2012 Publications

Akerboom J, Chen TW, Wardill TJ, Tian L, Marvin JS, Mutlu S, Calderon NC, Esposti F, Borghuis BG, Sun XR, Gordus A, Orger MB, Portugues R, Engert F, Macklin JJ, Filosa A, Aggarwal A, Kerr RA, Takagi R, Kracun S, Shigetomi E, Khakh BS, Baier H, Lagnado L, Wang SS, Bargmann CI, Kimmel BE, Jayaraman V, Svoboda K, Kim DS, Schreiter ER, Looger LL. 2012. Optimization of a GCaMP calcium indicator for neural activity imaging. J Neurosci 32: 13819-40. doi: 10.1523/JNEUROSCI.2601-12.2012

Albertin, C.B., Bonnaud, L., Brown, T.C., Crookes-Goodsen, W.J., da Fonseca, R.R., Di Cristo, C., Dilkes, B.P., Edsinger-Gonzales, E., Freeman, R.M., Hanlon, R.T., & 16 others. Cephalopod genomics: a plan of strategies and organization. Standards in Genomic Sciences 7: 175-188.

Allen, Justine J., George R. R. Bell, Alan M. Kuzirian, Roger T. Hanlon.  2012.  Cuttlefish skin papillae possess morphology suggesting a muscular hydrostatic function for rapid changeability. J. Morphol. (Accepted: in press, Dec 2012).

Angueyra, JM., Pulido, C., Malagón, G., Nasi, E., and Gomez, MdP. (2012) Melanopsin-expressing amphioxus photoreceptors transduce light via a phospholipase C signaling cascade. PLoS ONE. 7(1): e29813.

Barbosa, A., Allen, J. J., Mäthger, L. M. and Hanlon, R.T. 2012. Cuttlefish use visual cues to determine arm postures for camouflage. Proc Roy Soc B 279:84-90.

Basil, J.A., Barord, G., Crook, R.J., Derman, R., Ju, C.H., Travis, L. and Vargas, T. (2012) A synthetic approach to the study of learning and memory in Chambered Nautilus (Cephalopoda: Nautiloidea). Vie Et Milieaux, 61(4) 231-242

Bedi, SS, Lago, M., Crook, R.J., Grill, R and Walters, E.T. (2012) Spinal cord injury triggers an intrinsic growth-promoting state in nociceptors. J. Neurotrauma. 29(5) 925-935

Bednaršek, Nina; Tarling, Geraint; Bakker, Dorothee; Fielding, Sophie; Cohen, Ann; Kuzirian, Alan; McCorkle, Dan; Lézé, Bertrand; Montagna, Roberto.  2012.  Description and quantification of pteropod shell dissolution:  A sensitive bioindicator of ocean acidification.  Global Change Biology 18: 2378–2388.

Bednarsek, Nina, G.A. Tarling, D.G.E. Bakker, S. Fielding, E.M. Jones, H.J. Venables, P. Ward, A. Cohen, A.M. Kuzirian, B. Leze, D.C. McCorkle, E.J. Murphy.  2012.  Shelled-pteropods dissolve in response to anthropogenic acidification of the Southern Ocean.  Nature Geoscience DOI: 10.1038/NGEO1635.

Bianco, I. H., Ma, L.-H., Schoppik, D., Robson, D. R., Orger, M. B., Beck, J. C., Li, J. M., Schier, A.F., Engert, F. and Baker, R. The tangential nucleus controls a gravito-inertial vestibuloocular reflex. Curr. Biol. 22: 1-11, 2012.

Busch DJ and Morgan JR  (2012) Synuclein accumulation is associated with cell-specific neuronal death after spinal cord injury. Journal of Comparative Neurology 520: 1751-1771.

Camilo Ferrer, C., Malagón, G., Gomez, M., and Nasi, E. (2012) Dissecting the determinants of light sensitivity in amphioxus microvillar photoreceptors: possible evolutionary implications for melanopsin signaling. Journal of Neuroscience. 32:17977–17987

Chagnaud, B. P., Zee, M. C., Baker, R., and Bass A. H. Innovations in motoneuron synchrony drive rapid temporal modulations in vertebrate acoustic signaling. J Neurophysiol. 107: 3528-3542, 2012.

Chen Y.-P. and Chiao C.-C. Functional expression of ionotropic glutamate receptors in the rabbit retinal ganglion cells. Brain Research 1427:10-22 (2012).

Chiao C.C. and Hanlon R.T. 2013. Animal Camouflage. McGraw-Hill 2013 Yearbook pp. 21-25.

Chiao C.-C., Yang Y.-T., Huang Y.-T., Lin P.-K., and Wu C.-Y. Neural responses evoked by electrical stimulation in solar cell based subretinal prosthesis. Journal of Neuroscience and Neuroengineering 1:42-47 (2012).

Christensen-Dalsgaard, J., Carr, C.E., Madsen, P. T., Brandt, C., Willis, K., Christensen, C., Ketten, D., Edds-Walton, P., Fay, R.R. (2012) Underwater hearing in the red-eared slider turtle, Trachemys scripta elegans. Proc. R. Soc. B, doi:10.1098/rspb.2012.0290.

Chubb C, Scofield I, Chiao C-C, Sperling G (In press) A method for analyzing the dimensions of preattentive visual sensitivity, Journal of Mathematical Psychology

Edds-Walton, P.L., Rivera Matos, S., and Fay, R.R. (2012) Does the magnocellular octaval nucleus process auditory information in the toadfish, Opsanus tau. Journ. Comp. Physiol. A, DOI 10.1007/s00359-013-0799-5.

