2005 Publications

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Arkhipova, I. and M. Meselson (2005). “Deleterious transposable elements and the extinction of asexuals.” Bioessays 27(1): 76-85.

Arkhipova, I. R. (2005). “Mobile genetic elements and sexual reproduction.” Cytogenet Genome Res 110(1-4): 372-82.

Arkhipova, I. R. and M. Meselson (2005). “Diverse DNA transposons in rotifers of the class Bdelloidea.” Proc Natl Acad Sci U S A 102(33): 11781-6.

Bahr, M., B. C. Crump, V. Klepac-Ceraj, A. Teske, M. L. Sogin and J. E. Hobbie (2005). “Molecular characterization of sulfate-reducing bacteria in a New England salt marsh.” Environ Microbiol 7(8): 1175-85.

Bordenstein, S. and R. B. Rosengaus (2005). “Discovery of a novel wolbachia supergroup in isoptera.” Curr Microbiol 51(6): 393-8.

Bordenstein, S. R. and W. S. Reznikoff (2005). “Mobile DNA in obligate intracellular bacteria.” Nat Rev Microbiol 3(9): 688-99.

Casiraghi, M., S. R. Bordenstein, L. Baldo, N. Lo, T. Beninati, J. J. Wernegreen, J. H. Werren and C. Bandi (2005). “Phylogeny of Wolbachia pipientis based on gltA, groEL and ftsZ gene sequences: clustering of arthropod and nematode symbionts in the F supergroup, and evidence for further diversity in the Wolbachia tree.” Microbiology 151(Pt 12): 4015-22.

Degnan, P. H., A. B. Lazarus and J. J. Wernegreen (2005). “Genome sequence of Blochmannia pennsylvanicus indicates parallel evolutionary trends among bacterial mutualists of insects.” Genome Res 15(8): 1023-33.

Dhillon, A., S. Goswami, M. Riley, A. Teske and M. Sogin (2005). “Domain evolution and functional diversification of sulfite reductases.” Astrobiology 5(1): 18-29.

Dhillon, A., M. Lever, K. G. Lloyd, D. B. Albert, M. L. Sogin and A. Teske (2005). “Methanogen Diversity Evidenced by Molecular Characterization of Methyl Coenzyme M Reductase A (mcrA) Genes in Hydrothermal Sediments of the Guaymas Basin.” Appl Environ Microbiol 71(8): 4592-601.

DiPaolo, C., R. Kieft, M. Cross and R. Sabatini (2005). “Regulation of trypanosome DNA glycosylation by a SWI2/SNF2-like protein.” Mol Cell 17(3): 441-51.

Evgen’ev, M. B. and I. R. Arkhipova (2005). “Penelope-like elements–a new class of retroelements: distribution, function and possible evolutionary significance.” Cytogenet Genome Res 110(1-4): 510-21.

Fry, A. J. and J. J. Wernegreen (2005). “The roles of positive and negative selection in the molecular evolution of insect endosymbionts.” Gene 355: 1-10.

Golden, D. E. and S. L. Hajduk (2005). “The 3′-untranslated region of cytochrome oxidase II mRNA functions in RNA editing of African trypanosomes exclusively as a cis guide RNA.” Rna 11(1): 29-37.

Gould, R. M., H. G. Morrison, E. Gilland and R. K. Campbell (2005). “Myelin tetraspan family proteins but no non-tetraspan family proteins are present in the ascidian (Ciona intestinalis) genome.” Biol Bull 209(1): 49-66.

Greenberg, R. M. (2005). “Are Ca2+ channels targets of praziquantel action?” Int J Parasitol 35(1): 1-9.

Herbeck, J. T., P. H. Degnan and J. J. Wernegreen (2005). “Nonhomogeneous model of sequence evolution indicates independent origins of primary endosymbionts within the enterobacteriales (gamma-Proteobacteria).” Mol Biol Evol 22(3): 520-32.

Kolker, E., A. F. Picone, M. Y. Galperin, M. F. Romine, R. Higdon, K. S. Makarova, N.
Kolker, G. A. Anderson, X. Qiu, K. J. Auberry, G. Babnigg, A. S. Beliaev, P. Edlefsen, D. A. Elias, Y. A. Gorby, T. Holzman, J. A. Klappenbach, K. T. Konstantinidis, M. L. Land, M. S. Lipton, L. A. McCue, M. Monroe, L. Pasa-Tolic, G. Pinchuk, S. Purvine, M. H. Serres, S. Tsapin, B. A. Zakrajsek, W. Zhu, J. Zhou, F. W. Larimer, C. E. Lawrence, M. Riley, F. R. Collart, J. R. Yates, 3rd, R. D. Smith, C. S. Giometti, K. H. Nealson, J. K. Fredrickson and J. M. Tiedje (2005). “Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations.” Proc Natl Acad Sci U S A 102(6): 2099-104.

Kysela, D. T., C. Palacios and M. L. Sogin (2005). “Serial analysis of V6 ribosomal sequence tags (SARST-V6): a method for efficient, high-throughput analysis of microbial community composition.” Environ Microbiol 7(3): 356-64.

Lee, W. J., A. G. B. Simpson and D. J. Patterson (2005). “Free-living heterotrophic flagellates from freshwater sites in Tasmania (Australia), a field survey.” Acta Protozoologica 44: 321-350.

