Recent MBL Publications

(as of September 7, 2017)

Chen, X., Zeng, G., Xie, Q., Chen, Y., Huang, Y., Qiu, J., Cai, J., Chen, C., & Tang, J. (2017). A novel combined recirculating treatment system for intensive marine aquaculture. AQUACULTURE RESEARCH, 48(9), 5062-5071. doi: 10.1111/are.13323

Euskirchen, E. S., Bret-Harte, M. S., Shaver, G. R., Edgar, C. W., & Romanovsky, V. E. (2017). Long-Term Release of Carbon Dioxide from Arctic Tundra Ecosystems in Alaska. ECOSYSTEMS, 20(5), 960-974. doi: 10.1007/s10021-016-0085-9

Fan, K., Cardona, C., Li, Y., Shi, Y., Xiang, X., Shen, C., Wang, H., Gilbert, J. A., & Chu, H. (2017). Rhizosphere-associated bacterial network structure and spatial distribution differ significantly from bulk soil in wheat crop fields. SOIL BIOLOGY & BIOCHEMISTRY, 113, 275-284. doi: 10.1016/j.soilbio.2017.06.020

Hobbie, E. A., Shamhart, J., Sheriff, M., Ouimette, A. P., Trappe, M., Schuur, E. A. G., Hobbie, J. E., Boonstra, R., & Barnes, B. M. (2017). Stable isotopes and radiocarbon assess variable importance of plants and fungi in diets of arctic ground squirrels. ARCTIC ANTARCTIC AND ALPINE RESEARCH, 49(3), 487-500. doi: 10.1657/AAAR0016-062

Iversen, M. M., & Rabbitt, R. D. (2017). Wave Mechanics of the Vestibular Semicircular Canals. Biophys J, 113(5), 1133-1149. doi: 10.1016/j.bpj.2017.08.001

Toledo-Hernández, C., Ruiz-Diaz, C. P., Díaz-Vázquez, L. M., Santiago-Cárdenas, V., Rosario-Berrios, D. N., García-Almedina, D. M., & Roberson, L. M. (2017). Comparison of chemical compounds associated with sclerites from healthy and diseased sea fan corals (Gorgonia ventalina). PeerJ, 5, e3677. doi: 10.7717/peerj.3677

Brady, S. T., & Morfini, G. A. (2017). Regulation of motor proteins, axonal transport deficits and adult-onset neurodegenerative diseases. NEUROBIOLOGY OF DISEASE, 105, 273-282. doi: 10.1016/j.nbd.2017.04.010

Daniels, W. C., Russell, J. M., Giblin, A. E., Welker, J. M., Klein, E. S., & Huang, Y. (2017). Hydrogen isotope fractionation in leaf waxes in the Alaskan Arctic tundra. GEOCHIMICA ET COSMOCHIMICA ACTA, 213, 216-236. doi: 10.1016/j.gca.2017.06.028

Govind, A. P., Vallejo, Y. F., Stolz, J. R., Yen, J. Z., Swanson, G. T., & Green, W. N. (2017). Selective and regulated trapping of nicotinic receptor weak base ligands and relevance to smoking cessation. Elife, 6(ARTN e25651). doi: 10.7554/eLife.25651

Imai, R., Nozaki, T., Tani, T., Kaizu, K., Hibino, K., Ide, S., Tamura, S., Takahashi, K., Shribak, M., & Maeshima, K. (2017). Density imaging of heterochromatin in live cells using orientation-independent-DIC microscopy. Mol Biol Cell. doi: 10.1091/mbc.E17-06-0359

Mackey, K. R. M., Hunter-Cevera, K., Britten, G. L., Murphy, L. G., Sogin, M. L., & Huber, J. A. (2017). Seasonal Succession and Spatial Patterns of Synechococcus Microdiversity in a Salt Marsh Estuary Revealed through 16S rRNA Gene Oligotyping. FRONTIERS IN MICROBIOLOGY, 8(ARTN 1496). doi: 10.3389/fmicb.2017.01496

Maiato, H., & Ferrás, C. (2017). Actin divides to conquer. SCIENCE, 357(6353), 756. doi: 10.1126/science.aao2461

