2019 Publications

Peer-Reviewed Journal Articles

Bennice, C.O., Rayburn, A.P., Brooks, W.R., and Hanlon, R.T. (2019) Fine-scale habitat partitioning facilitates sympatry between two octopus species in a shallow Florida lagoon. Marine Ecology Progress Series 609:151-161. https://doi.org/10.3354/meps12845

Chanaday, N., Cousin, M., Milosevic, I., Watanabe, S., and Morgan, J.R. (2019) The synaptic vesicle cycle revisited: new insights into the modes and mechanisms. Journal of Neuroscience 39:8209-8216. https://doi.org/10.1523/JNEUROSCI.1158-19.2019.

Chandler, T., Shroff, H., Oldenbourg, R., and La Riviere, P. (2019) Spatio-angular fluorescence microscopy I. Basic Theory. Journal of the Optical Society of America A 36(8):1334-1345. https://doi.org/10.1364/JOSAA.36.001334

Chandler, T., Shroff, H., Oldenbourg, R., and La Riviere, P. (2019) Spatio-angular fluorescence microscopy II. Paraxial 4f imaging. Journal of the Optical Society of America A 36(8):1346-1360. https://doi.org/10.1364/JOSAA.36.001346

Colón-Ramos, D.A., La Riviere, P., Shroff, H., and Oldenbourg, R. (2019) Transforming the development and dissemination of cutting-edge microscopy and computation. Nature Methods 16(8):667-669. https://doi.org/10.1038/s41592-019-0475-y

Dion, M.F., Kapoor, M., Sun, Y., Wilson, S., Ryan, J., Vigouroux, A., van Teeffelen, S., Oldenbourg, R., and Garner, E.C. (2019) Bacillus subtilis cell diameter is determined by the opposing actions of two distinct cell wall synthetic systems. Nature Microbiology 4(8):1294-1305. https://doi.org/10.1038/s41564-019-0439-0

DuClos, K.T., Dabiri, J.O., Costello, J.H., Colin, S.P., Morgan, J.R., Fogerson, S.M., and Gemmell, B.J. (2019) Thrust generation during steady swimming and acceleration from rest.  Journal of Experimental Biology 222(Pt 22). pii: jeb212464. https://doi: 10.1241/jeb.212464.

Geffeney, S.L., Williams, B.L., Rosenthal, J.J.C., Birk, M.A., Felkins, J., Wisell, C.M., Curry, E.R., and Hanifin, C.T. (2019) Convergent and parallel evolution in a voltage-gated sodium channel underlies TTX-resistance in the Greater Blue-ringed Octopus: Hapalochlaena lunulata. Toxicon 170:77-84. https://doi.org/10.1016/j.toxicon.2019.09.013

Gibson, A., Laubichler, M.D., and Maienschein, J. (2019) Computational history and philosophy of science. Isis 110:497-501. https://doi.org/10.1086/705542

Hanslik, K.L., Allen, S.R., Harkenrider, T.L., Fogerson, S.M., Guadarrama, E., and Morgan, J.R. (2019) Regenerative capacity in the lamprey spinal cord is not altered after a repeated transection. PLoS One 14(1): e0204193. https://doi.org/10.1371/journal.pone.0204193

Horb, M., Wlizla, M., Abu-Daya, A., McNamara, S., Gajdasik, D., Noble, A., Team NBRP, Team CRBX, Robert, J., James-Zorn, C., and Guille, M.J. (2019) Xenopus resources: transgenic, inbred and mutant animals, training opportunities, and web-based support. Frontiers in Physiology, https://doi.org/10.3389/fphys.2019.00387

Iglesias, T.L., Boal, J.G., Frank, M.G., Zeil, J., and Hanlon, R.T. (2019) Cyclic nature of the REM-like state in the cuttlefish Sepia officinalis. Journal of Experimental Biology 222. https://doi.org/10.1242/jeb.174862

Koganti, L., Liu, J., DeMajewski, A., Agostini, M.A., Wong, T.W., Faber, D.S., and Zottoli, S.J. (2019) Invasion of microglia/macrophages and granulocytes into the Mauthner axon myelin sheath following spinal cord injury of the adult goldfish, Carassius auratus. Journal of Morphology 281:135-152. https://doi.org/10.1002/jmor.21086

Kuehn, E., Stockinger, A.W., Girard, J., Raible, F., and Özpolat, B.D. (2019) A scalable culturing system for the marine annelid Platynereis dumeriliiPLoS ONE 14(12): e0226156. https://doi.org/10.1371/journal.pone.0226156

