Recent MBL Publications

(as of March 27, 2017)

Smith, M. W., Herfort, L., Fortunato, C. S., Crump, B. C., & Simon, H. M. (2017). Microbial players and processes involved in phytoplankton bloom utilization in the water column of a fast-flowing, river-dominated estuary. Microbiologyopen. doi: 10.1002/mbo3.467

Taylor, M. J., Husain, K., Gartner, Z. J., Mayor, S., & Vale, R. D. (2017). A DNA-Based T Cell Receptor Reveals a Role for Receptor Clustering in Ligand Discrimination. Cell, 169(1), 108-119.e120. doi: 10.1016/j.cell.2017.03.006

Tcherkez, G., Gauthier, P., Buckley, T. N., Busch, F. A., Barbour, M. M., Bruhn, D., Heskel, M. A., Gong, X. Y., Crous, K., Griffin, K. L., Way, D. A., Turnbull, M. H., Adams, M. A., Atkin, O. K., Bender, M., Farquhar, G. D., & Cornic, G. (2017). Tracking the origins of the Kok effect, 70 years after its discovery. New Phytol, 214(2), 506-510. doi: 10.1111/nph.14527

Bisht, J. S., LeValley, P. J., Noren, B. E., Tomschik, M., Kloxin, A. M., Oakey, J. S., & Gatlin, J. C. (2015). Manipulating cell cycle progression via light-induced release of proteins from photodegradable hydrogels. Molecular Biology of the Cell, 26.

Highfield, A., Joint, I., Gilbert, J. A., Crawfurd, K. J., & Schroeder, D. C. (2017). Change in Emiliania huxleyi Virus Assemblage Diversity but Not in Host Genetic Composition during an Ocean Acidification Mesocosm Experiment. Viruses, 9(3). doi: 10.3390/v9030041

Mizuno, K., & Sloboda, R. D. (2017). Protein Arginine Methyltransferases Interact with IFT Particles and Change Location During Flagellar Growth and Resorption. Mol Biol Cell. doi: 10.1091/mbc.E16-11-0774

Taylor, B. N., Patterson, A. E., Ajayi, M., Arkebauer, R., Bao, K., Bray, N., Elliott, R. M., Gauthier, P. P. G., Gersony, J., Gibson, R., Guerin, M., Lavenhar, S., Leland, C., Lemordant, L., Liao, W., Melillo, J., Oliver, R., Prager, C. M., Schuster, W., Schwartz, N. B., Shen, C., Terlizzi, K. P., & Griffin, K. L. (2017). Growth and physiology of a dominant understory shrub, Hamamelis virginiana, following canopy disturbance in a temperate hardwood forest. CANADIAN JOURNAL OF FOREST RESEARCH, 47(2), 193-202. doi: 10.1139/cjfr-2016-0208

Wardill, T. J., Fabian, S. T., Pettigrew, A. C., Stavenga, D. G., Nordström, K., & Gonzalez-Bellido, P. T. (2017). A Novel Interception Strategy in a Miniature Robber Fly with Extreme Visual Acuity. Curr Biol. doi: 10.1016/j.cub.2017.01.050

Zheng, H., Huang, H., Chen, C., Fu, Z., Xu, H., Tan, S., She, W., Liao, X., & Tang, J. (2017). Traditional symbiotic farming technology in China promotes the sustainability of a flooded rice production system. SUSTAINABILITY SCIENCE, 12(1), 155-161. doi: 10.1007/s11625-016-0399-8

Allard, C., Decker, F., Weiner, O. D., Graziano, B. R., & Toettcher, J. E. (2016). Using optogenetics to uncover principles governing cell size scaling relationships in giant yeast. Molecular Biology of the Cell, 27.

Campbell, K. M., Kouris, A., England, W., Anderson, R. E., McCleskey, R. B., Nordstrom, D. K., & Whitaker, R. J. (2017). Sulfolobus islandicus meta-populations in Yellowstone National Park hot springs. Environmental Microbiology, n/a–n/a. doi: 10.1111/1462-2920.13728

Liu, R. G., Shang, R., Liu, Y., & Lu, X. L. (2017). Global evaluation of gap-filling approaches for seasonal NDVI with considering vegetation growth trajectory, protection of key point, noise resistance and curve stability. REMOTE SENSING OF ENVIRONMENT, 189, 164-179. doi: 10.1016/j.rse.2016.11.023

McLaren, J. R., Buckeridge, K. M., van de Weg, M. J., Shaver, G. R., Schimel, J. P., & Gough, L. (2017). Shrub encroachment in Arctic tundra: Betula nana effects on above- and below-ground litter decomposition. Ecology. doi: 10.1002/ecy.1790