Mayes, M., Mustard, J., Melillo, J., Neill, C., & Nyadzi, G. (2017). Going beyond the green: senesced vegetation material predicts basal area and biomass in remote sensing of tree cover conditions in an African tropical dry forest (miombo woodland) landscape. ENVIRONMENTAL RESEARCH LETTERS, 12(8). doi: 10.1088/1748-9326/aa7242

Wheeler, M. M. T., Neill, C., Groffman, P. M., Avolio, M., Bettez, N., Cavender-Bares, J., Chowdhury, R. R., Darling, L., Grove, J. M., Hall, S. J., Heffernan, J. B., Hobbie, S. E., Larson, K. L., Morse, J. L., Nelson, K. C., Ogden, L. A., O’Neil-Dunne, J., Pataki, D. E., Polsky, C., Steele, M., & Trammell, T. L. E. (2017). Continental-scale homogenization of residential lawn plant communities. LANDSCAPE AND URBAN PLANNING, 165, 54-63. doi: 10.1016/j.landurbplan.2017.05.004

Bowers, R. M., Kyrpides, N. C., Stepanauskas, R., Harmon-Smith, M., Doud, D., Reddy, T. B. K., Schulz, F., Jarett, J., Rivers, A. R., Eloe-Fadrosh, E. A., Tringe, S. G., Ivanova, N. N., Copeland, A., Clum, A., Becraft, E. D., Malmstrom, R. R., Birren, B., Podar, M., Bork, P., Weinstock, G. M., Garrity, G. M., Dodsworth, J. A., Yooseph, S., Sutton, G., Glöckner, F. O., Gilbert, J. A., Nelson, W. C., Hallam, S. J., Jungbluth, S. P., Ettema, T. J. G., Tighe, S., Konstantinidis, K. T., Liu, W. T., Baker, B. J., Rattei, T., Eisen, J. A., Hedlund, B., McMahon, K. D., Fierer, N., Knight, R., Finn, R., Cochrane, G., Karsch-Mizrachi, I., Tyson, G. W., Rinke, C., Genome Standards, C., Lapidus, A., Meyer, F., Yilmaz, P., Parks, D. H., Eren, A. M., Schriml, L., Banfield, J. F., Hugenholtz, P., & Woyke, T. (2017). Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nat Biotechnol, 35(8), 725-731. doi: 10.1038/nbt.3893

Figueiredo, A. C., & Maiato, H. (2017). Kinetochore regulation: Let there be light. Nat Chem Biol, advance online publication, 1-2. doi: 10.1038/nchembio.2464

Carey, J. C., Parker, T. C., Fetcher, N., & Tang, J. (2017). Biogenic silica accumulation varies across tussock tundra plant functional type. FUNCTIONAL ECOLOGY. doi: 10.1111/1365-2435.12912

Nozaki, T., Imai, R., Tanbo, M., Nagashima, R., Tamura, S., Tani, T., Joti, Y., Tomita, M., Hibino, K., Kanemaki, M. T., Wendt, K. S., Okada, Y., Nagai, T., & Maeshima, K. (2017). Dynamic Organization of Chromatin Domains Revealed by Super-Resolution Live-Cell Imaging. Mol Cell. doi: 10.1016/j.molcel.2017.06.018

Iversen, M. M., Christensen, D. A., Parker, D. L., Holman, H. A., Chen, J., Frerck, M. J., & Rabbitt, R. D. (2017). Low-intensity ultrasound activates vestibular otolith organs through acoustic radiation force. The Journal of the Acoustical Society of America, 141(6), 4209-4219. doi: 10.1121/1.4984287

Lu, X., Zhou, Y., Liu, Y., & Yannick, L. P. (2017). The role of protected areas in land use/land cover change and the carbon cycle in the conterminous United States. Glob Chang Biol. doi: 10.1111/gcb.13816

Mohr, R. A., Whitchurch, E. A., Anderson, R. D., Forlano, P. M., Fay, R. R., Ketten, D. R., Cox, T. C., & Sisneros, J. A. (2017). Intra- and Intersexual swim bladder dimorphisms in the plainfin midshipman fish (Porichthys notatus): Implications of swim bladder proximity to the inner ear for sound pressure detection. J Morphol. doi: 10.1002/jmor.20724

Nguyen, D. M. T., Roper, M., Mircic, S., Olberg, R. M., & Gage, G. J. (2017). Grasshopper DCMD: An Undergraduate Electrophysiology Lab for Investigating Single-Unit Responses to Behaviorally-Relevant Stimuli. J Undergrad Neurosci Educ, 15(2), A162-A173.

