Recent MBL Publications

(as of January 17, 2017)

Bowman, J. S., Amaral-Zettler, L. A., J Rich, J., M Luria, C., & Ducklow, H. W. (2017). Bacterial community segmentation facilitates the prediction of ecosystem function along the coast of the western Antarctic Peninsula. ISME J. doi: 10.1038/ismej.2016.204

Neymotin, S. A., Talbot, Z. N., Jung, J. Q., Fenton, A. A., & Lytton, W. W. (2017). Tracking recurrence of correlation structure in neuronal recordings. J Neurosci Methods, 275, 1-9. doi: 10.1016/j.jneumeth.2016.10.009

Zhang, Y., Guanter, L., Berry, J. A., van der Tol, C., Yang, X., Tang, J., & Zhang, F. (2016). Model-based analysis of the relationship between sun-induced chlorophyll fluorescence and gross primary production for remote sensing applications. REMOTE SENSING OF ENVIRONMENT, 187, 145-155. doi: 10.1016/j.rse.2016.10.016

Chen, Z., Xu, Y., Zhou, X., Tang, J., Kuzyakov, Y., Yu, H., Fan, J., & Ding, W. (2017). Extreme rainfall and snowfall alter responses of soil respiration to nitrogen fertilization: a 3-year field experiment. Glob Chang Biol. doi: 10.1111/gcb.13620

Gonzalez-Bellido, P. T., Fabian, S. T., & Nordstrom, K. (2016). Target detection in insects: optical, neural and behavioral optimizations. Current Opinion in Neurobiology, 41, 122-128. doi: 10.1016/j.conb.2016.09.001

Riskin, S. H., Neill, C., Jankowski, K., Krusche, A. V., McHorney, R., Elsenbeer, H., Macedo, M. N., Nunes, D., & Porder, S. (2017). Solute and sediment export from Amazon forest and soybean headwater streams. ECOLOGICAL APPLICATIONS, 27(1), 193-207. doi: 10.1002/eap.1428

Shribak, M., Larkin, K. G., & Biggs, D. (2017). Mapping optical path length and image enhancement using quantitative orientation-independent differential interference contrast microscopy. J Biomed Opt, 22(1), 16006. doi: 10.1117/1.JBO.22.1.016006

Barry, J. F., Turner, M. J., Schloss, J. M., Glenn, D. R., Song, Y., Lukin, M. D., Park, H., & Walsworth, R. L. (2016). Optical magnetic detection of single-neuron action potentials using quantum defects in diamond. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 113(49), 14133-14138. doi: 10.1073/pnas.1601513113

Gibbons, S. M., Scholz, M., Hutchison, A. L., Dinner, A. R., Gilbert, J. A., & Coleman, M. L. (2016). Disturbance Regimes Predictably Alter Diversity in an Ecologically Complex Bacterial System. MBIO, 7(6). doi: 10.1128/mBio.01372-16

Parr, C. S., Schulz, K. S., Hammock, J., Wilson, N., Leary, P., Rice, J., & Corrigan, R. J. (2016). TraitBank: Practical semantics for organism attribute data. Semantic Web, 7(6), 577-588. doi: 10.3233/SW-150190

Schnell, A. K., Hanlon, R. T., Benkada, A., & Jozet-Alves, C. (2016). Lateralization of Eye Use in Cuttlefish: Opposite Direction for Anti-Predatory and Predatory Behaviors. Front Physiol, 7, 620. doi: 10.3389/fphys.2016.00620

Chan, C. M., Aw, J. T. M., Webb, S. E., & Miller, A. L. (2016). SOCE proteins, STIM1 and Orai1, are localized to the cleavage furrow during cytokinesis of the first and second cell division cycles in zebrafish embryos. Zygote, 24(6), 880-889. doi: 10.1017/S0967199416000216

Gemmell, B. J., Fogerson, S. M., Costello, J. H., Morgan, J. R., Dabiri, J. O., & Colin, S. P. (2016). How the bending kinematics of swimming lampreys build negative pressure fields for suction thrust. JOURNAL OF EXPERIMENTAL BIOLOGY, 219(24), 3884-3895. doi: 10.1242/jeb.144642

