Recent MBL Publications

(as of April 23, 2018)

Lu, X., Liu, Z., An, S., Miralles, D. G., Maes, W., Liu, Y., & Tang, J. (2018). Potential of solar-induced chlorophyll fluorescence to estimate transpiration in a temperate forest. AGRICULTURAL AND FOREST METEOROLOGY, 252, 75-+. doi: 10.1016/j.agrforrnet.2018.01.017

Yoshizawa, T., Ali, R., Jiou, J., Fung, H. Y. J., Burke, K. A., Kim, S. J., Lin, Y., Peeples, W. B., Saltzberg, D., Soniat, M., Baumhardt, J. M., Oldenbourg, R., Sali, A., Fawzi, N. L., Rosen, M. K., & Chook, Y. M. (2018). Nuclear Import Receptor Inhibits Phase Separation of FUS through Binding to Multiple Sites. Cell, 173(3), 693-705.e622. doi: 10.1016/j.cell.2018.03.003

Arenas, O., Osorno, T., Malagon, G., Pulido, C., Gomez, M. D., & Nasi, E. (2018). Molecular and functional identification of a novel photopigment in Pecten ciliary photoreceptors. JOURNAL OF GENERAL PHYSIOLOGY, 150(3), 401-415. doi: 10.1085/jgp.201711938

Asmus, A., Koltz, A., McLaren, J., Shaver, G. R., & Gough, L. (2018). Long-term nutrient addition alters arthropod community composition but does not increase total biomass or abundance. OIKOS, 127(3), 460-471. doi: 10.1111/oik.04398

Corkins, M. E., Hanania, H. L., Krneta-Stankic, V., DeLay, B. D., Pearl, E. J., Lee, M., Ji, H., Davidson, A. J., Horb, M. E., & Miller, R. K. (2018). Transgenic Xenopus laevis Line for In Vivo Labeling of Nephrons within the Kidney. Genes (Basel), 9(4). doi: 10.3390/genes9040197

Fan, J., Luo, R., Liu, D., Chen, Z., Luo, J., Boland, N., Tang, J., Hao, M., McConkey, B., & Ding, W. (2018). Stover retention rather than no-till decreases the global warming potential of rainfed continuous maize cropland. FIELD CROPS RESEARCH, 219, 14-23. doi: 10.1016/j.fcr.2018.01.023

Gilbert, J. A., Blaser, M. J., Caporaso, J. G., Jansson, J. K., Lynch, S. V., & Knight, R. (2018). Current understanding of the human microbiome. Nat Med, 24(4), 392-400. doi: 10.1038/nm.4517

Gulson, B., Kamenov, G. D., Manton, W., & Rabinowitz, M. (2018). Concerns about Quadrupole ICP-MS Lead Isotopic Data and Interpretations in the Environment and Health Fields. Int J Environ Res Public Health, 15(4). doi: 10.3390/ijerph15040723

Langdon, E. M., Qiu, Y., Ghanbari Niaki, A., McLaughlin, G. A., Weidmann, C., Gerbich, T. M., Smith, J. A., Crutchley, J. M., Termini, C. M., Weeks, K. M., Myong, S., & Gladfelter, A. S. (2018). MRNA structure determines specificity of a polyQ-driven phase separation. SCIENCE. doi: 10.1126/science.aar7432

Pearse, W. D., Cavender-Bares, J., Hobbie, S. E., Avolio, M. L., Bettez, N., Chowdhury, R. R., Darling, L. E., Groffman, P. M., Grove, J. M., Hall, S. J., Heffernan, J. B., Learned, J., Neill, C., Nelson, K. C., Pataki, D. E., Ruddell, B. L., Steele, M. K., & Trammell, T. L. E. (2018). Homogenization of plant diversity, composition, and structure in North American urban yards. ECOSPHERE, 9(2). doi: 10.1002/ecs2.2105

Folino-Rorem, N. C., & Renken, C. J. (2018). Effects of salinity on the growth and morphology of the invasive, euryhaline hydroid Cordylophora (Phylum Cnidaria, Class Hydrozoa). INVERTEBRATE BIOLOGY, 137(1), 78-90. doi: 10.1111/ivb.12207

Kirby, A., Lewbart, G. A., Hancock-Ronemus, A., & Papich, M. G. (2018). Pharmacokinetics of enrofloxacin and ciprofloxacin in Atlantic horseshoe crabs (Limulus polyphemus) after single injection. J Vet Pharmacol Ther, 41(2), 349-353. doi: 10.1111/jvp.12462

