Recent Scientific Publications
As of March 18, 2024
Buresch, K. C., Huget, N. D., Brister, W. C., Zhou, E. Y., Lineaweaver, A. S., Rifai, C., Hu, J., Stevenson, Z. E., Boal, J. G., & Hanlon, R. T. (2024). Evidence for tactile 3D shape discrimination by octopus. Journal of Comparative Physiology A. https://doi.org/10.1007/s00359-024-01696-4
Jarriel, S., Formel, N., Ferguson, S., Jensen, F., Apprill, A., & Mooney, T. (2024). Unidentified fish sounds as indicators of coral reef health and comparison to other acoustic methods. Frontiers in Remote Sensing, 5, 1338586. https://doi.org/10.3389/frsen.2024.1338586
McNellis, R., van Gestel, N., Thomas, R. Q., & Smith, N. G. (2024). Winter cover cropping increases albedo and latent heat flux in a Texas High Plains agroecosystem. Ecosphere, 15(2), e4753. https://doi.org/10.1002/ecs2.4753
Fogarty, E. C., Schechter, M. S., Lolans, K., Sheahan, M. L., Veseli, I., Moore, R. M., Kiefl, E., Moody, T., Rice, P. A., Yu, M. K., Mimee, M., Chang, E. B., Ruscheweyh, H.-J., Sunagawa, S., Mclellan, S. L., Willis, A. D., Comstock, L. E., & Eren, A. M. (2024). A cryptic plasmid is among the most numerous genetic elements in the human gut. Cell, 187(5), 1206-1222.e16. https://doi.org/10.1016/j.cell.2024.01.039
McMaken, C. M., & Gribble, K. E. (2024). A free and user-friendly software protocol for the quantification of microfauna swimming behavior. BioTechniques. https://doi.org/10.2144/btn-2024-0001
Yu, M., Fogarty, E., & Eren, A. M. (2024). Diverse plasmid systems and their ecology across human gut metagenomes revealed by PlasX and MobMess. Nature Microbiology, 9(3), 830–847. https://doi.org/10.1038/s41564-024-01610-3
Fricke, A., Bast, F., Moreira-Saporiti, A., Martins Bussanello, G., Msuya, F. E., & Teichberg, M. (2024). Tropical bloom-forming mesoalgae Cladophoropsis sp. And Laurencia sp.—responses to ammonium enrichment and a simulated heatwave. Journal of Phycology. https://doi.org/10.1111/jpy.13435
Henderson, L. C., Wittmers, F., Carlson, C. A., Worden, A. Z., & Close, H. G. (2024). Variable carbon isotope fractionation of photosynthetic communities over depth in an open-ocean euphotic zone. Proceedings of the National Academy of Sciences of the United States of America, 121(10), e2304613121. https://doi.org/10.1073/pnas.2304613121
Hill, A., Schäfer, K., Forbrich, I., & Vargas, R. (2024). Empirical Dynamic Modeling Reveals Complexity of Methane Fluxes in a Temperate Salt Marsh. Journal of Geophysical Research Biogeosciences, 129(2), e2023JG007630. https://doi.org/10.1029/2023jg007630
Bao, Y., Marin, Z., Zhang, C., Neugebauer, K., Baddeley, D., Shribak, M., & Bewersdorf, J. (2024). A correlative quantitative phase contrast and fluorescence super-resolution microscope for imaging molecules in their cellular context. Biophysical Journal, 123(3), 290a.https://doi.org/10.1016/j.bpj.2023.11.1808
MacCord, K. (2024, February). Sex Cells. Natural History, 132(2), 30–35.