Jeyifous, O., Lin, E. I., Chen, X., Antinone, S. E., Mastro, R., Drisdel, R., Reese, T. S., & Green, W. N. (2016). Palmitoylation regulates glutamate receptor distributions in postsynaptic densities through control of PSD95 conformation and orientation. Proc Natl Acad Sci U S A. doi: 10.1073/pnas.1612963113

Lokapally, A., Metikala, S., & Hollemann, T. (2016). Xenopus laevis neuronal cell adhesion molecule (nrcam): plasticity of a CAM in the developing nervous system. Dev Genes Evol. doi: 10.1007/s00427-016-0569-9

Schadel, C., Bader, M. K. F., Schuur, E. A. G., Biasi, C., Bracho, R., Capek, P., De Baets, S., Diakova, K., Ernakovich, J., Estop-Aragones, C., Graham, D. E., Hartley, I. P., Iversen, C. M., Kane, E., Knoblauch, C., Lupascu, M., Martikainen, P. J., Natali, S. M., Norby, R. J., O’Donnell, J. A., Chowdhury, T. R., Santruckova, H., Shaver, G., Sloan, V. L., Treat, C. C., Turetsky, M. R., Waldrop, M. P., & Wickland, K. P. (2016). Potential carbon emissions dominated by carbon dioxide from thawed permafrost soils. NATURE CLIMATE CHANGE, 6(10), 950-+. doi: 10.1038/NCLIMATE3054

Yang, H., Yang, X., Zhang, Y., Heskel, M. A., Lu, X., Munger, J. W., Sun, S., & Tang, J. (2016). Chlorophyll fluorescence tracks seasonal variations of photosynthesis from leaf to canopy in a temperate forest. Glob Chang Biol. doi: 10.1111/gcb.13590

Arendt, D., Musser, J. M., Baker, C. V. H., Bergman, A., Cepko, C., Erwin, D. H., Pavlicev, M., Schlosser, G., Widder, S., Laubichler, M. D., & Wagner, G. P. (2016). The origin and evolution of cell types. Nature Reviews Genetics, 17(12), 744-757. doi: 10.1038/nrg.2016.127

Barry, J. F., Turner, M. J., Schloss, J. M., Glenn, D. R., Song, Y., Lukin, M. D., Park, H., & Walsworth, R. L. (2016). Optical magnetic detection of single-neuron action potentials using quantum defects in diamond. Proceedings of the National Academy of Sciences, 113(49), 14133-14138.

Nagy, R. C., Rastetter, E. B., Neill, C., & Porder, S. (2016). Nutrient limitation in tropical secondary forests following different management practices. Ecol Appl. doi: 10.1002/eap.1478

Sutherland, K. R., Gemmell, B. J., Colin, S. P., & Costello, J. H. (2016). Prey capture by the cosmopolitan hydromedusae, Obelia spp., in the viscous regime. LIMNOLOGY AND OCEANOGRAPHY, 61(6), 2309-2317. doi: 10.1002/lno.10390

Wardrip, N. C., Dsouza, M., Urgun-Demirtas, M., Snyder, S. W., Gilbert, J. A., & Arnusch, C. J. (2016). Printing-Assisted Surface Modifications of Patterned Ultrafiltration Membranes. ACS APPLIED MATERIALS & INTERFACES, 8(44), 30271-30280. doi: 10.1021/acsami.6b11331

