2002 Publications

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Arkhipova, I.R. & H.G. Morrison. 2001. Three retrotransposon families in the genome of Giardia lamblia: Two telomeric, one dead. Proc. Natl. Acad. Sci. USA 98:14497-14502.

Arkhipova, I.R., K.I. Pyatkov, M. Meselson, & M.B. Evgenev. 2003. Retroelements containing introns in diverse invertebrate taxa. Nature Genetics 33:123-124.

Cross, M., R. Kieft, Sabatini, R., A. Dirks-Mulder, I. Chaves & P. Borst. 2002. J-binding protein increases the level and retention of the unusual base J in trypanosome DNA.  Mol. Micro. 46:37-47.

Dehal, P., Y. Satou, R.K. Campbell, J. Chapman, B. Degnan, et al.  2002. The draft genome of Ciona intestinalis: Insights into chordate and vertebrate origins. Science 298:2157-2167.

Edgcomb, V.P., D.T. Kysela, A. Teske, A. de Vera Gómez & M.L. Sogin. 2002. Benthic eukaryotic diversity in a hydrothermal vent. Proc. Natl. Acad. Sci. 99: 7658-7662.

Edgcomb, V.P., A.G.B. Simpson, L. A. Amaral Zettler, T.A. Nerad, D. J. Patterson, M.E. Holder & M.L. Sogin. 2002. Pelobionts are degenerate protists: Insights from molecules and morphology. Mol. Biol. Evol. 19:978-982.

García-Verela, M., M. P. Cummings, G. Pérez-Ponce de León, S. L. Gardner & J. P. Laclette. 2002. Phylogenetic analysis based on 18S ribosomal RNA gene sequences supports the existence of class Polyacanthocephala (Acanthocephala). Molecular Phylogenetics and Evolution 23: 288-292.

Laan, M., Richmond, H., He, C., & Campbell, R.K. 2002. Zebrafish as a Model for Vertebrate Reproduction: Characterization of the First Functional Zebrafish (Danio rerio) Gonadotropin Receptor.  Gen. Comp. Endocrinol. 125: 349-364.

Langford, T.D., J.D. Silberman, M.E-L. Weiland, S.G. Svärd, J.M.McCaffery, M.L. Sogin & F.D. Gillin. 2002. Giardia lamblia: Identification and characterization of Rab and GDI proteins in a genome survey of the ER to Golgi endomembrane system. Experimental Parasitology 101: 13-24.

Morrison, H.G., Zamora, G., Campbell, R.K. & Sogin, M.L. 2002. Inferring protein function from genomic sequence: Giardia lamblia expresses a phosphatidylinositol kinase-related kinase similar to yeast and mammalian TOR.  Comp. Biochem. Physiol. B Biochem. Mol. Biol. 133:477-491.

Nixon, J.E.J., A. Wang, J. Field, H.G. Morrison, A.G. McArthur, M.L.  Sogin, B.J. Loftus, & J. Samuelson. 2002. Evidence for lateral transfer of genes encoding ferredoxins, nitroreductases, NADH oxidase, and alcohol dehydrogenase 3 from anaerobic prokaryotes to Giardia lamblia and Entamoeba histolytica. Eukaryotic Cell 1:181-190.

Nixon, J.E.J., A. Wang, H.G. Morrison, A.G. McArthur, M.L. Sogin, B.  Loftus, & J. Samuelson. 2002. A spliceosomal intron in Giardia intestinalis. Proceedings of the National Academy of Sciences USA 99:3701-3705.

Palacios, C., D.T. Kysela & M.L. Sogin. 2002. Serial Analysis of rRNAs (SARS): A novel molecular strategy for  sampling microbial diversity throughout the universe. Proceedings of the Second European Workshop on Exo/Astrobiology Graz, Austria, 16-19 September 2002 (ESA SP-518, November 2002), p. 481.

Palacios, C. & J.J. Wernegreen. 2002. A strong effect of AT mutational bias on amino acid usage in Buchnera is mitigated at high-expression genes. Molecular Biology and Evolution 19:1575-84.

Podar, M., L. Mullineaux, H-R Huang, P. S. Perlman & M.L. Sogin. 2002. Bacterial Group II introns in a deep-sea hydrothermal vent environment. Applied and Environmental Microbiology 68:6392-6398.

Sabatini, R., N. Meeuwenoord, J.H. van Boom & P. Borst. 2002. Recognition of base J in duplex DNA by J-binding protein. J. Biol. Chem. 277:958-966.

Sabatini, R., N. Meeuwenoord, J.H. van Boom & P. Borst. 2002. Site-specific interactions of JBP with base and sugar moieties in duplex J-DNA. J. Biol. Chem. 277:28150-28156.

Simpson, A.G.B., L.A. Amaral Zettler, F. Gomez, E. Zettler, B.G. Keenan, R. Amils & M.L. Sogin. 2002. Heavy-metal, acid-loving eukaryotes from Spain’s  “River of Fire”. Nature 417: 137.

Simpson, A.G.B., A.J. Roger, J.D. Silberman, D.D. Leipe, V.P. Edgcomb, L.S. Jermiin, D.J. Patterson & M.L. Sogin. Evolutionary history of early diverging eukaryotes: The excavate taxon Carpediemonas is a close relative of Giardia. Mol. Biol. Evol. 19:1782-1791.

Sun, C.-H., D. Palm, A.G. McArthur, S.G. Svard, & F.G. Gillin. 2002. A  novel Myb-related protein involved in transcriptional activation of  encystation genes in Giardia lamblia. Molecular Microbiology 46:971-984.

Tamas, I., L. Klasson, B. Canback, A.K. Naslund, A.S. Eriksson, J.J. Wernegreen, J.P. Sandstrom, N.A.Moran & S.G. Andersson. 2002. 50 million years of genomic stasis in endosymbiotic bacteria. Science 296:2376-9.

Teske, A., K-U. Hinrichs, V. Edgcomb, A. de Vera Gómez, D. Kysela, S.P. Sylva, M.L. Sogin & H.W. Jannasch. 2002. Microbial diversity of hydrothermal sediments in the Guaymas Basin: Evidence for anaerobic methanotrophic communities. Applied and Environmental Microbiology 68:1994-2007.

Wernegreen, J.J. 2002. Genome evolution in bacterial endosymbionts of insects. Nature Reviews Genetics 3:850-61.

Wernegreen, J.J., A.B. Lazarus & P.H. Degnan. 2002. Small genome of Candidatus blochmannia, the bacterial endosymbiont of Camponotus, implies irreversible specialization to an intracellular lifestyle. Microbiology 148:2551-2556.


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