2013 Publications

Akerboom J, Calderón NC, Tian L, Wabnig S, Prigge M, Tolö J, Gordus A, Orger MB, Severi KE, Macklin JJ, Patel R, Pulver SR, Wardill TJ, Fischer E, Schüler C, Chen T-W, Sarkisyan KS, Marvin JS, Bargmann CI, Kim DS, Kügler S, Lagnado L, Hegemann P, Gottschalk A, Schreiter ER, Looger LL. Genetically encoded calcium indicators for multi-color neural activity imaging and combination with optogenetics. Front Mol Neurosci. (2013) 6:2. http://dx.doi.org/10.3389/fnmol.2013.00002

Akkaynak, D., Allen, J. J., Mäthger, L. M., Chiao, C.-C., Hanlon, R. T. 2013. Quantification of cuttlefish (Sepia officinalis) camouflage in the eyes of fish predators: A study of color and luminance using in situ spectrometry. J. Comp. Physiol A. (published online Dec2012). 199, 211-225. doi: 10.1007/s00359-012-0785-3

Allen, J.J., Bell, G.R.R., Kuzirian, A.M., Hanlon, R.T. In press 2013. Cuttlefish skin papilla morphology suggests a muscular hydrostat function for rapid changeability. J Morphology 274 (6): xx DOI: 10.1002/jmor.20121

Anastassov, I., Shen, W., Ripps, H., and Chappell, R L. 2013. Zinc modulation of calcium activity at the photoreceptor terminal: a calcium imaging study. Experimental Eye Research. 112:37-44.

Asrican, B., Augustine, G.J., Berglund, K., Chen, S., Chow N., Deisseroth, K., Feng, G., Gloss, B., Hira, R., Hoffman, C., Kasai, H., Katarya, M., Kim, J., Kudolo, J., Lee, L.M., Lo, S.Q., Mancuso, J., Matsuzaki, M., Nakajima, R., Qiu, L., Tan, G., Tang, Y., Ting, J.T., Tsuda, S., Wen, L., Zhang, X. and Zhao, S. (2013) Next-generation transgenic mice for optogenetic analysis of neural circuits. Frontiers in Neural Circuits 7:160.

Basil, J.A and Crook, R.J. 2013. Evolution of behavioral and neural complexity: Learning and Memory in Chambered Nautilus. In “Cephalopod Cognition”, Eds. Darmaillacq, A., Dickel, L. and Mather, J.A. Cambridge University Press, UK.

Bell, G. B. B., Kuzirian, A. M., Senft, S. S., Mäthger, L. M., Wardill, T. J., Hanlon, R. T. 2013. Chromatophore radial muscle fibers anchor in flexible squid skin. Invertebrate Biology 132: 120-32. http://dx.doi.org/10.1111/ivb.12016

Chen T-W, Wardill TJ, Sun Y, Pulver SR, Renninger SL, Schreiter ER, Kerr RA, Orger MB, Jayaraman V, Looger LL, Svoboda K, Kim DS. Ultra-sensitive fluorescent protein sensors for neural activity. Nature (2013) 499: 295-300. http://dx.doi.org/10.1038/nature12354

Chiao, C.C., Ulmer, K.M., Siemann, L.A., Buresch, K.C., Chubb, C., Hanlon, R.T. 2013. How visual edge features influence cuttlefish camouflage patterning. Vision Research. doi: 10.1016/j.visres.2013.03.001

Coen, P.H. Elemans, Allen F. Mensinger and Lawrence C. Rome. Vocal production complexity correlates with neural instructions in the oyster toadfish (Opsanus tau). J Exp Biol  097444 First posted online February 27, 2014,doi:10.1242/jeb.097444

Crook, R.J. (2013). The welfare of invertebrates in research: Can science’s next generation improve their lot? J. Postdoct. Aff. 1(2), 9-20

Crook, R.J., and Basil, J.A. 2013. Flexible spatial orientation and navigational strategies in Chambered Nautilus. Ethology, 119(1), 77-85

Crook, R.J., Hanlon, R.T. and Walters, E.T. 2013. Squid have nociceptors that display widespread long-term sensitization and spontaneous activity after bodily injury. J. Neuroscience 33 (24): 10021-10026.

Hanlon, R.T., Buresch, K., Staudinger, M.D., and Moustahfid, H. In press 2013. Doryteuthis pealeii, Longfin inshore squid. In: Rosa, R., Pierce, G., and R. O’Dor (eds) Advances in Squid Biology, Ecology, and Fisheries. Nova Science Publishers, Inc. Hauppauge, NY.

Hanlon, R. T., Chiao, C.-C., Mäthger, L. M., Marshall, N. J. 2013. A fish-eye view of cuttlefish camouflage using in-situ spectrometry. Biological Journal of the Linnean Society 109 (3): 535-551.

Highstein SM, Holstein GR, Mann MA and Rabbitt RD. (2013) Evidence that Protons Act as Neurotransmitters at Vestibular Hair Cell Calyx Afferent Synapses.  to appear PNAS

Kreit, E., Mäthger, L., Hanlon, R.T., Dennis, P.B., Naik, R.R., Forsythe, E. and Heikenfeld, J. 2013. Biological vs. electronic adaptive coloration: how can one inform the other? Journal of the Royal Society Interface. (published online Nov2012). doi: 10.1098/rsif.2012.0601

Liu Q, Frerck MJ, Holman HA, Jorgensen EM and Rabbitt RD. (2013) Exciting Cell Membranes with a Blustering Heat Shock.  to appear Biophysical J.