Crowther, T. W., Todd-Brown, K. E., Rowe, C. W., Wieder, W. R., Carey, J. C., Machmuller, M. B., Snoek, B. L., Fang, S., Zhou, G., Allison, S. D., Blair, J. M., Bridgham, S. D., Burton, A. J., Carrillo, Y., Reich, P. B., Clark, J. S., Classen, A. T., Dijkstra, F. A., Elberling, B., Emmett, B. A., Estiarte, M., Frey, S. D., Guo, J., Harte, J., Jiang, L., Johnson, B. R., Kröel-Dulay, G., Larsen, K. S., Laudon, H., Lavallee, J. M., Luo, Y., Lupascu, M., Ma, L. N., Marhan, S., Michelsen, A., Mohan, J., Niu, S., Pendall, E., Peñuelas, J., Pfeifer-Meister, L., Poll, C., Reinsch, S., Reynolds, L. L., Schmidt, I. K., Sistla, S., Sokol, N. W., Templer, P. H., Treseder, K. K., Welker, J. M., & Bradford, M. A. (2016). Quantifying global soil carbon losses in response to warming. NATURE, 540(7631), 104-108. doi: 10.1038/nature20150

Gladfelter, A. S. (2016). Methods in Cell Biology Septins Volume 136 Preface: ELSEVIER ACADEMIC PRESS INC.

Nagata, R. M., Morandini, A. C., Colin, S. P., Migotto, A. E., & Costello, J. H. (2016). Transitions in morphologies, fluid regimes, and feeding mechanisms during development of the medusa Lychnorhiza lucerna. MARINE ECOLOGY PROGRESS SERIES, 557, 145-159. doi: 10.3354/meps11855

Tamm, S. L. (2016). Novel Structures Associated with Presumed Photoreceptors in the Aboral Sense Organ of Ctenophores. Biological Bulletin, 231(2), 97-102.

Tang, J., Korner, C., Muraoka, H., Piao, S., Shen, M., Thackeray, S. J., & Yang, X. (2016). Emerging opportunities and challenges in phenology: a review. ECOSPHERE, 7(8). doi: 10.1002/ecs2.1436

Berth, S. H., Mesnard-Hoaglin, N., Wang, B., Kim, H., Song, Y., Sapar, M., Morfini, G., & Brady, S. T. (2016). HIV Glycoprotein Gp120 Impairs Fast Axonal Transport by Activating Tak1 Signaling Pathways. ASN Neuro, 8(6). doi: 10.1177/1759091416679073

Braubach, O. R., Tombaz, T., Homma, R., Choi, Y., Bozza, T., & Cohen, L. B. (2016). Physiological and molecular phenotyping of interneurons in the glomerular layer of the mouse olfactory bulb. Chemical Senses, 41(9), E238-E239.

Carey, J. C., Tang, J., Templer, P. H., Kroeger, K. D., Crowther, T. W., Burton, A. J., Dukes, J. S., Emmett, B., Frey, S. D., Heskel, M. A., Jiang, L., Machmuller, M. B., Mohan, J., Panetta, A. M., Reich, P. B., Reinsch, S., Wang, X., Allison, S. D., Bamminger, C., Bridgham, S., Collins, S. L., de Dato, G., Eddy, W. C., Enquist, B. J., Estiarte, M., Harte, J., Henderson, A., Johnson, B. R., Larsen, K. S., Luo, Y., Marhan, S., Melillo, J. M., Peñuelas, J., Pfeifer-Meister, L., Poll, C., Rastetter, E., Reinmann, A. B., Reynolds, L. L., Schmidt, I. K., Shaver, G. R., Strong, A. L., Suseela, V., & Tietema, A. (2016). Temperature response of soil respiration largely unaltered with experimental warming. Proceedings of the National Academy of Sciences. doi: 10.1073/pnas.1605365113

Crosby, S. C., Sax, D. F., Palmer, M. E., Booth, H. S., Deegan, L. A., Bertness, M. D., & Leslie, H. M. (2016). Salt marsh persistence is threatened by predicted sea-level rise. ESTUARINE COASTAL AND SHELF SCIENCE, 181, 93-99. doi: 10.1016/j.ecss.2016.08.018

Gray, J. P., Karandrea, S., Burgos, D. Z., Jaiswal, A. A., & Heart, E. A. (2016). NAD(P)H-dependent quinone oxidoreductase 1 (NQO1) and cytochrome P450 oxidoreductase (CYP450OR) differentially regulate menadione-mediated alterations in redox status, survival and metabolism in pancreatic beta-cells. Toxicology Letters, 262, 1-11. doi: 10.1016/j.toxlet.2016.08.021