Letelier, J., de la Calle-Mustienes, E., Pieretti, J., Naranjo, S., Maeso, I., Nakamura, T., Pascual-Anaya, J., Shubin, N. H., Schneider, I., Martinez-Morales, J. R., & Gómez-Skarmeta, J. L. (2018). A conserved Shh cis-regulatory module highlights a common developmental origin of unpaired and paired fins. Nat Genet. doi: 10.1038/s41588-018-0080-5

Schnytzer, Y., Simon-Blecher, N., Li, J., Ben-Asher, H. W., Salmon-Divon, M., Achituv, Y., Hughes, M. E., & Levy, O. (2018). Tidal and diel orchestration of behaviour and gene expression in an intertidal mollusc. Sci Rep, 8(1), 4917. doi: 10.1038/s41598-018-23167-y

Valiela, I., Pascual, J., Giblin, A., Barth-Jensen, C., Martinetto, P., Otter, M., Stone, T., Tucker, J., Bartholomew, M., & Viana, I. G. (2018). External and local controls on land-sea coupling assessed by stable isotopic signatures of mangrove producers in estuaries of Pacific Panama. Mar Environ Res. doi: 10.1016/j.marenvres.2018.03.003

Cardon, Z. G., Peredo, E. L., Dohnalkova, A. C., Gershone, H. L., & Bezanilla, M. (2018). A model suite of green algae within the Scenedesmaceae for investigating contrasting desiccation tolerance and morphology. J Cell Sci. doi: 10.1242/jcs.212233

Kumar, D., Thomason, R. T., Yankova, M., Gitlin, J. D., Mains, R. E., Eipper, B. A., & King, S. M. (2018). Microvillar and ciliary defects in zebrafish lacking an actin-binding bioactive peptide amidating enzyme. Sci Rep, 8(1), 4547. doi: 10.1038/s41598-018-22732-9

Liu, X. Y., Koba, K., Koyama, L. A., Hobbie, S. E., Weiss, M. S., Inagaki, Y., Shaver, G. R., Giblin, A. E., Hobara, S., Nadelhoffer, K. J., Sommerkorn, M., Rastetter, E. B., Kling, G. W., Laundre, J. A., Yano, Y., Makabe, A., Yano, M., & Liu, C. Q. (2018). Nitrate is an important nitrogen source for Arctic tundra plants. Proc Natl Acad Sci U S A. doi: 10.1073/pnas.1715382115

Nelson, F. E., Hollingworth, S., Marx, J. O., Baylor, S. M., & Rome, L. C. (2018). Small Ca2+releases enable hour-long high-frequency contractions in midshipman swimbladder muscle. J Gen Physiol, 150(1), 127-143. doi: 10.1085/jgp.201711760

Booge, D., Schlundt, C., Bracher, A., Endres, S., Zancker, B., & Marandino, C. A. (2018). Marine isoprene production and consumption in the mixed layer of the surface ocean – a field study over two oceanic regions. BIOGEOSCIENCES, 15(2), 649-667. doi: 10.5194/bg-15-649-2018

Chen, Z. Q., Chen, J. M., Zhang, S. P., Zheng, X. G., Ju, W. M., Mo, G., & Lu, X. L. (2017). Optimization of Terrestrial Ecosystem Model Parameters Using Atmospheric CO2 Concentration Data With the Global Carbon Assimilation System (GCAS). JOURNAL OF GEOPHYSICAL RESEARCH-BIOGEOSCIENCES, 122(12), 3218-3237. doi: 10.1002/2016JG003716

Field, C. M., & Mitchison, T. J. (2018). Assembly of Spindles and Asters inXenopusEgg Extracts. Cold Spring Harb Protoc. doi: 10.1101/pdb.prot099796

Mackey, K. R. M., Hunter-Cevera, K., Britten, G. L., Murphy, L. G., Sogin, M. L., & Huber, J. A. (2017). Seasonal Succession and Spatial Patterns of Synechococcus Microdiversity in a Salt Marsh Estuary Revealed through 16S rRNA Gene Oligotyping. Front Microbiol, 8, 1496. doi: 10.3389/fmicb.2017.01496