Mark Welch, D. B. (2005). “Bayesian and maximum likelihood analyses of rotifer-acanthocephalan relationships.” Hydrobiologia 546: 47-54.

Mark Welch, D. B. and J. L. Mark Welch (2005). “Genomic approaches to rotifer ecology.” Hydrobiologia 546: 101-108.

Mehta, M. P., J. A. Huber and J. A. Baross (2005). “Incidence of novel and potentially archaeal nitrogenase genes in the deep Northeast Pacific Ocean.” Environ Microbiol 7(10): 1525-34.

Messerli, M. A., L. A. Amaral-Zettler, E. Zettler, S. K. Jung, P. J. Smith and M. L. Sogin (2005). “Life at acidic pH imposes an increased energetic cost for a eukaryotic acidophile.” J Exp Biol 208(Pt 13): 2569-79.

Murray, S., M. Flo Jorgensen, S. Y. Ho, D. J. Patterson and L. S. Jermiin (2005). “Improving the analysis of dinoflagellate phylogeny based on rDNA.” Protist 156(3): 269-86.

Noel, C., F. Dufernez, D. Gerbod, V. P. Edgcomb, P. Delgado-Viscogliosi, L. C. Ho, M. Singh, R. Wintjens, M. L. Sogin, M. Capron, R. Pierce, L. Zenner and E. Viscogliosi (2005). “Molecular phylogenies of Blastocystis isolates from different hosts: implications for genetic diversity, identification of species, and zoonosis.” J Clin Microbiol 43(1): 348-55.

Palm, D., M. Weiland, A. G. McArthur, J. Winiecka-Krusnell, M. J. Cipriano, S. R. Birkeland, S. E. Pacocha, B. Davids, F. Gillin, E. Linder and S. Svard (2005). “Developmental changes in the adhesive disk during Giardia differentiation.” Mol Biochem Parasitol 141(2): 199-207.

Polaszek, A., D. Agosti, M. Alonso-Zarazaga, G. Beccaloni, P. de Place Bjørn, P. Bouchet, D. J. Brothers, E. o. Cranbrook, N. Evenhuis, H. C. J. Godfray, N. F. Johnson, F.-T. Krell, D. Lipscomb, C. H. C. Lyal, G. M. Mace, S. Mawatari, S. E. Miller, A. Minelli, S. Morris, P. K. L. Ng, D. J. Patterson, R. L. Pyle, N. Robinson, L. Rogo, J. Taverne, F. C. Thompson, J. van Tol, Q. D. Wheeler and E. O. Wilson (2005). “A universal register for animal names.” Nature 437(7058): 477.

Roland, S., M. Bahr, L. Olendzenski and D. J. Patterson (2005). “Switch on micro*scope.” The Science Teacher: 47-49.

Schaber, J., C. Rispe, J. Wernegreen, A. Buness, F. Delmotte, F. J. Silva and A. Moya (2005). “Gene expression levels influence amino acid usage and evolutionary rates in endosymbiotic bacteria.” Gene 352: 109-17.

Serres, M. H. and M. Riley (2005). “Gene fusions and gene duplications: relevance to genomic annotation and functional analysis.” BMC Genomics 6(1): 33.

Sheehan, K. B., D. J. Patterson, B. L. Dicks and J. B. Henson (2005). Seen and Unseen, discovering the microbes of Yellowstone. Nashville, TN, Falcon Press.

Shiflett, A. M., J. R. Bishop, A. Pahwa and S. L. Hajduk (2005). “Human high density lipoproteins are platforms for the assembly of multi-component innate immune complexes.” J Biol Chem 280(38): 32578-85.

Toaldo, C. B., R. Kieft, A. Dirks-Mulder, R. Sabatini, H. G. van Luenen and P. Borst (2005). “A minor fraction of base J in kinetoplastid nuclear DNA is bound by the J-binding protein 1.” Mol Biochem Parasitol 143(1): 111-5.

van Luenen, H. G., R. Kieft, R. Mussmann, M. Engstler, B. ter Riet and P. Borst (2005). “Trypanosomes change their transferrin receptor expression to allow effective uptake of host transferrin.” Mol Microbiol 58(1): 151-65.

Weiland, M. E., A. G. McArthur, H. G. Morrison, M. L. Sogin and S. G. Svard (2005). “Annexin-like alpha giardins: a new cytoskeletal gene family in Giardia lamblia.” Int J Parasitol 35(6): 617-26.

Wernegreen, J. J. (2005). “For better or worse: genomic consequences of intracellular mutualism and parasitism.” Curr Opin Genet Dev 15(6): 572-83.

Wilson, J. Y., A. G. McArthur and J. J. Stegeman (2005). “Characterization of a cetacean aromatase (CYP19) and the phylogeny and functional conservation of vertebrate aromatase.” General and Comparative Endocrinology 140: 74-83.

Zettler, L. A., A. D. Laatsch, E. Zettler, T. A. Nerad, J. Cole, F. C. Diaz, J. Diaz, D. H. Janzen, A. Sittenfeld, O. Mason and A. L. Reysenbach (2005). “A microbial observatory of caterpillars: isolation and molecular characterization of protists associated with the saturniid moth caterpillar Rothschildia lebeau.” J Eukaryot Microbiol 52(2): 107-15.


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