Luria, C. M., Amaral-Zettler, L. A., Ducklow, H. W., & Rich, J. J. (2016). Seasonal Succession of Free-Living Bacterial Communities in Coastal Waters of the Western Antarctic Peninsula. Front Microbiol, 7, 1731. doi: 10.3389/fmicb.2016.01731

Vineis, J. H., Ringus, D. L., Morrison, H. G., Delmont, T. O., Dalal, S., Raffals, L. H., Antonopoulos, D. A., Rubin, D. T., Eren, A. M., Chang, E. B., & Sogin, M. L. (2016). Patient-Specific Bacteroides Genome Variants in Pouchitis. MBIO, 7(6). doi: 10.1128/mBio.01713-16

Watson, E. B., Raposa, K. B., Carey, J. C., Wigand, C., & Warren, R. S. Anthropocene Survival of Southern New England’s Salt Marshes. ESTUARIES AND COASTS. doi: 10.1007/s12237-016-0166-1

Arendt, D., Musser, J. M., Baker, C. V., Bergman, A., Cepko, C., Erwin, D. H., Pavlicev, M., Schlosser, G., Widder, S., Laubichler, M. D., & Wagner, G. P. (2016). The origin and evolution of cell types. Nat Rev Genet. doi: 10.1038/nrg.2016.127

Ishihara, K., Korolev, K. S., & Mitchison, T. J. (2016). Physical Basis of Large Microtubule Aster Growth. http://arxiv.org/abs/1610.09985v1

Kuntz, T. M., & Gilbert, J. A. (2016). Introducing the Microbiome into Precision Medicine. Trends Pharmacol Sci. doi: 10.1016/j.tips.2016.10.001

Moriwaki, T., & Goshima, G. (2016). Five factors can reconstitute all three phases of microtubule polymerization dynamics. J Cell Biol.doi: 10.1083/jcb.201604118

Nishi, R., Castañeda, E., Davis, G. W., Fenton, A. A., Hofmann, H. A., King, J., Ryan, T. A., & Trujillo, K. A. (2016). The Global Challenge in Neuroscience Education and Training: The MBL Perspective. Neuron, 92(3), 632-636. doi: 10.1016/j.neuron.2016.10.026

Schnell, A. K., Smith, C. L., Hanlon, R. T., Hall, K. C., & Harcourt, R. (2016). Cuttlefish perform multiple agonistic displays to communicate a hierarchy of threats. BEHAVIORAL ECOLOGY AND SOCIOBIOLOGY, 70(10), 1643-1655. doi: 10.1007/s00265-016-2170-7

Gilbert, J. A. (2016). How do we make indoor environments and healthcare settings healthier? Microb Biotechnol. doi: 10.1111/1751-7915.12430

Gray, J. P., Karandrea, S., Burgos, D. Z., Jaiswal, A. A., & Heart, E. A. (2016). NAD(P)H-dependent quinone oxidoreductase 1 (NQO1) and cytochrome P450 oxidoreductase (CYP450OR) differentially regulate menadione-mediated alterations in redox status, survival and metabolism in pancreatic beta-cells. Toxicol Lett, 262, 1-11. doi: 10.1016/j.toxlet.2016.08.021

Johnson, D. S., Warren, R. S., Deegan, L. A., & Mozdzer, T. J. (2016). Saltmarsh plant responses to eutrophication. Ecol Appl. doi: 10.1002/eap.1402

Neymotin, S. A., Talbot, Z. N., Jung, J. Q., Fenton, A. A., & Lytton, W. W. (2016). Tracking recurrence of correlation structure in neuronal recordings. J Neurosci Methods. doi: 10.1016/j.jneumeth.2016.10.009

Tully, K. L., Hickman, J., McKenna, M., Neil, C., & Palm, C. A. (2016). Effects of fertilizer on inorganic soil N in East Africa maize systems: vertical distributions and temporal dynamics. ECOLOGICAL APPLICATIONS, 26(6), 1907-1919. doi: 10.1890/15-1518.1

Ascoli, M., Mebane, D., & Fazleabas, A. T. (2016). Frontiers in Reproduction (FIR): An Assessment of Success. Biology of Reproduction, 95(1), 27.

