2010 Publications

Aberle, N., Hansen, T., Böttger-Schnack, R., Burmeister, A., Post, A. F., and Sommer, U. (2010). ”Trophodynamic interactions of zooplankton communities in the northern Gulf of Aqaba.” Mar. Biol., 157, 157-69.

Adam, R. D., Nigam, A., Seshadri, V., Martens, C. A., Farneth, G. A., Morrison, H. G., Nash, T. E., Porcella, S. F., and Patel, R. (2010). “The Giardia lamblia vsp gene repertoire: characteristics, genomic organization, and evolution.” BMC Genomics, 11(1), 424.

Alliegro, M. A., Henry, J. J., and Alliegro, M. C. (2010). “Rediscovery of the nucleolinus, a dynamic RNA-rich organelle associated with the nucleolus, spindle, and centrosomes.” Proc Natl Acad Sci U S A,   107(31), 13718-23.

Amaral-Zettler, L. A., Zettler, E. R., Theroux, S. M., Palacios, C., Aguilera, A., and Amils, R. (2010). ”Microbial community structure across the tree of life in the extreme Rio Tinto.” ISME J.

Amaral-Zettler, L., Artigas, L. F., Baross, J., Bharathi, L., Boetius, A., Chandramohan, D., Herndl, G., Kogure, K., Neal, P., Pedros-Alio, C., Ramette, A., Schouten, S., Stal, L., Thessen, A., de Leeuw, J., and Sogin, M. (2010). “A global census of marine microbes”, Life in the World’s Oceans: Diversity, Distribution and Abundance. Oxford: Blackwell Publishing Ltd., pp. 223-45.

Bodaker, I., Sharon, I., Suzuki, M. T., Feingersch, R., Shmoish, M., Andreishcheva, E., Sogin, M. L., Rosenberg, M., Maguire, M. E., Belkin, S., Oren, A., and Beja, O. (2010). “Comparative community genomics in the Dead Sea: an increasingly extreme environment.” ISME J, 399-407.

Bordenstein, S. R., Brothers, C., Wolfe, G., Bahr, M., Minckley, R. L., Clark, M. E., Wernegreen, J. J., Bordenstein, S. R., Reznikoff, W. S., and Werren, J. H. (2010). “Using the Wolbachia bacterial symbiont to teach inquiry-based science: A high school laboratory series.” The American Biology Teacher, 72, 478-83.

Brazelton, W. J., Ludwig, K. A., Sogin, M. L., Andreishcheva, E. N., Kelley, D. S., Shen, C. C., Edwards, R. L., and Baross, J. A. (2010). “Archaea and bacteria with surprising microdiversity show shifts in dominance over 1,000-year time scales in hydrothermal chimneys.” Proc Natl Acad Sci U S A, 107(4), 1612-7.

Chafee, M. E., Funk, D. J., Harrison, R. G., and Bordenstein, S. R. (2010). ”Lateral phage transfer in obligate intracellular bacteria (Wolbachia): verification from natural populations.” Mol Biol Evol, 27(3), 501-5.

Claessens, M., Wickham, S. A., Post, A. F., and Reuter, M. (2010). “A paradox of the ciliates? High cilate diversity in a resource-poor environment.” Mar. Biol., 157, 483-94.

Fei, D. L., Li, H., Kozul, C. D., Black, K. E., Singh, S., Gosse, J. A., DiRenzo, J., Martin, K. A., Wang, B., Hamilton, J. W., Karagas, M. R., and Robbins, D. J. (2010). “Activation of Hedgehog signaling by the environmental toxicant arsenic may contribute to the etiology of arsenic-induced tumors.” Cancer Res, 70(5), 1981-8.

Gast, R. J., Moran, D. M., Dennett, M. R., Wurtsbaugh, W. A., and Amaral-Zettler, L. A. (2010). ”Amoebae and pathogenic Legionella pneumophila in saline environments.” Journal of Water and Health, doi:10.2166/wh.2010.103.

German, C. R., Bowen, A., Coleman, M. L., Honig, D. L., Huber, J. A., Jakuba, M. V.,  Kinsey, J. C., Kurz, M. D., Leroy, S., McDermott, J. M., de Lepinay, B. M., Nakamura, K., Seewald, J. S., Smith, J. L, Sylva, S. P., Van Dover, C. L., Whitcomb, L. L., and Yoerger, D. R. (2010). “Diverse styles of submarine venting on the ultraslow spreading Mid-Cayman Rise.” Proc Natl Acad Sci U S A, 107, 14020-14025.

Gilg, I. C., Amaral-Zettler, L. A., Countway, P. D., Moorthi, S., Schnetzer, A., and Caron, D. A. (2010). ”Phylogenetic affiliations of mesopelagic acantharia and acantharian-like environmental 18S rRNA genes off the southern California coast.” Protist, 161(2), 197-211.

Gillor, O., Hadas, O., Post, A. F., and Belkin, S. (2010). “Phosphorus and nitrogen in a monomictic fresh water lake: a new insight into nutrient bioavailability.” Freshwater Biol., 55(3), 1182-90.

Gladyshev, E. A., and Arkhipova, I. R. (2010). ” Bdelloid rotifers”, McGraw Hill 2010 Yearbook of Science and Technology. New York, NY: McGraw Hill Inc., pp. 37-39.

Gladyshev, E. A., and Arkhipova, I. R. (2010). “A subtelomeric non-LTR retrotransposon Hebe in the bdelloid rotifer Adineta vaga is subject to inactivation by deletions but not 5′ truncations.” Mob DNA, 1(1), 12.