Arkhipova, I. R., Yushenova, I. A., & Rodriguez, F. (2017). Giant reverse transcriptase-encoding transposable elements at telomeres. Mol Biol Evol. doi: 10.1093/molbev/msx159

Richter, N., Dillon, J. T., Rott, D. M., Lomazzo, M. A., Seto, C. T., & Huang, Y. S. (2017). Optimizing the yield of transient mono-dimethyl disulfide adducts for elucidating double bond positions of long chain alkenones. Organic Geochemistry, 109, 58-66. doi: 10.1016/j.orggeochem.2017.02.003

Russo, T. A., Tully, K., Palm, C., & Neill, C. (2017). Leaching losses from Kenyan maize cropland receiving different rates of nitrogen fertilizer. NUTRIENT CYCLING IN AGROECOSYSTEMS, 108(2), 195-209. doi: 10.1007/s10705-017-9852-z

Thomason, R. T., Pettiglio, M. A., Herrera, C., Kao, C., Gitlin, J. D., & Bartnikas, T. B. (2017). Characterization of trace metal content in the developing zebrafish embryo. PLOS ONE, 12(6), e0179318. doi: 10.1371/journal.pone.0179318

Doherty, M., Yager, P. L., Moran, M. A., Coles, V. J., Fortunato, C. S., Krusche, A. V., Medeiros, P. M., Payet, J. P., Richey, J. E., Satinsky, B. M., Sawakuchi, H. O., Ward, N. D., & Crump, B. C. (2017). Bacterial Biogeography across the Amazon River-Ocean Continuum. Front Microbiol, 8, 882. doi: 10.3389/fmicb.2017.00882

Kelu, J. J., Webb, S. E., Parrington, J., Galione, A., & Miller, A. L. (2017). Ca2+ release via two-pore channel type 2 (TPC2) is required for slow muscle cell myofibrillogenesis and myotomal patterning in intact zebrafish embryos. Developmental Biology, 425(2), 109-129. doi: 10.1016/j.ydbio.2017.03.031

Iverson, E. A., Goodman, D. A., Gorchels, M. E., & Stedman, K. M. (2017). Extreme Mutation Tolerance: Nearly Half of the Archaeal Fusellovirus Sulfolobus Spindle-Shaped Virus 1 Genes Are Not Required for Virus Function, Including the Minor Capsid Protein Gene vp3. Journal of Virology, 91(10). doi: 10.1128/JVI.02406-16

Jain, A., & Vale, R. D. (2017). RNA phase transitions in repeat expansion disorders. NATURE. doi: 10.1038/nature22386

Kumar, R., Verma, H., Haider, S., Bajaj, A., Sood, U., Ponnusamy, K., Nagar, S., Shakarad, M. N., Negi, R. K., Singh, Y., Khurana, J. P., Gilbert, J. A., & Lal, R. (2017). Comparative Genomic Analysis Reveals Habitat-Specific Genes and Regulatory Hubs within the Genus Novosphingobium. mSystems, 2(3). doi: 10.1128/mSystems.00020-17

Pold, G., Grandy, A. S., Melillo, J. M., & DeAngelis, K. M. (2017). Changes in substrate availability drive carbon cycle response to chronic warming. SOIL BIOLOGY & BIOCHEMISTRY, 110, 68-78. doi: 10.1016/j.soilbio.2017.03.002

Waite, D. W., Li, D., D’Souza, M., & Gunawardana, D. (2017). Development and validation of a real-time PCR assay for the glassy-winged sharpshooter Homalodisca vitripennis (Hemiptera: Cicadellidae). Bulletin of Entomological Research, 107(3), 332-339. doi: 10.1017/S000748531600095X

