2007 Publications

2013        2012        2011        2010        2009        2008        2007        2006        2005        2004        2003        2002

Huber, J.A., D.B. Welch, H.G. Morrison, S.M. Huse, P.R. Neal, D.A. Butterfield, and M.L. Sogin, Microbial population structures in the deep marine biosphere. Science, 2007.  318(5847): p. 97-100.

Huse, S.M., J.A. Huber, H.G. Morrison, M.L. Sogin, and D.M. Welch, Accuracy and quality of massively parallel DNA pyrosequencing.  Genome Biol, 2007. 8(7): p. R143.

Morrison, H.G., A.G. McArthur, F.D. Gillin, S.B. Aley, R.D. Adam, G.J. Olsen, A.A. Best, W.Z. Cande, F. Chen, M.J. Cipriano, B.J. Davids, S.C. Dawson, H.G. Elmendorf, A.B. Hehl, M.E. Holder, S.M. Huse, U.U. Kim, E. Lasek-Nesselquist, G. Manning, A. Nigam, J.E.  Nixon, D. Palm, N.E. Passamaneck, A. Prabhu, C.I. Reich, D.S. Reiner, J. Samuelson, S.G. Svard, and M.L. Sogin, Genomic minimalism in the early diverging intestinal parasite Giardia lamblia. Science, 2007. 317(5846): p. 1921-6.

Prabhu, A., H.G. Morrison, C.R. Martinez, 3rd, and R.D. Adam, Characterisation of the subtelomeric regions of Giardia lamblia genome isolate WBC6. Int J Parasitol, 2007. 37(5): p.  503-13.

Corradi, N., D.E. Akiyoshi, H.G. Morrison, X. Feng,  L.M. Weiss,  S. Tzipori, and P.J. Keeling, Patterns of Genome Evolution among  the Microsporidian Parasites Encephalitozoon cuniculi, Antonospora locustae, and Enterocytozoon bieneusi.  PloS ONE, 2007. 2(12):e1277. Giardia publication and establishment of giardiadb.org site.

Leary, P. R., Remsen, D.P., Norton, C. N. Patterson,. D. J. and Sarkar, I. N. 2007. Bioinformatics, 23: 1434-1436

Patterson, David J. and Sogin, M. L. 2007.  The micro*scope web tool. pp 579-584 in  Sullivan W. T., Baross, J. A., (eds)  Planets and Life: The emerging Science of Astrobiology.  Cambridge University Press, Cambridge.

Sogin, M. l., Patterson, David J. and McArthur, A. 2007. The origin and diversification of eukaryotes. pp 265-274  in Sullivan W. T., Baross, J. A., (eds)  Planets and Life: The emerging Science of Astrobiology. Cambridge University Press, Cambridge.

Patterson, D. J., Bhattacharya, D., Cole, J., Dunthorn, M., Logsdon, J., Katz, L., and Wegener-Parfrey, L. 2007. Classifying protists.  Microbiology today, Feb 07: 44-45.

Senior Scientist D Patterson established the Bioidiversity Informatics group at the MBL with its flagship role of establishing the informatics environment for the Encyclopedia of Life.  The group attracts further support from the Ellison Medical Foundation to use the informatics infrastructure to develop a macroscope and tools to assist investigations of aging.

Chapman, M. and M.C. Alliegro 2007. A symbiogenetic origin for the centrosome?  Symbiosis, 44:23-31.

Alliegro, M.C. and M.A. Alliegro 2007.  Echinonectin is a Del-1—     like molecule with regulated expression in sea urchin embryos. Gene Expr. Patterns 7:651-657.

Alliegro, M.C and M.A. Alliegro 2007. Analysis of centrosome-associated nucleic acids reveals a unique family of genes. Proc Natl Acad Sci USA, in press.

Huse, S.M., Huber, J.A., Morrison, H.G., Sogin, M.L., and D. Mark Welch.   2007.  Accuracy and quality of massively-parrallel DNA pyrosequencing.   Genome Biology.  8: R143.