Laubichler, M.D., Maienschein, J., and Renn, J. (2019) Computational history of knowledge: Challenges and opportunities. Isis 110:502-512. https://doi.org/10.1086/705544

Lutz, H., Ramirez-Puebla, T., Abbo, L., Durand, A., Schlundt, C., Gottel, N., Sjaarda, A., Hanlon, R.T., Gilbert, J.A., and Mark Welch, J.L. (2019) A simple microbiome in the European common cuttlefish, Sepia officinalis. mSystems 4:e00177-19. https://doi.org/10.1128/mSystems.00177-19

MacCord, K. (2019) The impacts of assumptions on theories of tooth development and evolution at the turn of the nineteenth century. History and Philosophy of the Life Sciences 41:12. https://doi.org/10.1007/s40656-019-0245-2

MacCord, K., and Maienschein, J. (2019) Understanding regeneration at different scales. Elife 8, e46569. https://doi.org/10.7554/elife.46569

Marian, J.E.A.R., Apostolico, L.H., Chiao, C.-C., Hanlon, R.T., Hirohashi, N., Iwata, Y., Mather, J., Sato, N. and Shaw, P. (2019) Male alternative reproductive tactics and associated evolution of anatomical characteristics in loliginid squid. Frontiers in Physiology 10:1281. https://doi.org/10.3389/fphys.2019.01281

Messerli, M.A., Raihan, M.J., Kobylkevich, B.M., Benson, A.C., Bruening, K.S., Shribak, M., Rosenthal, J.J.C., and Sohn, J.J. (2019) Construction and composition of the squid pen from Doryteuthis pealeii. Biological Bulletin 237(1):1-15. https://doi.org/10.1086/704209

Montiel-Gonzalez, M.R., Diaz Quiroz, J.F., and Rosenthal, J.J.C. (2019) Current strategies for site-directed RNA editing using ADARs. Methods 156:16-24. https://doi.org/10.1016/j.ymeth.2018.11.016

Nagashima, R., Hibino, K., Ashwin, S.S., Babokhov, M., Fujishiro, S., Imai, R., Nozaki, T., Tamura, S., Tani, T., Kimura, H., Shribak, M., Kanemaki, M.T., Sasai, M., and Maeshima, K. (2019) Single nucleosome imaging reveals loose genome chromatin networks via active RNA polymerase II. Journal of Cell Biology 218(5):1511-1530. https://doi.org/10.1083/jcb.201811090

Nakamura, M., Yoshida, H., Takahashi, E., Wlizla, M., Takebayashi-Suzuki, K., Horb, M.E., and Suzuki, A. (2019) The AP-1 transcription factor JunB functions in Xenopus tail regeneration by positively regulating cell proliferation. Biochemical and Biophysical Research Communications, Dec 4, pii: S0006-291X(19)32180-1. https://doi: 10.1016/jbbrc.2019.11.060. [Epub ahead of print]

Ritschard, E.A., Whitelaw, B., Albertin, C.B., Cooke, I.R., Strugnell, J.M., and Simakov, O. (2019) Coupled genomic evolutionary histories as signatures of organismal innovations in cephalopods. BioEssays 41(12).  https://doi: 10.1002/bies.201900073

Sabin, K.Z., Jiang, P. Gearhart, M.D., Stewart, R., and Echeverri, K. (2019) AP-1cFos/JunB/miR-200a regulate the pro-regenerative glial cell response during axolotl spinal cord regeneration. Communications Biology 2(91). https://doi.org/10.1038/s42003-019-0335-4

Sánchez-García, M.A., Zottoli, S.J., and Roberson, L.M. (2019) Hypoxia has a lasting effect on fast-startle behavior of the tropical fish Haemulon plumieri. Biological Bulletin 237(1):48-62. https://doi.org/10.1086/704337

Schnell, A.K., Jozet-Alves, C., Hall, K.C., Radday, L., and Hanlon, R.T. (2019) Fighting and mating success in giant Australian cuttlefish is influenced by behavioural lateralization. Proceedings of the Royal Society B: Biological Sciences 286(1898):20182507. https://doi.org/10.1098/rspb.2018.2507

Williams, T.L., Senft, S.L., Yeo, J., Martín-Martínez, F.J., Kuzirian, A.M., Martin, C.A., DiBona, C.W., Chen, C.T., Dinneen, S.R., Nguyen, H.T., Gomes, C.M., Rosenthal, J.J.C., MacManes, M.D., Chu, F., Buehler, M.J., Hanlon, R.T., and Deravi, L.F. (2019) Dynamic pigmentary and structural coloration within cephalopod chromatophore organs. Nature Communications 10(1):1004. https://doi.org/10.1038/s41467-019-08891-x