De Tender, C., Schlundt, C., Devriese, L. I., Mincer, T. J., Zettler, E. R., & Amaral-Zettler, L. A. (2017). A review of microscopy and comparative molecular-based methods to characterize “Plastisphere” communities. ANALYTICAL METHODS, 9(14), 2132-2143. doi: 10.1039/c7ay00260b

Kearney, W. S., Mariotti, G., Deegan, L. A., & Fagherazzi, S. (2017). Stage-discharge relationship in tidal channels. Limnology and Oceanography-Methods, 15(4), 394-407. doi: 10.1002/lom3.10168

McQuilken, M., Jentzsch, M. S., Verma, A., Mehta, S. B., Oldenbourg, R., & Gladfelter, A. S. (2017). Analysis of Septin Reorganization at Cytokinesis Using Polarized Fluorescence Microscopy. Front Cell Dev Biol, 5, 42. doi: 10.3389/fcell.2017.00042

Ardiel, E. L., Kumar, A., Marbach, J., Christensen, R., Gupta, R., Duncan, W., Daniels, J. S., Stuurman, N., Colón-Ramos, D., & Shroff, H. (2017). Visualizing Calcium Flux in Freely Moving Nematode Embryos. Biophys J, 112(9), 1975-1983. doi: 10.1016/j.bpj.2017.02.035

Arendt, D., Musser, J. M., Baker, C. V., Bergman, A., Cepko, C., Erwin, D. H., Pavlicev, M., Schlosser, G., Widder, S., Laubichler, M. D., & Wagner, G. P. (2016). The origin and evolution of cell types. Nat Rev Genet, 17(12), 744-757. doi: 10.1038/nrg.2016.127

Franco-Obregón, A., & Gilbert, J. A. (2017). The Microbiome-Mitochondrion Connection: Common Ancestries, Common Mechanisms, Common Goals. mSystems, 2(3). doi: 10.1128/mSystems.00018-17

Lu, X. L., Chen, M., Liu, Y. L., Miralles, D. G., & Wang, F. M. (2017). Enhanced water use efficiency in global terrestrial ecosystems under increasing aerosol loadings. AGRICULTURAL AND FOREST METEOROLOGY, 237, 39-49. doi: 10.1016/j.agrformet.2017.02.002

Phillips, C. L., Bond-Lamberty, B., Desai, A. R., Lavoie, M., Risk, D., Tang, J., Todd-Brown, K., & Vargas, R. (2017). The value of soil respiration measurements for interpreting and modeling terrestrial carbon cycling. PLANT AND SOIL, 413(1-2), 1-25. doi: 10.1007/s11104-016-3084-x

Lee, S. T. M., Kahn, S. A., Delmont, T. O., Shaiber, A., Esen, Ö. C., Hubert, N. A., Morrison, H. G., Antonopoulos, D. A., Rubin, D. T., & Eren, A. M. (2017). Tracking microbial colonization in fecal microbiota transplantation experiments via genome-resolved metagenomics. Microbiome, 5(1), 50. doi: 10.1186/s40168-017-0270-x

Corrales-Ugalde, M., Colin, S. P., & Sutherland, K. R. (2017). Nematocyst distribution corresponds to prey capture location in hydromedusae with different predation modes. MARINE ECOLOGY PROGRESS SERIES, 568, 101-110. doi: 10.3354/meps12059

Porath, H. T., Schaffer, A., Kaniewska, P., Alon, S., Eisenberg, E., Rosenthal, J., Levanon, E. Y., & Levy, O. (2017). A-to-I RNA editing in the earliest-diverging eumetazoan phyla. Molecular Biology and Evolution. doi: 10.1093/molbev/msx125

Yang, H., Yang, X., Heskel, M., Sun, S., & Tang, J. (2017). Seasonal variations of leaf and canopy properties tracked by ground-based NDVI imagery in a temperate forest. Sci Rep, 7(1), 1267. doi: 10.1038/s41598-017-01260-y

Akkaynak, D., Siemann, L. A., Barbosa, A., & Mathger, L. M. (2017). Changeable camouflage: how well can flounder resemble the colour and spatial scale of substrates in their natural habitats? ROYAL SOCIETY OPEN SCIENCE, 4(3). doi: 10.1098/rsos.160824

