Recent MBL Publications

(as of November 7, 2017)

Spira, F., Cuylen-Haering, S., Mehta, S., Samwer, M., Reversat, A., Verma, A., Oldenbourg, R., Sixt, M., & Gerlich, D. W. (2017). Cytokinesis in vertebrate cells initiates by contraction of an equatorial actomyosin network composed of randomly oriented filaments. Elife, 6. doi: 10.7554/eLife.30867

Tully, B. J., Wheat, C. G., Glazer, B. T., & Huber, J. A. (2017). A dynamic microbial community with high functional redundancy inhabits the cold, oxic subseafloor aquifer. ISME J. doi: 10.1038/ismej.2017.187

Vallecillo-Viejo, I. C., Liscovitch-Brauer, N., Montiel-Gonzalez, M. F., Eisenberg, E., & Rosenthal, J. J. C. (2017). Abundant off-target edits from site-directed RNA editing can be reduced by nuclear localization of the editing enzyme. RNA Biol, 0. doi: 10.1080/15476286.2017.1387711

Anderson, R. E., Reveillaud, J., Reddington, E., Delmont, T. O., Eren, A. M., McDermott, J. M., Seewald, J. S., & Huber, J. A. (2017). Genomic variation in microbial populations inhabiting the marine subseafloor at deep-sea hydrothermal vents. Nat Commun, 8(1), 1114. doi: 10.1038/s41467-017-01228-6

Carbone, C. B., Kern, N., Fernandes, R. A., Hui, E., Su, X., Garcia, K. C., & Vale, R. D. (2017). In vitro reconstitution of T cell receptor-mediated segregation of the CD45 phosphatase. Proceedings of the National Academy of Sciences. doi: 10.1073/pnas.1710358114

Chafee, M., Fernàndez-Guerra, A., Buttigieg, P. L., Gerdts, G., Eren, A. M., Teeling, H., & Amann, R. I. (2017). Recurrent patterns of microdiversity in a temperate coastal marine environment. ISME J. doi: 10.1038/ismej.2017.165

Delmont, T. O., & Eren, A. M. (2017). Simulations predict microbial responses in the environment? This environment disagrees retrospectively. Proc Natl Acad Sci U S A, 114(43), E8947-E8949. doi: 10.1073/pnas.1712186114

Hubbard, C. J., Brock, M. T., van Diepen, L. T., Maignien, L., Ewers, B. E., & Weinig, C. (2017). The plant circadian clock influences rhizosphere community structure and function. ISME J. doi: 10.1038/ismej.2017.172

Kirby, A., Lewbart, G. A., Hancock-Ronemus, A., & Papich, M. G. (2017). Pharmacokinetics of enrofloxacin and ciprofloxacin in Atlantic horseshoe crabs (Limulus polyphemus) after single injection. J Vet Pharmacol Ther. doi: 10.1111/jvp.12462

Liang, L. L., Arcus, V. L., Heskel, M. A., O’Sullivan, O. S., Weerasinghe, L. K., Creek, D., Egerton, J. J. G., Tjoelker, M. G., Atkin, O. K., & Schipper, L. A. (2017). Macromolecular Rate Theory (MMRT) Provides a Thermodynamics Rationale to Underpin the Convergent Temperature Response in Plant Leaf Respiration. Glob Chang Biol. doi: 10.1111/gcb.13936

Mark Welch, J. L., Hasegawa, Y., McNulty, N. P., Gordon, J. I., & Borisy, G. G. (2017). Spatial organization of a model 15-member human gut microbiota established in gnotobiotic mice. Proc Natl Acad Sci U S A, 114(43), E9105-E9114. doi: 10.1073/pnas.1711596114

Nunez, I., Rodriguez Pino, M., Wiley, D. J., Das, M. E., Chen, C., Goshima, T., Kume, K., Hirata, D., Toda, T., & Verde, F. (2016). Spatial control of translation repression and polarized growth by conserved NDR kinase Orb6 and RNA-binding protein Sts5. Elife, 5. doi: 10.7554/eLife.14216

Peirson, B. R. E., Bottino, E., Damerow, J. L., & Laubichler, M. D. (2017). Quantitative Perspectives on Fifty Years of the Journal of the History of Biology. J Hist Biol. doi: 10.1007/s10739-017-9499-2