Monier, E., Paltsev, S., Sokolov, A., Chen, Y. H. H., Gao, X., Ejaz, Q., Couzo, E., Schlosser, C. A., Dutkiewicz, S., Fant, C., Scott, J., Kicklighter, D., Morris, J., Jacoby, H., Prinn, R., & Haigh, M. (2018). Toward a consistent modeling framework to assess multi-sectoral climate impacts. Nat Commun, 9(1), 660. doi: 10.1038/s41467-018-02984-9

Park, J. H., Riviere, I., Gonen, M., Wang, X., Senechal, B., Curran, K. J., Sauter, C., Wang, Y., Santomasso, B., Mead, E., Roshal, M., Maslak, P., Davila, M., Brentjens, R. J., & Sadelain, M. (2018). Long-Term Follow-up of CD19 CAR Therapy in Acute Lymphoblastic Leukemia. N Engl J Med, 378(5), 449-459. doi: 10.1056/NEJMoa1709919

Patterson, A. E., Arkebauer, R., Quallo, C., Heskel, M. A., Li, X., Boelman, N., & Griffin, K. L. (2018). Temperature response of respiration and respiratory quotients of 16 co-occurring temperate tree species. Tree Physiol. doi: 10.1093/treephys/tpx176

Qiu, C., Zhu, D., Ciais, P., Guenet, B., Krinner, G., Peng, S., Aurela, M., Bernhofer, C., Bruemmer, C., Bret-Harte, S., Chu, H., Chen, J., Desai, A. R., Dusek, J., Euskirchen, E. S., Fortuniak, K., Flanagan, L. B., Friborg, T., Grygoruk, M., Gogo, S., Gruenwald, T., Hansen, B. U., Holl, D., Humphreys, E., Hurkuck, M., Kiely, G., Klatt, J., Kutzbach, L., Largeron, C., Laggoun-Defarge, F., Lund, M., Lafleur, P. M., Li, X., Mammarella, I., Merbold, L., Nilsson, M. B., Olejnik, J., Ottosson-Lofvenius, M., Oechel, W., Parmentier, F. J. W., Peichl, M., Pirk, N., Peltola, O., Pawlak, W., Rasse, D., Rinne, J., Shaver, G., Schmid, H. P., Sottocornola, M., Steinbrecher, R., Sachs, T., Urbaniak, M., Zona, D., & Ziemblinska, K. (2018). ORCHIDEE-PEAT (revision 4596), a model for northern peatland CO2, water, and energy fluxes on daily to annual scales. GEOSCIENTIFIC MODEL DEVELOPMENT, 11(2), 497-519. doi: 10.5194/gmd-11-497-2018

Valiela, I., Elmstrom, E., Lloret, J., Stone, T., & Camilli, L. (2018). Tropical land-sea couplings: Role of watershed deforestation, mangrove estuary processing, and marine inputs on N fluxes in coastal Pacific Panama. Sci Total Environ, 630, 126-140. doi: 10.1016/j.scitotenv.2018.02.189

Vallecillo-Viejo, I. C., Liscovitch-Brauer, N., Montiel-Gonzalez, M. F., Eisenberg, E., & Rosenthal, J. J. C. (2018). Abundant off-target edits from site-directed RNA editing can be reduced by nuclear localization of the editing enzyme. RNA Biol, 15(1), 104-114. doi: 10.1080/15476286.2017.1387711

Jaspers, C., Costello, J. H., Sutherland, K. R., Gemmell, B., Lucas, K. N., Tackett, J., Dodge, K., & Colin, S. P. (2018). Resilience in moving water: Effects of turbulence on the predatory impact of the lobate ctenophore Mnemiopsis leidyi. LIMNOLOGY AND OCEANOGRAPHY, 63(1), 445-458. doi: 10.1002/lno.10642

Mayorova, T. D., Smith, C. L., Hammar, K., Winters, C. A., Pivovarova, N. B., Aronova, M. A., Leapman, R. D., & Reese, T. S. (2018). Cells containing aragonite crystals mediate responses to gravity in Trichoplax adhaerens (Placozoa), an animal lacking neurons and synapses. PLOS ONE, 13(1). doi: 10.1371/journal.pone.0190905

Arenas, O., Osorno, T., Malagon, G., Pulido, C., Gomez, M. D. P., & Nasi, E. (2018). Molecular and functional identification of a novel photopigment in Pecten ciliary photoreceptors. J Gen Physiol. doi: 10.1085/jgp.201711938