Wells, L.E, Armstrong, J.C. and J.A. Huber.  2007.  Disciplinary aspirations and educational opportunities.  In W.T. Sullivan III and J.A. Baross (eds.), 547-557.  Planets and Life: The Emerging Science of Astrobiology.  Cambridge University Press, Cambridge, UK.

Baross, J.A., Schrenk, M.O, and J.A. Huber.  2007.  Limits of Carbon Life on Earth and Elsewhere.  In W.T. Sullivan III and J.A Baross (eds.), 275-291.  Planets and Life: The Emerging Science of Astrobiology, Cambridge University Press, Cambridge, UK.

Huber, J.A., Mark Welch, D.B., Morrison, H.G., Huse, S.M., Neal, P.R., Butterfield, D.A., and   M.L. Sogin.  2007.  Microbial population structures in the deep marine biosphere.  Science.  318:97-100.

Ekanayake, D.K., D.B. Mark Welch, R. Kieft, S. Hajduk and W.P.J. Dittus.   Transmission dynamics of Cryptosporidium infection in a natural population of non-human primates at Polonnaruwa, Sri Lanka. Am. J. Trop. Med. Hyg. 77:818-822 (2007).

Suga, K., D. B. Mark Welch, Y. Tanaka, Y. Sakakura, and A. Hagiwara. Analysis of expressed sequence tags of the cyclically parthenogenetic rotifer Brachionus plicatilis.  PLoS ONE 2: e671 (2007).

Meselson, M. and D.B. Mark Welch. 2007. Stable heterozygosity? Science318: 202-203.

Gribble, K.E., G. Nolan, and D.M. Anderson. 2007. Biodiversity, biogeography and potential trophic impact of Protoperidinium spp. (Dinophyceae) of the southwestern coast of Ireland. Journal of Plankton Research 29 (11): 931-947 (2007).

Huse, S.M., J.A. Huber, H.G. Morrison, M.L. Sogin, and D.B. Mark Welch. Accuracy and quality of massively parallel pyrosequencing. Genome Biology 8: R143 (2007).

Huber, J.A., D.B. Mark Welch, H.G. Morrison, S.M. Huse, P.R. Neal, D.A. Butterfield, and M.L. Sogin. 2007. Microbial population structures in the deep marine biosphere. Science 318: 97-100 (2007).

Gladyshev E.A, Arkhipova I.R. (2007). Telomere-associated endonuclease-deficient Penelope-like retroelements in diverse eukaryotes. Proc Natl Acad Sci USA 104(22):9352-9357. Featured as a cover story in the May 29 PNAS issue, and in the MBL press release 6/13/07.

Gladyshev E.A, Meselson M., Arkhipova I.R. (2007). A deep-branching clade of retrovirus-like retrotransposons in bdelloid rotifers. Gene 390(1-2):136-145.

The first Northeast Mobile DNA meeting organized by the Mobile Genetic Element Cluster took place on April 13-15, 2007, in Woods Hole, MA. It featured 16 talks and 12 poster presentations, and attracted about 40 participants from 8 states, including PIs, post-doctoral scholars, and graduate students. The opening lecture was presented by Matthew Meselson, the recipient of the 2004 Lasker Award for Special Achievement in Medical Science.

The Cluster also celebrated the Mobile DNA Month in Woods Hole in September 2007 by hosting two seminars presented by leading mobile DNAresearchers:9/21/2007 Marlene Belfort, Ph.D.

NYS Dept. of Health, Wadsworth Center for Medical Sciences Adjunct Scientist, Josephine Bay Paul Center, MBL “Genetic Invaders: Introns as retrotransposons” 9/28/2007 Daniel F. Voytas, Ph.D.Iowa State University Transposable elements and genome organization: the influence of chromatin on retrotransposon target specificity.