Fay, R.R. (2012) Listening in noise. In: Popper, A., and Hawkins, A. The Effect of Noise on Aquatic Life. Springer: New York, pp. 129-134.

Fay, R.R. (2012) The Sense of Hearing in Fishes. In: A.N. Popper and R.R. Fay (Eds.) Springer Handbook of Auditory Research. Vol. 50. In Press.

Fay, R.R. & Popper, A.N. (2012). Invited essay Fish Hearing – New Perspectives from Two “Senior” Bioacousticians.” Brain, Behavior and Evolution. (in press).

Gerlach, G., Buresch, K.C. and Hanlon, R.T. 2012. Population structure of the squid Doryteuthis (Loligo) pealeii on the eastern coast of the USA: comment on Shaw et al. (2010). Marine Ecology Progress Series 450: 281-283.

Gonzalez-Bellido PT, Wardill TJ. 2012. Labeling and confocal imaging of neurons in thick invertebrate tissue samples. Cold Spring Harb Protoc. http://dx.doi.org/10.1101/pdb.prot069625

Kreit, E., Mäthger, L. M., Hanlon, R. T., Dennis, P. B., Naik, R. R., Forsythe E., Heikenfeld, J. (2012). Biological versus electronic adaptive coloration: how can one inform the other? J. R. Soc. Interface. doi: 10.1098/rsif.2012.0601.

Ladich, F., and Fay, R.R. (2013) Auditory evoked potential audiometry in fish. Reviews in Fish Biology and Fisheries, DOI 10.1007/s11160-012-9297-z.

Lee Y.-H., Yan H.Y., and Chiao C.-C. Effects of early visual experience on the background preference in juvenile cuttlefish Sepia pharaonis. Biology Letters 8:740-743 (2012).

Manley, G., Narins, P., & Fay, R. (2012) Experiments in comparative hearing: Georg von Békésy and beyond. Special issue of Hearing Research celebrating Georg von Békésy. Hear. Res., 293, 44-50.

Mäthger, L.M. and Hanlon, R.T. 2012. Pigmentation or transparency? Camouflage tactics in deep-sea cephalopods. Pigment Cell and Melanoma Research 25 (3): 295-296.

Mäthger, L. M., Bell, G. R. R., Kuzirian, A. M., Allen, J. J., Hanlon, R. T. (2012). How does the blue-ringed octopus (Hapalochlaena lunulata) flash its blue rings? Journal of Experimental Biology. doi:10.1242/jeb.076869.

May, P. J., Vidal, P. P., B, Baker, H. and Baker, R. Physiological evidence for an inhibitory trigeminooculomotor pathway. J Comp. Neurol., 520: 2218-2240, 2012.

Mooney, TA, Hanlon, RT, Christensen-Dalsgaard, J, Madsen, PT, Ketten, DR, Nachtigall, PE (2012). “The potential for sound sensitivity in cephalopods.” In: The Effects of Noise on Aquatic Life (eds). Popper, A, Hawkins A. Springer Science+Business Media, LLC, New York.   pg 125-128.

Mooney, TA, Yamato, M**, and Branstetter, BK.  2012. Hearing in cetaceans: From natural history to experimental biology.  63: 197-246. Advances in Marine Biology. (invited review) *Cover Article.

Morgan MJ, Mareschal I, Chubb C, Solomon JA (2012) Perceived pattern regularity computed as a summary statistic: Implications for camouflage. Proceedings of the Royal Society B. 279, 2754–2760, doi:10.1098/rspb. 2011.2645

Nilsson, D.-E., Warrant, E. J., Hanlon, R. T., Shashar, N., and Johnsen, S. 2012. A unique advantage for giant eyes in giant squid. Current Biology 22 (8): 683-688.

Ou Y.-T., Lu M. S.-C., and Chiao C.-C. The effects of electrical stimulation on neurite outgrowth of goldfish retinal explants. Brain Research 1480:22-29 (2012).

Pulido, C., Malagón, G., Ferrer, C., Chen, JK., Angueyra, JM., Nasi, E., and Gomez MP. (2012). The light-sensitive conductance of melanopsin-expressing Joseph and Hesse cells in amphioxus. Journal of General Physiology. 139:19-30.

Schwalbe, MAB*, Bassett DK and Webb JF.  2012. Feeding in the dark: Lateral line mediated feeding behavior in the peacock cichlid, Aulonocara stuartgranti. Journal of Experimental Biology. 215: 2060-2071.

Strobel, SM* and Mooney, TA. 2012. Detection of low frequency tones and whale predator sounds by American sand lance Ammodytes americanus. 2012.  Journal of Fish Biology. DOI: 10.1111/j.1095-8649.2012.03423.x.

Wardill TJ, Gonzalez-Bellido PT, Crook RJ, Hanlon RT. 2012. Neural control of tuneable skin iridescence in squid. Proc. R. Soc. B. 279: 4243-52. doi: 10.1098/rspb.2012.1374

Wardill TJ, List O, Li X, Dongre S, McCulloch M, Ting CY, O’Kane CJ, Tang S, Lee CH, Hardie RC, Juusola M. 2012. Multiple spectral inputs improve motion discrimination in the Drosophila visual system. Science 336: 925-31. doi: 10.1126/science.1215317