Delmont, T. O., & Eren, A. M. (2018). Linking pangenomes and metagenomes: the Prochlorococcus metapangenome. PeerJ, 6, e4320. doi: 10.7717/peerj.4320

Enos, B. G., Anthony, M. K., DeGiorgis, J. A., & Williams, L. E. (2018). Prey Range and Genome Evolution of Halobacteriovorax marinus Predatory Bacteria from an Estuary. mSphere, 3(1). doi: 10.1128/mSphere.00508-17

Laubichler, M. D., Prohaska, S. J., & Stadler, P. F. (2018). Toward a mechanistic explanation of phenotypic evolution: The need for a theory of theory integration. J Exp Zool B Mol Dev Evol. doi: 10.1002/jez.b.22785

Özpolat, B. D., Handberg-Thorsager, M., Vervoort, M., & Balavoine, G. (2017). Cell lineage and cell cycling analyses of the 4d micromere using live imaging in the marine annelid Platynereis dumerilii. Elife, 6. doi: 10.7554/eLife.30463

Peredo, E. L., & Simmons, S. L. (2018). Leaf-FISH: Microscale Imaging o Bacterial Taxa on Phyllosphere. FRONTIERS IN MICROBIOLOGY, 8(ARTN 2669). doi: 10.3389/fmicb.2017.02669

Poon, E. N. Y., Hao, B., Guan, D., Li, M. J., Lu, J., Yang, Y., Wu, B., Wu, S. C. M., Webb, S. E., Liang, Y., Miller, A. L., Yao, X., Wang, J., Yan, B., & Boheler, K. R. (2018). Integrated transcriptomic and regulatory network analyses identify microRNA-200c as a novel repressor of human pluripotent stem cell-derived cardiomyocyte differentiation and maturation. Cardiovasc Res. doi: 10.1093/cvr/cvy019

Reveillaud, J., Anderson, R., Reves-Sohn, S., Cavanaugh, C., & Huber, J. A. (2018). Metagenomic investigation of vestimentiferan tubeworm endosymbionts from Mid-Cayman Rise reveals new insights into metabolism and diversity. Microbiome, 6(1), 19. doi: 10.1186/s40168-018-0411-x

Vachula, R. S., & Richter, N. (2018). Informing sedimentary charcoal-based fire reconstructions with a kinematic transport model. Holocene, 28(1), 173-178. doi: 10.1177/0959683617715624

Castner, E. A., Leach, A. M., Leary, N., Baron, J., Compton, J. E., Galloway, J. N., Hastings, M. G., Kimiecik, J., Lantz-Trissel, J., de la Reguera, E., & Ryals, R. (2017). The Nitrogen Footprint Tool Network: A Multi-Institution Program To Reduce Nitrogen Pollution. Sustainability (New Rochelle), 10(2), 79-88. doi: 10.1089/sus.2017.29098.eac

de la Reguera, E., Castner, E. A., Galloway, J. N., Leach, A. M., Leary, N., & Tang, J. (2017). Defining System Boundaries of an Institution Nitrogen Footprint. Sustainability (New Rochelle), 10(2), 123-130. doi: 10.1089/sus.2017.29100.edlr

Herman, P. E., Papatheodorou, A., Bryant, S. A., Waterbury, C. K. M., Herdy, J. R., Arcese, A. A., Buxbaum, J. D., Smith, J. J., Morgan, J. R., & Bloom, O. (2018). Highly conserved molecular pathways, including Wnt signaling, promote functional recovery from spinal cord injury in lampreys. Sci Rep, 8(1), 742. doi: 10.1038/s41598-017-18757-1

Leary, N., de la Reguera, E., Fitzpatrick, S., & Boggiano-Peterson, O. (2017). Reducing the Nitrogen Footprint of a Small Residential College. Sustainability (New Rochelle), 10(2), 96-104. doi: 10.1089/

Malamy, J. E., & Shribak, M. (2018). An orientation-independent DIC microscope allows high resolution imaging of epithelial cell migration and wound healing in a cnidarian model. J Microsc. doi: 10.1111/jmi.12682

Chandler, T., Mehta, S., Shroff, H., Oldenbourg, R., & La Riviere, P. J. (2017). Single-fluorophore orientation determination with multiview polarized illumination: modeling and microscope design. OPTICS EXPRESS, 25(25), 31309-31325. doi: 10.1364/OE.25.031309