Perez, T., Rodriguez, F., Fernandez, M., Albornoz, J., & Dominguez, A. (2017). Ancient mitochondrial pseudogenes reveal hybridization between distant lineages in the evolution of the Rupicapra genus. Gene, 628, 63-71. doi: 10.1016/j.gene.2017.07.035

Swaminathan, V., Kalappurakkal, J. M., Mehta, S. B., Nordenfelt, P., Moore, T. I., Koga, N., Baker, D. A., Oldenbourg, R., Tani, T., Mayor, S., Springer, T. A., & Waterman, C. M. (2017). Actin retrograde flow actively aligns and orients ligand-engaged integrins in focal adhesions. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 114(40), 10648-10653. doi: 10.1073/pnas.1701136114

Walton, P. L., Christensen-Dalsgaard, J., & Carr, C. E. (2017). Evolution of Sound Source Localization Circuits in the Nonmammalian Vertebrate Brainstem. Brain Behavior and Evolution, 90(2), 131-153. doi: 10.1159/000476028

He, H., Cheng, X., Li, X., Zhu, R., Hui, F., Wu, W., Zhao, T., Kang, J., & Tang, J. (2017). Aerial photography based census of Adélie Penguin and its application in CH4 and N2O budget estimation in Victoria Land, Antarctic. Sci Rep, 7(1), 12942. doi: 10.1038/s41598-017-13380-6

Perez, T., Rodriguez, F., Fernandez, M., Albornoz, J., & Dominguez, A. (2017). Ancient mitochondrial pseudogenes reveal hybridization between distant lineages in the evolution of the Rupicapra genus. Gene, 628, 63-71. doi: 10.1016/j.gene.2017.07.035

Pikul, J. H., Li, S., Bai, H., Hanlon, R. T., Cohen, I., & Shepherd, R. F. (2017). Stretchable surfaces with programmable 3D texture morphing for synthetic camouflaging skins. SCIENCE, 358(6360), 210-214.doi: 10.1126/science.aan5627

Tcherkez, G., Gauthier, P., Buckley, T. N., Busch, F. A., Barbour, M. M., Bruhn, D., Heskel, M. A., Gong, X. Y., Crous, K. Y., Griffin, K., Way, D., Turnbull, M., Adams, M. A., Atkin, O. K., Farquhar, G. D., & Cornic, G. (2017). Leaf day respiration: low CO2 flux but high significance for metabolism and carbon balance. New Phytol. doi: 10.1111/nph.14816

Tkacz, R., Abedin, M. J., Sheath, P., Mehta, S. B., Verma, A., Oldenbourg, R., & Majumder, M. (2017). Phase Transition and Liquid Crystalline Organization of Colloidal Graphene Oxide as a Function of pH. PARTICLE & PARTICLE SYSTEMS CHARACTERIZATION, 34(9). doi: 10.1002/ppsc.201600391

Iversen, M. M., & Rabbitt, R. D. (2017). Wave Mechanics of the Vestibular Semicircular Canals. Biophysical Journal, 113(5), 1133-1149. doi: 10.1016/j.bpj.2017.08.001

Keikhosravi, A., Liu, Y., Drifka, C., Woo, K. M., Verma, A., Oldenbourg, R., & Eliceiri, K. W. (2017). Quantification of collagen organization in histopathology samples using liquid crystal based polarization microscopy. BIOMEDICAL OPTICS EXPRESS, 8(9), 4243-4256. doi: 10.1364/BOE.8.004243

Kroeger, K. D., Crooks, S., Moseman-Valtierra, S., & Tang, J. (2017). Restoring tides to reduce methane emissions in impounded wetlands: A new and potent Blue Carbon climate change intervention. Sci Rep, 7(1), 11914. doi: 10.1038/s41598-017-12138-4

Miyazaki, K., & Ross, W. N. (2017). Sodium dynamics in pyramidal neuron dendritic spines: synaptically evoked entry predominantly through AMPA receptors and removal by diffusion. J Neurosci. doi: 10.1523/JNEUROSCI.1758-17.2017

