2014 Publications

2014       2013        2012       2011        2010        2009        2008        2007        2006        2005        2004        2003        2002

Beliaev, A. S., Romine, M. F., Serres, M., Bernstein, H. C., Linggi, B. E., Markillie, L. M., Isern, N. G., Chrisler, W. B., Kucek, L. A., Hill, E. A., Pinchuk, G. E., Bryant, D. A., Steven Wiley, H., Fredrickson, J. K., and Konopka, A. (2014). “Inference of interactions in cyanobacterial-heterotrophic co-cultures via transcriptome sequencing.” ISME J, doi: 10.1038/ismej.2014.69.

Bracken-Grissom, H., Collins, A. G., Collins, T., Crandall, K., Distel, D., Dunn, C., Giribet, G., Haddock, S., Knowlton, N., Martindale, M., Medina, M., Messing, C., O’Brien, S. J., Paulay, G., Putnam, N., Ravasi, T., Rouse, G. W., Ryan, J. F., Schulze, A., Worheide, G., Adamska, M., Bailly, X., Breinholt, J., Browne, W. E., Diaz, M. C., Evans, N., Flot, J. F., Fogarty, N., Johnston, M., Kamel, B., Kawahara, A. Y., Laberge, T., Lavrov, D., Michonneau, F., Moroz, L. L., Oakley, T., Osborne, K., Pomponi, S. A., Rhodes, A., Santos, S. R., Satoh, N., Thacker, R. W., Van de Peer, Y., Voolstra, C. R., Welch, D. B., Winston, J., and Zhou, X. (2014). “The Global Invertebrate Genomics Alliance (GIGA): developing community resources to study diverse invertebrate genomes.” J Hered, 105(1), 1-18.

Fischer, A. H. L., Mozzherin, D., Eren, A. M., Lans, K. D., Wilson, N., Cosentino, C., and Smith, J. (2014). “SeaBase: A Multispecies Transcriptomic Resource and Platform for Gene Network Inference.” Integrative and Comparative Biology, 10.1093/icb/icu065.

Gribble, K. E., Jarvis, G., Bock, M., and Mark Welch, D. B. (2014). “Maternal caloric restriction partially rescues the deleterious effects of advanced maternal age on offspring.” Aging Cell, Article first published online: 24 MAR 2014.

Gribble, K. E., Kaido, O., Jarvis, G., and Mark Welch, D. B. (2014). “Patterns of intraspecific variability in the response to caloric restriction.” Exp Gerontol, 51, 28-37.

Halliday, E., McLellan, S. L., Amaral-Zettler, L. A., Sogin, M. L., and Gast, R. J. (2014). “Comparison of Bacterial Communities in Sands and Water at Beaches with Bacterial Water Quality Violations.” PLoS ONE, 9(3), e90815.

Huse, S. M., Mark Welch, D. B., Voorhis, A., Shipunova, A., Morrison, H. G., Eren, A. M., and Sogin, M. L. (2014). “VAMPS: a website for visualization and analysis of microbial population structures.” BMC Bioinformatics, 15(1), 41.

Maignien, L., DeForce, E. A., Chafee, M. E., Eren, A. M., and Simmons, S. L. (2014). “Ecological succession and stochastic variation in the assembly of Arabidopsis thaliana phyllosphere communities.” MBio, 5(1), e00682-13.

Maltz, M. A., Bomar, L., Lapierre, P., Morrison, H. G., McClure, E. A., Sogin, M. L., and Graf, J. (2014). “Metagenomic analysis of the medicinal leech gut microbiota.” Front Microbiol, 5, 151. doi: 10.3389/fmicb.2014.00151

Ong, W. K., Vu, T. T., Lovendahl, K. N., Llull, J. M., Serres, M. H., Romine, M. F., and Reed, J. L. (2014). “Comparisons of Shewanella strains based on genome annotations, modeling, and experiments.” BMC Syst Biol, 8(1), 31.

Orcutt, B. N., LaRowe, D. E., Lloyd, K. G., Mills, H., Orsi, W., Reese, B. K., Sauvage, J., Huber, J. A., and Amend, J. (2014).“IODP Deep Biosphere Research Workshop report – a synthesis of recent investigations, and discussion of new research questions and drilling targets.” Sci. Dril., 17, 61-66. doi: 10.5194/sd-17-61-2014

Reed, D. C., Algar, C. K., Huber, J. A., and Dick, G. J. (2014). “Gene-centric approach to integrating environmental genomics and biogeochemical models.” Proc Natl Acad Sci U S A, 111(5), 1879-84.

Reveillaud, J., Maignien, L., Eren, A. M., Huber, J. A., Apprill, A., Sogin, M. L., and Vanreusel, A. (2014). “Host-specificity among abundant and rare taxa in the sponge microbiome.” ISME J.

Sadler, N. C., Melnicki, M. R., Serres, M. H., Merkley, E. D., Chrisler, W. B., Hill, E. A., Romine, M. F., Kim, S., Zink, E. M., Datta, S., Smith, R. D., Beliaev, A. S., Konopka, A., and Wright, A. T. (2014). “Live cell chemical profiling of temporal redox dynamics in a photoautotrophic cyanobacterium.” ACS Chem Biol, 9(1), 291-300.

Swan, B. K., Chaffin, M. D., Martinez-Garcia, M., Morrison, H. G., Field, E. K., Poulton, N. J., Masland, E. D. P., Harris, C. C., Sczyrba, A., Chain, P. S. G., Koren, S., Woyke, T., and Stepanauskas, R. (2014). “Genomic and Metabolic Diversity of Marine Group I Thaumarchaeota in the Mesopelagic of Two Subtropical Gyres.” PLoS ONE, 9(4), e95380. doi: 10.1371/journal.pone.0095380

Vick-Majors, T. J., Priscu, J. C., and Amaral-Zettler, L. A. (2014). “Modular community structure suggests metabolic plasticity during the transition to polar night in ice-covered Antarctic lakes.” ISME J, 8(4), 778-89.

Wey-Fabrizius, A. R., Herlyn, H., Rieger, B., Rosenkranz, D., Witek, A., Mark Welch, D. B., Ebersberger, I., and Hankeln, T. (2014). “Transcriptome Data Reveal Syndermatan Relationships and Suggest the Evolution of Endoparasitism in Acanthocephala via an Epizoic Stage.” PLoS ONE, 9(2), e88618.

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