Crump, B. C., Fine, L. M., Fortunato, C. S., Herfort, L., Needoba, J. A., Murdock, S., & Prahl, F. G. (2017). Quantity and quality of particulate organic matter controls bacterial production in the Columbia River estuary. LIMNOLOGY AND OCEANOGRAPHY, 62(6), 2713-2731. doi: 10.1002/lno.10601

Hanlon, R., Mathger, L. M., Bell, G. R. R., Kuzirian, A. M., & Senft, S. L. (2017). White reflection from cuttlefish skin leucophores. Bioinspir Biomim. doi: 10.1088/1748-3190/aaa3a9

Medeiros, A. T., Soll, L. G., Tessari, I., Bubacco, L., & Morgan, J. R. (2017). alpha-Synuclein Dimers Impair Vesicle Fission during Clathrin-Mediated Synaptic Vesicle Recycling. FRONTIERS IN CELLULAR NEUROSCIENCE, 11(ARTN 388). doi: 10.3389/fncel.2017.00388

Nelson, F. E., Hollingworth, S., Marx, J. O., Baylor, S. M., & Rome, L. C. (2017). Small Ca2+ releases enable hour-long high-frequency contractions in midshipman swimbladder muscle. J Gen Physiol. doi: 10.1085/jgp.201711760

Sepehri Rad, M., Choi, Y., Cohen, L. B., Baker, B. J., Zhong, S., Storace, D. A., & Braubach, O. R. (2017). Voltage and Calcium Imaging of Brain Activity. Biophys J, 113(10), 2160-2167. doi: 10.1016/j.bpj.2017.09.040

Wang, F. M., Ding, Y. Z., Sayer, E. J., Li, Q. L., Zou, B., Mo, Q. F., Li, Y. W., Lu, X. L., Tang, J. W., Zhu, W. X., & Li, Z. A. (2017). Tropical forest restoration: Fast resilience of plant biomass contrasts with slow recovery of stable soil C stocks. FUNCTIONAL ECOLOGY, 31(12), 2344-2355. doi: 10.1111/1365-2435.12925

Zamponi, E., Buratti, F., Cataldi, G., Caicedo, H. H., Song, Y., Jungbauer, L. M., LaDu, M. J., Bisbal, M., Lorenzo, A., Ma, J., Helguera, P. R., Morfini, G. A., Brady, S. T., & Pigino, G. F. (2017). Prion protein inhibits fast axonal transport through a mechanism involving casein kinase 2. PLOS ONE, 12(12), e0188340. doi: 10.1371/journal.pone.0188340

DeLay, B. D., Corkins, M. E., Hanania, H. L., Salanga, M., Deng, J. M., Sudou, N., Taira, M., Horb, M., & Miller, R. K. (2017). Tissue-specific Gene Inactivation in Xenopus laevis: Knockout of lhx1 in the Kidney with CRISPR/Cas9. Genetics. doi: 10.1534/genetics.117.300468

Fortunato, C. S., Larson, B., Butterfield, D. A., & Huber, J. A. (2017). Spatially distinct, temporally stable microbial populations mediate biogeochemical cycling at and below the seafloor in hydrothermal vent fluids. Environ Microbiol. doi: 10.1111/1462-2920.14011

Gemmell, B. J., Colin, S. P., & Costello, J. H. (2017). Widespread utilization of passive energy recapture in swimming medusae. J Exp Biol. doi: 10.1242/jeb.168575

Hasegawa, Y., Mark Welch, J. L., Rossetti, B. J., & Borisy, G. G. (2017). Preservation of three-dimensional spatial structure in the gut microbiome. PLOS ONE, 12(11), 1-16. doi: 10.1371/journal.pone.0188257

Huang, W. Y. C., Ditlev, J. A., Chiang, H. K., Rosen, M. K., & Groves, J. T. (2017). Allosteric Modulation of Grb2 Recruitment to the Intrinsically Disordered Scaffold Protein, LAT, by Remote Site Phosphorylation. J Am Chem Soc, 139(49), 18009-18015. doi: 10.1021/jacs.7b09387

Liebeskind, B. J., Hofmann, H. A., Hillis, D. M., & Zakon, H. H. (2017). Evolution of Animal Neural Systems. In D. J. Futuyma (Ed.), (pp. 377-398): ANNUAL REVIEWS.