Brady, S. T., & Morfini, G. A. (2017). Regulation of motor proteins, axonal transport deficits and adult-onset neurodegenerative diseases. Neurobiol Dis. doi: 10.1016/j.nbd.2017.04.010

Gibaud, T., Kaplan, C. N., Sharma, P., Zakhary, M. J., Ward, A., Oldenbourg, R., Meyer, R. B., Kamien, R. D., Powers, T. R., & Dogic, Z. (2017). Achiral symmetry breaking and positive Gaussian modulus lead to scalloped colloidal membranes. Proc Natl Acad Sci U S A. doi: 10.1073/pnas.1617043114

Leo, L., Weissmann, C., Burns, M., Kang, M., Song, Y., Qiang, L., Brady, S. T., Baas, P. W., & Morfini, G. (2017). Mutant spastin proteins promote deficits in axonal transport through an isoform-specific mechanism involving casein kinase 2 activation. Hum Mol Genet. doi: 10.1093/hmg/ddx125

Mooney, P., Sulerud, T., Pelletier, J., Dilsaver, M., Tomschik, M., Geisler, C., & Gatlin, J. C. (2017). Tau-based fluorescent protein fusions to visualize microtubules. Cytoskeleton, n/a-n/a. doi: 10.1002/cm.21368

Prager, C. M., Naeem, S., Boelman, N. T., Eitel, J. U. H., Greaves, H. E., Heskel, M. A., Magney, T. S., Menge, D. N. L., Vierling, L. A., & Griffin, K. L. (2017). A gradient of nutrient enrichment reveals nonlinear impacts of fertilization on Arctic plant diversity and ecosystem function. Ecol Evol, 7(7), 2449-2460. doi: 10.1002/ece3.2863

Rodriguez, F., Kenefick, A. W., & Arkhipova, I. R. (2017). LTR-Retrotransposons from Bdelloid Rotifers Capture Additional ORFs Shared between Highly Diverse Retroelement Types. Viruses, 9(4). doi: 10.3390/v9040078

Teif, V. B., Mallm, J. P., Sharma, T., Mark Welch, D. B., Rippe, K., Eils, R., Langowski, J., Olins, A. L., & Olins, D. E. (2017). Nucleosome repositioning during differentiation of a human myeloid leukemia cell line. Nucleus, 8(2), 188-204. doi: 10.1080/19491034.2017.1295201

Erick Peirson, B. R., Kropp, H., Damerow, J., & Laubichler, M. D. (2017). The diversity of experimental organisms in biomedical research may be influenced by biomedical funding. Bioessays. doi: 10.1002/bies.201600258

Gillis, J. A., & Tidswell, O. R. A. (2017). The Origin of Vertebrate Gills. Current Biology, 27(5), 729-732. doi: 10.1016/j.cub.2017.01.022

Kelu, J. J., Webb, S. E., Parrington, J., Galione, A., & Miller, A. L. (2017). Ca2+ release via two-pore channel type 2 (TPC2) is required for slow muscle cell myofibrillogenesis and myotomal patterning in intact zebrafish embryos. Dev Biol. doi: 10.1016/j.ydbio.2017.03.031

Knight, R., Callewaert, C., Marotz, C., Hyde, E. R., Debelius, J. W., McDonald, D., & Sogin, M. L. (2017). The Microbiome and Human Biology. Annu Rev Genomics Hum Genet. doi: 10.1146/annurev-genom-083115-022438

Liscovitch-Brauer, N., Alon, S., Porath, H. T., Elstein, B., Unger, R., Ziv, T., Admon, A., Levanon, E. Y., Rosenthal, J. J. C., & Eisenberg, E. (2017). Trade-off between Transcriptome Plasticity and Genome Evolution in Cephalopods. Cell, 169(2), 191-202.e111. doi: 10.1016/j.cell.2017.03.025

Wan, J., Lin, F., Zhang, W., Xu, A., DeGiorgis, J., Lu, H., & Wan, Y. (2017). Novel approaches to vitiligo treatment via modulation of mTOR and NF-kappa B pathways in human skin melanocytes. INTERNATIONAL JOURNAL OF BIOLOGICAL SCIENCES, 13(3), 391-400. doi: 10.7150/ijbs.17318