Nakamura, M., Kyoda, T., Yoshida, H., Takebayashi-Suzuki, K., Koike, R., Takahashi, E., Moriyama, Y., Wlizla, M., Horb, M. E., & Suzuki, A. (2024). Injury-induced cooperation of InhibinβA and JunB is essential for cell proliferation in Xenopus tadpole tail regeneration. Scientific Reports, 14, 3679.https://doi.org/10.1038/s41598-024-54280-w
Perillo, M., Sepe, R. M., Paganos, P., Toscano, A., & Annunziata, R. (2024). Sea cucumbers: An emerging system in evo-devo. EvoDevo, 15(1), 3.https://doi.org/10.1186/s13227-023-00220-0
Doré, H., Eisenberg, A., Junkins, E., Leventhal, G., Ganesh, A., Cordero, O., Paul, B., Valentine, D., O’Malley, M., & Wilbanks, E. (2024). Targeted hypermutation of putative antigen sensors in multicellular bacteria. Proceedings of the National Academy of Sciences of the United States of America, 121(9), e2316469121. https://doi.org/10.1073/pnas.2316469121
Kwiatkowski, E. R., Rosenthal, J. J. C., & Emery, P. (2024). Clocks at sea: The genome-editing tide is rising. Trends in Genetics. https://doi.org/10.1016/j.tig.2024.01.006
Yin, C., Morita, T., & Parrish, J. Z. (2024). A cell atlas of the larval Aedes aegypti ventral nerve cord. Neural Development, 19(1), 2. https://doi.org/10.1186/s13064-023-00178-8 *Authors from Neurobiology course*
Gordeev, V., Pokrovsky, O., Zhulidov, A., Filippov, A., Gurtovaya, T., Holmes, R., Kosmenko, L., McClelland, J., Peterson, B., & Tank, S. (2024). Dissolved Major and Trace Elements in the Largest Eurasian Arctic Rivers: Ob, Yenisey, Lena, and Kolyma. Water, 16(2), 316. https://doi.org/10.3390/w16020316
Mensinger, A. (2024). So many toadfish, so little time. Journal of the Acoustical Society of America, 155(2), 817–825. https://doi.org/10.1121/10.0024612
Costello, J. H., Colin, S. P., Gemmell, B. J., Dabiri, J. O., & Kanso, E. A. (2024). Turning kinematics of the scyphomedusa Aurelia aurita. Bioinspiration & Biomimetics, 19(2), 026005. https://doi.org/10.1088/1748-3190/ad1db8
Vineis, J. H., Reznikoff, W. S., Antonopoulos, D. A., Koval, J., Chang, E., Fallon, B. R., Paul, B. G., Morrison, H. G., & Sogin, M. L. (2024). A novel conjugative transposon carrying an autonomously amplified plasmid. mBio, e02787-23. https://doi.org/10.1128/mbio.02787-23
Valiela, I., Lloret, J., Chenoweth, K., & Wang, Y. (2024). An example of accelerated changes in current and future ecosystem trajectories: Unexpected rapid transitions in salt marsh vegetation forced by sea level rise. Environmental Challenges, 100842. https://doi.org/10.1016/j.envc.2024.100842
You, Y., Tian, H., Pan, S., Shi, H., Lu, C., Batchelor, W., Cheng, B., Hui, D., Kicklighter, D., Liang, X., Li, X., Melillo, J., Pan, N., Prior, S., & Reilly, J. (2024). Net greenhouse gas balance in U.S. croplands: How can soils be part of the climate solution? Global Change Biology, 30(1), e17109. https://doi.org/10.1111/gcb.17109
Mullowney, M. W., Fiebig, A., Schnizlein, M. K., McMillin, M., Rose, A. R., Koval, J., Rubin, D., Dalal, S., Sogin, M. L., Chang, E. B., Sidebottom, A. M., & Crosson, S. (2024). Microbially catalyzed conjugation of GABA and tyramine to bile acids. Journal of Bacteriology, e00426-23. https://doi.org/10.1128/jb.00426-23
Bulseco, A. N., Murphy, A. E., Giblin, A. E., Tucker, J., Sanderman, J., & Bowen, J. L. (2023). Marsh sediments chronically exposed to nitrogen enrichment contain degraded organic matter that is less vulnerable to decomposition via nitrate reduction. Science of The Total Environment, 169681. https://doi.org/10.1016/j.scitotenv.2023.169681
Hoffmann, C., & Milovanovic, D. (2023). Dipping contacts – a novel type of contact site at the interface between membraneless organelles and membranes. Journal of Cell Science, 136(24), jcs261413. https://doi.org/10.1242/jcs.261413