Edgcomb, V.E., S J. Molyneaux, S. Boer, C.O. Wirsen, M.S. Atkins, K.G. Lloyd, and A. Teske. 2007. Survival and growth of two heterotrophic hydrothermal vent archaea, Pyrococcus strain GB-D and Thermococcus fumicolans, under low pH and high sulfide concentrations in combination with high temperature and pressure regimes. Extremophiles 11:329-342. DOI 10.1007/s00792-006-0043-0.

Teske, A. 2007. Enigmatic Archaeal and Eukaryotic Life at hydrothermal vents and in marine subsurface sediments. Chapter in: Cellular Origins, Life in Extreme Habitats, and Astrobiology (COLE) (Series Editor, J. Seckbach). Springer.

Hines, M.E. P. T. Visscher, A. P. Teske, and R. Devereux. 2007. Sulfur Cycling. Chapter 42 in: ASM Manual of Environmental Microbiology, 3rd edition. (C.J. Huerst, R.L. Crawford, J.L. Garland, D.A. Lipson, A. L. Mills, and L. Stetzenbach, editors). ASM Press, Washington DC.

Teske, A, H. Cypionka, J.G. Holt, and N.R. Krieg. 2007. Enrichment and Isolation. Chapter 11 in: Methods for General and Molecular Microbiology, 3rd edition. (C.A. Reddy, T.J. Beveridge, J.A. Breznak, G. Marzluf, T.M. Schmidt, L.R. Snyder, Editors). ASM Press, Washington DC.

Mackey K.R.M., Calhoun M., Labiosa R.G., Street J.H., Post A.F., and A. Paytan(2007). Phosphorus availability controls phytoplankton community dynamics and taxon specific nutrient status in the Gulf of Aqaba, Red Sea. Limnol. Oceanogr. 52 (2), 873-885.

Chen Y., Street J., Golan, D., Post A.F. and Paytan A. (2007). Estimate of atmospheric dry deposition fluxes and associate input of nutrients in the Gulf of Aqaba. J. Geophys. Res. 112, D04309.

Garczarek L., Dufresne A., Rousvoal1 S., West N., Mazard S., Marie D., Claustre H., Raimbault P., Post A.F., Scanlan D., and Partensky F. (2007). High vertical and low horizontal microdiversity of Prochlorococcus genotypes in the Mediterranean Sea in summer. FEMS Microbiol. Ecol. 60, 189-206.

Wernegreen, J.J.  2007. Genomic signatures of intracellularity: Evolutionary patterns and paces in bacterial mutualists and parasites.  Pp. 196-212 in  Bacterial Pathogenomics, M. J. Pallen, K. E. Nelson, and G. M. Preston, Eds. ASM Press, Washington, DC.

Lo, N., C. Paraskevopoulos, K. Bourtzis, S.L. O’Neill, J.H. Werren, S.R. Bordenstein, and C. Bandi. (2007) Taxonomic status of the intracellular bacterium Wolbachia pipientis. International Journal of Systematics and Evolutionary Microbiology 57: 654-657.

Sanogo, Y.O., S.L. Dobson, S.R. Bordenstein, and R.J. Novak. (2007) Disruption of the Wolbachia surface protein gene wspB by a transposable element in mosquitoes of the Culex pipiens complex (Diptera: Culicidae). Insect Molecular Biology 16(2): 143-154.

Bordenstein, S.R. and J.H. Werren. (2007) Bidirectional incompatibility among divergent Wolbachia and incompatibility level differences among closely related Wolbachia in Nasonia. Heredity 99: 278-287.

Panagiotis I., J. C. D. Hotopp, P. Sapountzis, S. Siozios, G. Tsiamis, S. R. Bordenstein, L. Baldo, J. H. Werren and K. Bourtzis. (2007) On the origin of DNA replication of Wolbachia and closely related bacteria. BMC Genomics 8:182.

Bordenstein, S.R. (2007) Discover the microbes within: The Wolbachia project. Focus on Microbiology Education 14:1, Special Issue on K-12 Education.