Neill, C., Jankowski, K., Brando, P. M., Coe, M. T., Deegan, L. A., Macedo, M. N., Riskin, S. H., Porder, S., Elsenbeer, H., & Krusche, A. V. (2017). Surprisingly Modest Water Quality Impacts From Expansion and Intensification of Large-Sscale Commercial Agriculture in the Brazilian Amazon-Cerrado Region. TROPICAL CONSERVATION SCIENCE, 10. doi: 10.1177/1940082917720669

Quince, C., Delmont, T. O., Raguideau, S., Alneberg, J., Darling, A. E., Collins, G., & Eren, A. M. (2017). DESMAN: a new tool for de novo extraction of strains from metagenomes. Genome Biol, 18(1), 181. doi: 10.1186/s13059-017-1309-9

Schlundt, C., Tegtmeier, S., Lennartz, S. T., Bracher, A., Wee, C. B., Kruger, K., Quack, B., & Marandino, C. A. (2017). Oxygenated volatile organic carbon in the western Pacific convective center: ocean cycling, air-sea gas exchange and atmospheric transport. Atmospheric Chemistry and Physics, 17(17), 10837-10854. doi: 10.5194/acp-17-10837-2017

Chen, X., Zeng, G., Xie, Q., Chen, Y., Huang, Y., Qiu, J., Cai, J., Chen, C., & Tang, J. (2017). A novel combined recirculating treatment system for intensive marine aquaculture. AQUACULTURE RESEARCH, 48(9), 5062-5071. doi: 10.1111/are.13323

Euskirchen, E. S., Bret-Harte, M. S., Shaver, G. R., Edgar, C. W., & Romanovsky, V. E. (2017). Long-Term Release of Carbon Dioxide from Arctic Tundra Ecosystems in Alaska. ECOSYSTEMS, 20(5), 960-974. doi: 10.1007/s10021-016-0085-9

Fan, K., Cardona, C., Li, Y., Shi, Y., Xiang, X., Shen, C., Wang, H., Gilbert, J. A., & Chu, H. (2017). Rhizosphere-associated bacterial network structure and spatial distribution differ significantly from bulk soil in wheat crop fields. SOIL BIOLOGY & BIOCHEMISTRY, 113, 275-284. doi: 10.1016/j.soilbio.2017.06.020

Hobbie, E. A., Shamhart, J., Sheriff, M., Ouimette, A. P., Trappe, M., Schuur, E. A. G., Hobbie, J. E., Boonstra, R., & Barnes, B. M. (2017). Stable isotopes and radiocarbon assess variable importance of plants and fungi in diets of arctic ground squirrels. ARCTIC ANTARCTIC AND ALPINE RESEARCH, 49(3), 487-500. doi: 10.1657/AAAR0016-062

Iversen, M. M., & Rabbitt, R. D. (2017). Wave Mechanics of the Vestibular Semicircular Canals. Biophys J, 113(5), 1133-1149. doi: 10.1016/j.bpj.2017.08.001

Toledo-Hernández, C., Ruiz-Diaz, C. P., Díaz-Vázquez, L. M., Santiago-Cárdenas, V., Rosario-Berrios, D. N., García-Almedina, D. M., & Roberson, L. M. (2017). Comparison of chemical compounds associated with sclerites from healthy and diseased sea fan corals (Gorgonia ventalina). PeerJ, 5, e3677. doi: 10.7717/peerj.3677

Brady, S. T., & Morfini, G. A. (2017). Regulation of motor proteins, axonal transport deficits and adult-onset neurodegenerative diseases. NEUROBIOLOGY OF DISEASE, 105, 273-282. doi: 10.1016/j.nbd.2017.04.010

Daniels, W. C., Russell, J. M., Giblin, A. E., Welker, J. M., Klein, E. S., & Huang, Y. (2017). Hydrogen isotope fractionation in leaf waxes in the Alaskan Arctic tundra. GEOCHIMICA ET COSMOCHIMICA ACTA, 213, 216-236. doi: 10.1016/j.gca.2017.06.028

Govind, A. P., Vallejo, Y. F., Stolz, J. R., Yen, J. Z., Swanson, G. T., & Green, W. N. (2017). Selective and regulated trapping of nicotinic receptor weak base ligands and relevance to smoking cessation. Elife, 6(ARTN e25651). doi: 10.7554/eLife.25651