Gladyshev, E. A., and Arkhipova, I. R. (2010). “Genome structure of bdelloid rotifers: shaped by asexuality or desiccation?” J Hered, 101 Suppl 1, S85-93.

Gribble, K. E., Snell, T. W., and Mark Welch, D. B. (2010). “Gene and protein structure of the mate recognition protein gene family in Brachionus manjavacas (Rotifera).”Hydrobiologia, 662: 35–42.

Hasegawa, Y., Mark Welch, J. L., Valm, A. M., Rieken, C. W., Sogin, M. L., and Borisy, G. G. (2010). ”Imaging marine bacteria with unique 16S rRNA V6 sequences by fluorescence in situ hybridization and spectral analysis.” Geomicrobiology Journal, 27(3), 251-60.

Huber, J. A., Cantin, H.V., Huse, S. M., Mark Welch, D. B., Sogin, M. L., and Butterfield, D. A. (2010). ”Isolated communities of Epsilonproteobacteria in hydrothermal vent fluids of the Mariana Arc seamounts.” FEMS Microbiol Ecol, 538-49.

Huse, S. M., Mark Welch, D., Morrison, H. G., and Sogin, M. L. (2010). ”Ironing out the wrinkles in the rare biosphere through improved OTU clustering.” Environ Microbiol, 12, 1889-98.

Karpinets T. V., Obraztsova, A.Y., Wang, Y., Schmoyer, D. D., Kora, G. H., Park, B. H., Serres,  M. H. , Romine, M. F., Land, M. L., Kothe, T. B., Fredrickson, J. K., Nealson, K. H., Uberbacher, E. C. (2010) ”Conserved synteny at the protein family level reveals genes underlying Shewanella species’ cold tolerance and predicts their novel phenotypes.” Funct Integr Genomics, 10(1): 97-110.

Karpinets, T. V., Romine, M. F., Schmoyer, D. D., Kora, G. H., Syed, M. H., Leuze, M. R., Serres, M. H., Park, B. H., Samatova, N. F., and Uberbacher, E. C. (2010). “Shewanella knowledgebase: integration of the experimental data and computational predictions suggests a biological role for transcription of intergenic regions.” Database (Oxford), Jul6;2010:baq012.

Keeling, P. J., Corradi, N., Morrison, H. G., Haag, K. L., Ebert, D., Weiss, L. M., Akiyoshi, D. E., and Tzipori, S. (2010). “The Reduced Genome of the Parasitic Microsporidian Enterocytozoon bieneusi Lacks Genes for Core Carbon Metabolism.” Genome Biol Evol, 2, 304-9.

Lasek-Nesselquist, E., Welch, D. M., and Sogin, M. L. (2010). “The identification of a new Giardia duodenalis assemblage in marine vertebrates and a preliminary analysis of G. duodenalis population biology in marine systems.” Int J Parasitol, 40, 1063-74.

Lee, H. S., Komarova, Y. A., Nadezhdina, E. S., Anjum, R., Peloquin, J. G., Schober, J. M., Danciu, O., van Haren, J., Galjart, N., Gygi, S. P., Akhmanova, A., and Borisy, G. G. (2010). “Phosphorylation Controls Autoinhibition of CLIP-170.” Mol Biol Cell.

McLellan, S. L., Huse, S. M., Mueller-Spitz, S. R., Andreishcheva, E. N., and Sogin, M. L. (2010). ”Diversity and population structure of sewage-derived microorganisms in wastewater treatment plant influent.” Environ Microbiol, 12(2), 378-92.

Morf, L., Spycher, C., Rehrauer, H., Fournier, C. A., Morrison, H. G., and Hehl, A. B. (2010). “The transcriptional response to encystation stimuli in Giardia lamblia is restricted to a small set of genes.” Eukaryot Cell, 9(10), 1566-76.

Olins, A. L., Rhodes, G., Mark Welch, D. B., Zwerger, M., and Olins, D. E. (2010). ”Lamin B receptor: Multi-tasking at the nuclear envelope.” Nucleus 1: 53-70.

Parfrey, L. W., Grant, J., Tekle, Y. I., Lasek-Nesselquist, E., Morrison, H. G., Sogin, M. L., Patterson, D. J., and Katz, L. A. (2010). “Broadly sampled multigene analyses yield a well-resolved eukaryotic tree of life.” Syst Biol, 59(5), 518-33.

Smith, H., Mark Welch, D., and Snell, T. (2010). “Molecular evolution of the membrane associated progesterone receptor within the Brachionus plicatilis (Rotifera, Monogononta) species complex.” Hydrobiologia, 662:99–106.

Smith, J. L., Barrett, J. E., Tusnady, G., Rejto, L., and Cary, S. C. (2010). ”Resolving environmental drivers of microbial community structure in Antarctic soils.” Antarctic Science, 22(6), 673-80.

Stock, S.P., Bordenstein, S.R., Odden, J., Oldenburg, D., Reznikoff, W., Selosse, M.-A., and Werren, J.H. (2010).  Symbiosis instruction: Considerations from the Education Workshop at the 6th ISS Congress.  Symbiosis 51, 67-73.

Theroux, S. M., D’Andrea, W. D., Toney, J., Amaral-Zettler, L. A., and Huang, Y. (2010). ”Phylogenetic diversity and evolutionary relatedness of alkenone-producing haptophyte algae in lakes: Implications for continental paleotemperature reconstructions.” Earth and Planetary Science Letters, 300, 311-20.
Wankel, S. D., Chen, Y., Kendall, C., Post, A. F., and Paytan, A. (2010). “Sources of aerosol nitrate to the Gulf of Aqaba: evidence from δ15N and δ18O of nitrate and trace metal chemistry.” Marine Chem., 120 (1-4), 90-99.