Maienschein, J. (2023). Everett Mendelsohn at the MBL. Journal of the History of Biology. https://doi.org/10.1007/s10739-023-09754-4
Mark Welch, D., Gould, T., Olins, A., & Olins, D. (2023). The transcriptome of acute dehydration in myeloid leukemic cells. Postepy Biochemii. https://doi.org/10.18388/pb.2021_507
Trouche, B., Schauberger, C., Bouderka, F., Auguet, J.-C., Belser, C., Poulain, J., Thamdrup, B., Wincker, P., Arnaud-Haond, S., Glud, R. N., & Maignien, L. (2023). Distribution and genomic variation of ammonia-oxidizing archaea in abyssal and hadal surface sediments. ISME Communications, 3(1), Article 1. https://doi.org/10.1038/s43705-023-00341-6
Richardson, J., Desai, A., Thom, J., Lindgren, K., Laudon, H., Peichl, M., Nilsson, M., Campeau, A., Järveoja, J., Hawman, P., Mishra, D., Smith, D., D’Acunha, B., Knox, S., Ng, D., Johnson, M., Blackstock, J., Malone, S., Oberbauer, S., Detto, M., Wickland, K. P., Forbrich, I., Weston, N., Hung, J. K. Y., Edgar, C., Euskirchen, E. S., Bret-Harte, S., Dobkowski, J., Kling, G., Kane, E. S., Badiou, P., Bogard, M., Bohrer, G., O’Halloran, T., Ritson, J., Arias-Ortiz, A., Baldocchi, D., Oikawa, P., Shahan, J., & Matsumura, M. (2024). On the Relationship Between Aquatic CO2 Concentration and Ecosystem Fluxes in Some of the World’s Key Wetland Types. Wetlands, 44, 1. https://doi.org/10.1007/s13157-023-01751-x
Arkhipova, I., & Yushenova, I. (2023). To Be Mobile or Not: The Variety of Reverse Transcriptases and Their Recruitment by Host Genomes. Biochemistry (Moscow), 88(11), 1754–1762. https://doi.org/10.1134/s000629792311007x
Bachar-Wikstrom, E., Dhillon, B., Gill Dhillon, N., Abbo, L., Lindén, S. K., & Wikstrom, J. D. (2023). Mass Spectrometry Analysis of Shark Skin Proteins. International Journal of Molecular Sciences, 24(23), Article 23. https://doi.org/10.3390/ijms242316954
Fiebig, A., Schnizlein, M. K., Pena-Rivera, S., Trigodet, F., Dubey, A. A., Hennessy, M. K., Basu, A., Pott, S., Dalal, S., Rubin, D., Sogin, M. L., Eren, A. M., Chang, E. B., & Crosson, S. (2023). Bile acid fitness determinants of a Bacteroides fragilis isolate from a human pouchitis patient. mBio, e02830-23. https://doi.org/10.1128/mbio.02830-23
Ahkami, A. H., Qafoku, O., Roose, T., Mou, Q., Lu, Y., Cardon, Z. G., Wu, Y., Chou, C., Fisher, J. B., Varga, T., Handakumbura, P., Aufrecht, J. A., Bhattacharjee, A., & Moran, J. J. (2024). Emerging sensing, imaging, and computational technologies to scale nano-to macroscale rhizosphere dynamics – Review and research perspectives. Soil Biology and Biochemistry, 189, 109253. https://doi.org/10.1016/j.soilbio.2023.109253
Fisher, G., Roman-Vendrell, C., Brady, E., & Morgan, J. (2023). Ɑ-synuclein alters the morphology of synaptic mitochondria in giant axons of sea lamprey. IBRO Neuroscience Reports, 15, s560. https://doi.org/10.1016/j.ibneur.2023.08.1107
Rees, J. M., Palmer, M. A., & Gillis, J. A. (2023). Fgf signalling is required for gill slit formation in the skate, Leucoraja erinacea. Developmental Biology. https://doi.org/10.1016/j.ydbio.2023.11.008
Arkhipova, I. R., Burns, K. H., Chiappinelli, K. B., Chuong, E. B., Goubert, C., Guarné, A., Larracuente, A. M., Lee, E. A., & Levin, H. L. (2023). Meeting report: Transposable elements at the crossroads of evolution, health and disease 2023. Mobile DNA, 14. https://doi.org/10.1186/s13100-023-00307-4
Jimenez-Guri, E., Murano, C., Paganos, P., & Arnone, M. I. (2023). PVC pellet leachates affect adult immune system and embryonic development but not reproductive capacity in the sea urchin Paracentrotus lividus. Marine Pollution Bulletin. https://doi.org/10.1016/j.marpolbul.2023.115604