Imai, R., Nozaki, T., Tani, T., Kaizu, K., Hibino, K., Ide, S., Tamura, S., Takahashi, K., Shribak, M., & Maeshima, K. (2017). Density imaging of heterochromatin in live cells using orientation-independent-DIC microscopy. Mol Biol Cell. doi: 10.1091/mbc.E17-06-0359

Mackey, K. R. M., Hunter-Cevera, K., Britten, G. L., Murphy, L. G., Sogin, M. L., & Huber, J. A. (2017). Seasonal Succession and Spatial Patterns of Synechococcus Microdiversity in a Salt Marsh Estuary Revealed through 16S rRNA Gene Oligotyping. FRONTIERS IN MICROBIOLOGY, 8(ARTN 1496). doi: 10.3389/fmicb.2017.01496

Maiato, H., & Ferrás, C. (2017). Actin divides to conquer. SCIENCE, 357(6353), 756. doi: 10.1126/science.aao2461

Mayes, M., Mustard, J., Melillo, J., Neill, C., & Nyadzi, G. (2017). Going beyond the green: senesced vegetation material predicts basal area and biomass in remote sensing of tree cover conditions in an African tropical dry forest (miombo woodland) landscape. ENVIRONMENTAL RESEARCH LETTERS, 12(8). doi: 10.1088/1748-9326/aa7242

Wheeler, M. M. T., Neill, C., Groffman, P. M., Avolio, M., Bettez, N., Cavender-Bares, J., Chowdhury, R. R., Darling, L., Grove, J. M., Hall, S. J., Heffernan, J. B., Hobbie, S. E., Larson, K. L., Morse, J. L., Nelson, K. C., Ogden, L. A., O’Neil-Dunne, J., Pataki, D. E., Polsky, C., Steele, M., & Trammell, T. L. E. (2017). Continental-scale homogenization of residential lawn plant communities. LANDSCAPE AND URBAN PLANNING, 165, 54-63. doi: 10.1016/j.landurbplan.2017.05.004

Bowers, R. M., Kyrpides, N. C., Stepanauskas, R., Harmon-Smith, M., Doud, D., Reddy, T. B. K., Schulz, F., Jarett, J., Rivers, A. R., Eloe-Fadrosh, E. A., Tringe, S. G., Ivanova, N. N., Copeland, A., Clum, A., Becraft, E. D., Malmstrom, R. R., Birren, B., Podar, M., Bork, P., Weinstock, G. M., Garrity, G. M., Dodsworth, J. A., Yooseph, S., Sutton, G., Glöckner, F. O., Gilbert, J. A., Nelson, W. C., Hallam, S. J., Jungbluth, S. P., Ettema, T. J. G., Tighe, S., Konstantinidis, K. T., Liu, W. T., Baker, B. J., Rattei, T., Eisen, J. A., Hedlund, B., McMahon, K. D., Fierer, N., Knight, R., Finn, R., Cochrane, G., Karsch-Mizrachi, I., Tyson, G. W., Rinke, C., Genome Standards, C., Lapidus, A., Meyer, F., Yilmaz, P., Parks, D. H., Eren, A. M., Schriml, L., Banfield, J. F., Hugenholtz, P., & Woyke, T. (2017). Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nat Biotechnol, 35(8), 725-731. doi: 10.1038/nbt.3893

Figueiredo, A. C., & Maiato, H. (2017). Kinetochore regulation: Let there be light. Nat Chem Biol, advance online publication, 1-2. doi: 10.1038/nchembio.2464

Carey, J. C., Parker, T. C., Fetcher, N., & Tang, J. (2017). Biogenic silica accumulation varies across tussock tundra plant functional type. FUNCTIONAL ECOLOGY. doi: 10.1111/1365-2435.12912

Nozaki, T., Imai, R., Tanbo, M., Nagashima, R., Tamura, S., Tani, T., Joti, Y., Tomita, M., Hibino, K., Kanemaki, M. T., Wendt, K. S., Okada, Y., Nagai, T., & Maeshima, K. (2017). Dynamic Organization of Chromatin Domains Revealed by Super-Resolution Live-Cell Imaging. Mol Cell. doi: 10.1016/j.molcel.2017.06.018