Mäthger, L. M., Hanlon, R. T., Håkansson, J., Nilsson, D.-E. 2013. The W-shaped pupil in cuttlefish (Sepia officinalis): functions for improving horizontal vision. Vision Research 83, 19–24

Mäthger, L. M., Senft, S. L., Gao, M., Karaveli, S., Bell, G. R. R., Zia, R., Kuzirian, A. M., Dennis, P. B., Crookes-Goodson, W. J., Naik, R. R.,.Kattawar, G. W., Hanlon, R. T. 2013. Bright white scattering from protein spheres in color changing, flexible cuttlefish skin. Advanced Functional Materials. doi: 10.1002/adfm.201203705

Matthias, N., Robinson, M.A., Crook, R.J., Lockworth, C.R. and Goodwin, B.S. 2013. Local cryoanalgesia is effective for tail-tip biopsy in mice. JAALS, 52(2) 171-175

Mensinger, Allen F. Disruptive communication: stealth signaling in the toadfish. J Exp Biol 2014 217:344-350. First posted online October 10, 2013,doi:10.1242/jeb.090316

Morgan JR, Jiang J, Oliphint PA, Jin S, Gimenez LE, Busch DJ, Foldes AE, Zuo Y, Sousa R, Lafer EM.  Role for an Hsp70 nucleotide exchange factor in the regulation of synaptic vesicle endocytosis. 2013. Journal of Neuroscience.  33:8009-8021.

Nordstrom, Karin and Gonzalez-Bellido, Paloma T. 2013. Invertebrate Vision: Peripheral Adaptation to Repeated Object Motion. Current Biology. Volume 23, Issue 15, 5 August 2013, Pages R655–R656

P.T. Gonzalez-Bellido, T.J. Wardill, K.C. Buresch, K.M. Ulmer and R.T. Hanlon (2014). Expression of squid iridescence depends on environmental luminance and peripheral ganglion control. J. Exp. Biol. 217, 850-858; doi:10.1242/jeb.091884

Shashar, N. and Hanlon, R.T. In Press 2013. Spawning behavior dynamics at communal egg beds in the squid Doryteuthis (Loligo) pealeii (Mollusca: Cephalopoda). J. Experimental Marine Biology and Ecology

Smith JJ, Kuraku S, Holt C, Sauka-Spengler T, Jiang N, Campbell MS, Yandell MD, Manousaki T, Meyer A, Bloom OE, Morgan JR, Buxbaum JD, Sachidanadam R, Sims C, Garruss AS, Cook M, Krumlauf R, Wiedemann LM, Sower SA, Decatur WA, Hall JA, Amemiya CT, Saha NR, Buckley KM, Rast JP, Das S, Hirano M, McCurley N, Guo P, Rohner N, Tabin CJ, Piccinelli P, Elgar G, Ruffier M, Aken BL, Searle SMJ, Muffato M, Pignatelli M, Herrero J, Jones M, Brown CT, Chung-Davidson Y-W, Nanlohy KG, Libants SV, Yeh C-Y, McCauley DW, Langeland JA, Pancer Z, Fritzsch B, de Jong PJ, Zhu B, Fulton LL, Theising B, Flicek P, Bronner M, Warren WC, Clifton SW, Wilson RK, Li W. 2013. Sequencing of the sea lamprey (Petromyzon marinus) provides insights into vertebrate evolution.  Nature Genetics.  45:415-421. 

Tsuda S, Kee MZ, Cunha C, Kim J, Yan P, Lowe LM, Augustine GJ. (2013) Probing the function of neuronal populations: Combining micromirror-based optogenetic photosimulation iwth voltage-sensitive dye imaging. Neurosci Res. 75:76-81.

Ulmer, K.M., Buresch, K.C., Kossodo, M.M., Mäthger, L.M., Siemann, L.A., Hanlon, R.T. 2013. Visual background features in the vertical dimension have a strong influence on cuttlefish camouflage. Biological Bulletin 224(2): 110-118.

Wardill TJ, Chen T-W, Schreiter ER, Hasseman JP, Tsegaye G, Fosque BF, Behnam R, Shields BC, Ramirez M, Kimmel BE, Kerr RA, Jayaraman V, Looger LL, Svoboda K, Kim DS. A neuron-based screening platform for optimizing genetically-encoded calcium indicators. PLoS ONE (2013) 8: e77728. http://dx.doi.org/10.1371/journal.pone.0077728

Wardill, T.J., Gonzalez-Bellido, P.T., Crook, R.J. and Hanlon, R.T. 2013. Neural control of tuneable skin iridescence in squid. Proc. R. Soc. B. 279: 4243-4252. http://dx.doi.org/10.1098/rspb.2012.1374

Webb, JF. 2013. Morphological diversity, evolution and development of the mechanosensory lateral line system.  In: (Coombs S, and Bleckmann, H. eds) The Lateral Line. [Springer Handbook of Auditory Research] NY: Springer-Verlag. INVITED.

Wu. Z., Yang, Q., Crook, R.J., O’Neil, R.G. and Walters, E.T. 2013. TRPV1 channels make major contributions to behavioral hypersensitivity and spontaneous activity in nociceptors after spinal cord injury. Pain, In review

Zhu H, Tang X, Wei W, Maklad A, Mustain W, Rabbitt RD, Highstein SM, Allison J and Zhou W.  (2013) Input-output functions of vestibular afferent responses to air-conducted clicks in rats, JARO Feb 15(1): 73-86. doi:10.1007/s10162-013-0428-6. PMID: 24297262