. Tank, L. R. Ashkenas, L. W. Cooper, C. N. Dahm, S. V. Gregory, S. L. Johnson, J. L. Meyer, B. J. Peterson, G. C. Poole, H. M. Valett, J. R. Webster, C. P. Arango, J. J. Beaulieu, M. J. Bernot, A. J. Burgin, C. L. Crenshaw, A. M. Helton, L. T. Johnson, B. R. Niederlehner, J. D. Potter, R. W.Sheibley, and S. M. Thomas. 2009. Nitrate removal in stream ecosystems measured by 15N addition experiments: Denitrification. Limnology and Oceanography 54 (3):666-680.

Neill, C., M. O. Bezerra, R. McHorney and C. B. O’Dea. 2009. Distribution, species composition and management implications of seed banks in southern New England coastal plain ponds. Biological Conservation 142:1350-1361.

Olsen, Y., S, E. Foxa, E. L. Kinney, M. Teichberg and I. Valiela. Differences in urbanization and degree of marine influence are reflected in δ13C and δ15N of producers and consumers in seagrass habitats of Puerto Rico. Marine Environmental Research. E-first. 10.1016/j.marenvres.2009.10.005.

Olsrud, M., B. A. Carlsson, B.M Svensson, A. Michelsen, J.M. Melillo. Responses of fungal root colonization, plant cover and leaf nutrients to long-term exposure to elevated atmospheric CO2 and warming in a subarctic birch forest understory. Global Change Biology doi: 10.1111/j.1365-2486.2009.02079.

Roberts, K. A., C. Xu, C.-C Huang, M. H. Conte, P. H. Santschi (2009) Scavenging and fractionation of thorium vs. protactinium in the ocean, as determined from particle-water partioning experiments with sediment trap material from the Gulf of Mexico and Sargasso Sea. Earth Planet. Sci. Letts., 286, 131-138

Rocha, A. V. and G. R. Shaver. 2009. Advantages of a two band EVI calculated from solar and photosynthetically active radiation fluxes. Agricultural and Forest Meteorology 149(9): 1560-1563

San Gil, I., K. Baker, J. Campbell, E. G. Denny, K. Vanderbilt, B. Riordan, R. Koskela, J. Downing, S. Grabner, E. Melendez, J. Walsh, M, Kortz, J. Conners, L. Yarmey , N. Kaplan, E. Boose L. Powell, C. Gries, R. Schroeder , T. Ackerman, K. Ramsey, B. Benson, J. Chipman, J. Laundre, R. Garritt, D. Henshaw, B. Collins, C. Gardner, S. Bohm, M. O'Brien, J. Gao, W. Sheldon, S. Lyon, D. Bahauddin, M. Servilla, D. Costa and J. Brunt. 2009. The Long-Term Ecological Research community metadata standardisation project: A progress report. International Journal of Metadata, Semantics and Ontologies 4(3): 141 - 153

Searchinger, T., S. Hamburg, J. Melillo, W. Chameides, P. Havlik, D. Kammen, G. Likens, R. Lubowski, M. Obersteiner, M. Oppenheimer, G. P. Robertson, W. Schlesinger and G. D. Tilman. 2009. Fixing a critical climate accounting error. Science 326:527-528.

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Drake, D. C., B. J. Peterson, L. A. Deegan, L. A. Harris, E. E. Miller, and R.S. Warren. 2008. Plant nitrogen dynamics in fertilized and natural New England saltmarshes: A paired 15N tracer study. Marine Ecology Progress Series 354:35-46.

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Gage, D.J., P.H. Herron, C. A. Pinedo, and Z. G. Cardon. 2008. Live reports from the soil grain – the promise and challenge of microbiosensors. Functional Ecology 22: 983-989

Galford, G.L., J. F. Mustard, J. M. Melillo, A. Gendrin, C. C. Cerri and C. E. P. Cerri. 2008. Wavelet analysis of MODIS time series to detect expansion and intensification of row-crop agriculture in Brazil. Remote Sensing of Environment: 112(2):576-587.

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