Bordenstein, S.R. (2007) Evolutionary genomics: Transdomain gene transfers. Current Biology 17:R935-936.

Ioannidis, P., J.C. Hotopp, Sapountzis, P., G. Tsiamis, S.R. Bordenstein, L. Baldo, Werren, J.H., and K. Bourtzis. New criteria for selecting the origin of DNA replication in Wolbachia and closely related bacteria. BMC Genomics, 8:182.

Jost MC, Lu, Y, Kyle J, Fozzard H, Hillis DM, Zakon H (2008) “Toxin-resistant sodium channels: Parallel adaptive evolution across a complete gene family”. Molecular Biology & Evolution (in press).

Winterberg, K.M. and W.S. Reznikoff. (2007). Screening Transposon Mutant Libraries Using Full-Genome Oligonucleotide Microarrays. In: Advanced Bacterial Genetics: Use of Transposons and Phage for Genomic Engineering, Methods in Enzymology Series, (Kelly T. Hughes and Stanley R. Maloy, Eds.) Elsevier Inc., San Diego, CA. Vol. 421, pp. 110-125.

Winterberg, K.M. and W.S. Reznikoff. (2007). Transposon-based  strategies for the identification of essential bacterial genes. In Gene Essentiality at Genome Scale: Protocols and Bioinformatics. (A. Osterman and S. Gerdes, Eds.) Humana Press, Totowa, NJ. In Press.

Adams, C.D., B. Schnurr, J.F. Marko, and W.S. Reznikoff (2007).    Pulling apart catalytically active Tn5 synaptic complexes using  magnetic tweezers. J. Mol. Biol. 367, 319-327.

Kieft, R., V. Brand, K. Sweeney, D.K. Ekanayake, C. DiPaolo, W.S. Reznikoff and R. Sabatini (2007).  JBP2, a SWI2/SNF2-like protein, regulates de-novo telomeric DNA glycosylation in bloodstream form Trypanosoma brucei.  Molecular and Biochemical Parasitology.  156, 24-31.

Vaezeslami, S., R. Sterling, and W.S. Reznikoff (2007).  Site-directed mutagenesis studies of Tn5 transposase residues involved in synaptic complex formation.  J. Bacteriol.  189, 7436-7441.

Czyz, A., K. Stillmock, D. Hazuda, and W.S. Reznikoff (2007).  Dissecting Tn5 transposition using HIV-1 integrase diketoacid inhibitors.  Biochemistry. 46, 10776-10789.

Gradman, R.J and W.S. Reznikoff. (2007). Tn5 Synaptic Complex Formation: The role of Transposase Residue W450. J. Bacteriol.

Morrison, H.G., A.G. McArthur, F.D. Gillin, S.B. Aley, R.D. Adam, G.J. Olsen, A.A. Best, W.Z. Cande, F. Chen, M.J. Cipriano, B.J. Davids, S.C. Dawson, H.G. Elmendorf, A.B. Hehl, M.E. Holder, S.M. Huse, U.U. Kim, E. Lasek-Nesselquist, G. Manning, A. Nigam, J.E.  Nixon, D. Palm, N.E. Passamaneck, A.Prabhu, C.I. Reich, D.S. Reiner, J. Samuelson, S.G. Svard, and M.L. Sogin, Genomic minimalism in the early diverging intestinal parasite Giardia lamblia. Science, 2007. 317(5846): p. 1921-6.

Huse, S.M., Huber, J.A., Morrison, H.G., Sogin, M.L., and D. Mark Welch.   2007.  Accuracy and quality of massively-parrallel DNA pyrosequencing.   Genome Biology.  8: R143.

Huber, J.A., Mark Welch, D.B., Morrison, H.G., Huse, S.M., Neal, P.R., Butterfield, D.A., and   M.L. Sogin.  2007.  Microbial population structures in the deep marine biosphere.  Science.  318:97-100.

 

Print Friendly