Wallace, J. N., Crockford, Z. C., Román-Vendrell, C., Brady, E. B., Hoffmann, C., Vargas, K. J., Potcoava, M., Wegman, M. E., Alford, S. T., Milovanovic, D., & Morgan, J. R. (2023). Excess Phosphoserine-129 α-Synuclein Induces Synaptic Vesicle Trafficking and Declustering Defects at a Vertebrate Synapse. Molecular Biology of the Cell, mbc.E23-07-0269. https://doi.org/10.1091/mbc.E23-07-0269
Beca-Carretero, P., Winters, G., Teichberg, M., Procaccini, G., Schneekloth, F., Zambrano, R. H., Chiquillo, K., & Reuters, H. (2024). Climate change and the presence of invasive species will threaten the persistence of the Mediterranean seagrass community. Science of The Total Environment, 910, 168675. https://doi.org/10.1016/j.scitotenv.2023.168675
Haviland, K. A., Hayn, M., & Howarth, R. W. (2023). Lab-based multispectral photography for approximating chlorophyll content in Zostera marina. Limnology and Oceanography: Methods. https://doi.org/10.1002/lom3.10589
Hehenberger, E., Guo, J., Wilken, S., Hoadley, K., Sudek, L., Poirier, C., Dannebaum, R., Susko, E., & Worden, A. Z. (2023). Phosphate limitation responses in marine green algae are linked to reprogramming of the tRNA epitranscriptome and codon usage bias. Molecular Biology and Evolution, msad251. https://doi.org/10.1093/molbev/msad251
Zheng, J., Mallon, J., Lammers, A., Rados, T., Litschel, T., Moody, E. R. R., Ramirez-Diaz, D. A., Schmid, A., Williams, T. A., Bisson-Filho, A. W., & Garner, E. (2023). Salactin, a dynamically unstable actin homolog in Haloarchaea. mBio, e02272-23. https://doi.org/10.1128/mbio.02272-23 *ARTC*
Thayer, R., & Patel, N. (2023). A meta-analysis of butterfly structural colors: Their color range, distribution and biological production. Journal of Experimental Biology, 226(21). https://doi.org/10.1242/jeb.245940
Wei, H., Xu, X., Savoie, A., Schattle, E., Hardison, A., Erdner, D., & McClelland, J. (2023). Seasonal and nutrient controls on phytoplankton in the Aransas River tidal freshwater zone, Texas, USA. Hydrobiologia. https://doi.org/10.1007/s10750-023-05388-z
Zammit, M., Kao, C.-M., Zhang, H., Tsai, H.-M., Holderman, N., Mitchell, S., Tanios, E., Bhuiyan, M., Freifelder, R., Kucharski, A., Green, W., Mukherjee, J., & Chen, C.-T. (2023). Evaluation of an Image-Derived Input Function for Kinetic Modeling of Nicotinic Acetylcholine Receptor-Binding PET Ligands in Mice. International Journal of Molecular Sciences, 24(21), 15510. https://doi.org/10.3390/ijms242115510
Albertin, C. B., & Katz, P. S. (2023). Evolution of cephalopod nervous systems. Current Biology, 33(20), R1087–R1091. https://doi.org/10.1016/j.cub.2023.08.092
Marino, R., Hayn, M., Howarth, R. W., Giblin, A. E., McGlathery, K. J., & Berg, P. (2023). Nitrogen fixation associated with epiphytes on the seagrass Zostera marina in a temperate lagoon with moderate to high nitrogen loads. Biogeochemistry. https://doi.org/10.1007/s10533-023-01083-2
Pérez Castro, S., Peredo, E., Mason, O., Vineis, J., Bowen, J., Mortazavi, B., Ganesh, A., Ruff, S., Paul, B., Giblin, A., & Cardon, Z. (2023). Diversity at single nucleotide to pangenome scales among sulfur cycling bacteria in salt marshes. Applied and Environmental Microbiology, e0098823. https://doi.org/10.1128/aem.00988-23
Bowen, J. L., Spivak, A. C., Bernhard, A. E., Fulweiler, R. W., & Giblin, A. E. (2023). Salt marsh nitrogen cycling: Where land meets sea. Trends in Microbiology. https://doi.org/10.1016/j.tim.2023.09.010
Chancellor, S., Grasse, B., Sakmar, T., Scheel, D., Brown, J. S., & Santymire, R. M. (2023). Exploring the Effect of Age on the Reproductive and Stress Physiology of Octopus bimaculoides Using Dermal Hormones. Animals, 13(19), 3115. https://doi.org/10.3390/ani13193115