Bridges, A. A., & Gladfelter, A. S. (2016). Septin complexes assemble during a kinetic window of opportunity. Cell Cycle, 1-2. doi: 10.1080/15384101.2016.1215700

Hanlon, R. (2016). Q & A. Current Biology, 26(17), R782-R784.

Heskel, M. A., Atkin, O. K., O’Sullivan, O. S., Reich, P., Tjoelker, M. G., Weerasinghe, L. K., Penillard, A., Egerton, J. J. G., Creek, D., Bloomfield, K. J., Xiang, J., Sinca, F., Stangl, Z. R., Martinez-de la Torre, A., Griffin, K. L., Huntingford, C., Hurry, V., Meir, P., & Turnbull, M. H. (2016). Reply to Adams et al.: Empirical versus process-based approaches to modeling temperature responses of leaf respiration. Proceedings of the National Academy of Sciences.

Toledo-Hernandez, C., Patricia Ruiz-Diaz, C., Ramirez-Camejo, L., Paniagua, R., Sabat, A. M., Roberson, L., & Bayman, P. (2016). The role of sclerites in the defense against pathogens of the sea fan Gorgonia ventalina (Octocorallia). JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY, 483, 20-24. doi: 10.1016/j.jembe.2016.06.002

Carey, J. C., & Fulweiler, R. W. (2016). Human appropriation of biogenic silicon – the increasing role of agriculture. FUNCTIONAL ECOLOGY, 30(8), 1331-1339. doi: 10.1111/1365-2435.12544

Chan, H. Y. S., Cheung, M. C., Gao, Y., Miller, A. L., & Webb, S. E. (2016). Expression and reconstitution of the bioluminescent Ca2+ reporter aequorin in human embryonic stem cells, and exploration of the presence of functional IP3 and ryanodine receptors during the early stages of their differentiation into cardiomyocytes. Science China-Life Sciences, 59(8), 811-824. doi: 10.1007/s11427-016-5094-6

Kearns, P. J., Angell, J. H., Howard, E. M., Deegan, L. A., Stanley, R. H., & Bowen, J. L. Nutrient enrichment induces dormancy and decreases diversity of active bacteria in salt marsh sediments. Nat Commun, 7, 12881.
doi: 10.1038/ncomms12881

Ryan, J. F., Schnitzler, C. E., & Tamm, S. L. (2016). Meeting report of Ctenopalooza: the first international meeting of ctenophorologists. Evodevo, 7. doi: 10.1186/s13227-016-0057-3

Wu, Y., Chandris, P., Winter, P. W., Kim, E. Y., Jaumouille, V., Kumar, A., Guo, M., Leung, J. M., Smith, C., Rey-Suarez, I., Liu, H., Waterman, C. M., Ramamurthi, K. S., La Riviere, P. J., & Shroff, H. (2016). Simultaneous multiview capture and fusion improves spatial resolution in wide-field and light-sheet microscopy. OPTICA, 3(8), 897-910. doi: 10.1364/OPTICA.3.000897

Lloret, J., & Valiela, I. (2016). Unprecedented decrease in deposition of nitrogen oxides over North America: the relative effects of emission controls and prevailing air-mass trajectories. BIOGEOCHEMISTRY, 129(1-2), 165-180. doi: 10.1007/s10533-016-0225-5

Fernandez-Gonzalez, N., Huber, J. A., & Vallino, J. J. (2016). Microbial Communities Are Well Adapted to Disturbances in Energy Input. mSystems, 1(5). doi: 10.1128/mSystems.00117-16

Holman, H. A., Tran, V. M., Kalita, M., Nguyen, L. N., Arungundram, S., Kuberan, B., & Rabbitt, R. D. (2016). BODIPY-Conjugated Xyloside Primes Fluorescent Glycosaminoglycans in the Inner Ear of Opsanus tau. J Assoc Res Otolaryngol. doi: 10.1007/s10162-016-0585-5