Iversen, M. M., Christensen, D. A., Parker, D. L., Holman, H. A., Chen, J., Frerck, M. J., & Rabbitt, R. D. (2017). Low-intensity ultrasound activates vestibular otolith organs through acoustic radiation force. The Journal of the Acoustical Society of America, 141(6), 4209-4219. doi: 10.1121/1.4984287

Lu, X., Zhou, Y., Liu, Y., & Yannick, L. P. (2017). The role of protected areas in land use/land cover change and the carbon cycle in the conterminous United States. Glob Chang Biol. doi: 10.1111/gcb.13816

Mohr, R. A., Whitchurch, E. A., Anderson, R. D., Forlano, P. M., Fay, R. R., Ketten, D. R., Cox, T. C., & Sisneros, J. A. (2017). Intra- and Intersexual swim bladder dimorphisms in the plainfin midshipman fish (Porichthys notatus): Implications of swim bladder proximity to the inner ear for sound pressure detection. J Morphol. doi: 10.1002/jmor.20724

Nguyen, D. M. T., Roper, M., Mircic, S., Olberg, R. M., & Gage, G. J. (2017). Grasshopper DCMD: An Undergraduate Electrophysiology Lab for Investigating Single-Unit Responses to Behaviorally-Relevant Stimuli. J Undergrad Neurosci Educ, 15(2), A162-A173.

Arkhipova, I. R., Yushenova, I. A., & Rodriguez, F. (2017). Giant reverse transcriptase-encoding transposable elements at telomeres. Mol Biol Evol. doi: 10.1093/molbev/msx159

Richter, N., Dillon, J. T., Rott, D. M., Lomazzo, M. A., Seto, C. T., & Huang, Y. S. (2017). Optimizing the yield of transient mono-dimethyl disulfide adducts for elucidating double bond positions of long chain alkenones. Organic Geochemistry, 109, 58-66. doi: 10.1016/j.orggeochem.2017.02.003

Russo, T. A., Tully, K., Palm, C., & Neill, C. (2017). Leaching losses from Kenyan maize cropland receiving different rates of nitrogen fertilizer. NUTRIENT CYCLING IN AGROECOSYSTEMS, 108(2), 195-209. doi: 10.1007/s10705-017-9852-z

Thomason, R. T., Pettiglio, M. A., Herrera, C., Kao, C., Gitlin, J. D., & Bartnikas, T. B. (2017). Characterization of trace metal content in the developing zebrafish embryo. PLOS ONE, 12(6), e0179318. doi: 10.1371/journal.pone.0179318

Doherty, M., Yager, P. L., Moran, M. A., Coles, V. J., Fortunato, C. S., Krusche, A. V., Medeiros, P. M., Payet, J. P., Richey, J. E., Satinsky, B. M., Sawakuchi, H. O., Ward, N. D., & Crump, B. C. (2017). Bacterial Biogeography across the Amazon River-Ocean Continuum. Front Microbiol, 8, 882. doi: 10.3389/fmicb.2017.00882

Kelu, J. J., Webb, S. E., Parrington, J., Galione, A., & Miller, A. L. (2017). Ca2+ release via two-pore channel type 2 (TPC2) is required for slow muscle cell myofibrillogenesis and myotomal patterning in intact zebrafish embryos. Developmental Biology, 425(2), 109-129. doi: 10.1016/j.ydbio.2017.03.031

Iverson, E. A., Goodman, D. A., Gorchels, M. E., & Stedman, K. M. (2017). Extreme Mutation Tolerance: Nearly Half of the Archaeal Fusellovirus Sulfolobus Spindle-Shaped Virus 1 Genes Are Not Required for Virus Function, Including the Minor Capsid Protein Gene vp3. Journal of Virology, 91(10). doi: 10.1128/JVI.02406-16

Jain, A., & Vale, R. D. (2017). RNA phase transitions in repeat expansion disorders. NATURE. doi: 10.1038/nature22386

Kumar, R., Verma, H., Haider, S., Bajaj, A., Sood, U., Ponnusamy, K., Nagar, S., Shakarad, M. N., Negi, R. K., Singh, Y., Khurana, J. P., Gilbert, J. A., & Lal, R. (2017). Comparative Genomic Analysis Reveals Habitat-Specific Genes and Regulatory Hubs within the Genus Novosphingobium. mSystems, 2(3). doi: 10.1128/mSystems.00020-17