Sama, R. R., Fallini, C., Gatto, R., McKeon, J. E., Song, Y., Rotunno, M. S., Penaranda, S., Abdurakhmanov, I., Landers, J. E., Morfini, G., Brady, S. T., & Bosco, D. A. (2017). ALS-linked FUS exerts a gain of toxic function involving aberrant p38 MAPK activation. Sci Rep, 7(1), 115. doi: 10.1038/s41598-017-00091-1

Savova, V., Pearl, E. J., Boke, E., Nag, A., Adzhubei, I., Horb, M. E., & Peshkin, L. (2017). Transcriptomic Insights into Genetic Diversity of Protein-Coding Genes in X. laevis. Developmental Biology. doi: 10.1016/j.ydbio.2017.02.019

Gribble, K. E., & Mark Welch, D. B. (2017). Genome-wide transcriptomics of aging in the rotifer Brachionus manjavacas, an emerging model system. BMC GENOMICS, 18(1), 217. doi: 10.1186/s12864-017-3540-x

Pearl, E., Morrow, S., Noble, A., Lerebours, A., Horb, M., & Guille, M. (2017). An optimized method for cryogenic storage of Xenopus sperm to maximise the effectiveness of research using genetically altered frogs. Theriogenology, 92, 149-155. doi: 10.1016/j.theriogenology.2017.01.007

Su, X., Ditlev, J. A., Rosen, M. K., & Vale, R. D. (2017). Reconstitution of TCR Signaling Using Supported Lipid Bilayers. Methods Mol Biol, 1584, 65-76. doi: 10.1007/978-1-4939-6881-7_5

Crosby, S. C., Angermeyer, A., Adler, J. M., Bertness, M. D., Deegan, L. A., Sibinga, N., & Leslie, H. M. (2017). Spartina alterniflora Biomass Allocation and Temperature: Implications for Salt Marsh Persistence with Sea-Level Rise. ESTUARIES AND COASTS, 40(1), 213-223. doi: 10.1007/s12237-016-0142-9

Gillis, J. A., & Tidswell, O. R. (2017). The Origin of Vertebrate Gills. Curr Biol. doi: 10.1016/j.cub.2017.01.022

Ma, B., Dai, Z., Wang, H., Dsouza, M., Liu, X., He, Y., Wu, J., Rodrigues, J. L., Gilbert, J. A., Brookes, P. C., & Xu, J. (2017). Distinct Biogeographic Patterns for Archaea, Bacteria, and Fungi along the Vegetation Gradient at the Continental Scale in Eastern China. mSystems, 2(1). doi: 10.1128/mSystems.00174-16

Moseman-Valtierra, S., Abdul-Aziz, O. I., Tang, J., Ishtiaq, K. S., Morkeski, K., Mora, J., Quinn, R. K., Martin, R. M., Egan, K., Brannon, E. Q., Carey, J., & Kroeger, K. D. (2016). Carbon dioxide fluxes reflect plant zonation and belowground biomass in a coastal marsh. ECOSPHERE, 7(11). doi: 10.1002/ecs2.1560

Criswell, K. E., Coates, M. I., & Gillis, J. A. (2017). Embryonic development of the axial column in the little skate, Leucoraja erinacea. J Morphol. doi: 10.1002/jmor.20637

de Keijzer, J., Kieft, H., Ketelaar, T., Goshima, G., & Janson, M. E. (2017). Shortening of Microtubule Overlap Regions Defines Membrane Delivery Sites during Plant Cytokinesis. Curr Biol. doi: 10.1016/j.cub.2016.12.043

Mark Welch, D. B., Jauch, A., Langowski, J., Olins, A. L., & Olins, D. E. (2017). Transcriptomes reflect the Phenotypes of Undifferentiated, Granulocyte and Macrophage forms of HL-60/S4 cells. Nucleus, 0. doi: 10.1080/19491034.2017.1285989

Medina, C. S., Biris, O., Falzone, T. L., Zhang, X. W., Zimmerman, A. J., & Bearer, E. L. (2017). Hippocampal to basal forebrain transport of Mn2+ is impaired by deletion of KLC1, a subunit of the conventional kinesin microtubule-based motor. Neuroimage, 145, 44-57. doi: 10.1016/j.neuroimage.2016.09.035

Amaral-Zettler, L. A., Dragone, N. B., Schell, J., Slikas, B., Murphy, L. G., Morrall, C. E., & Zettler, E. R. (2017). Comparative mitochondrial and chloroplast genomics of a genetically distinct form of Sargassum contributing to recent “Golden Tides” in the Western Atlantic. Ecol Evol, 7(2), 516-525. doi: 10.1002/ece3.2630

Hobbie, J. E., Shaver, G. R., Rastetter, E. B., Cherry, J. E., Goetz, S. J., Guay, K. C., Gould, W. A., & Kling, G. W. (2017). Ecosystem responses to climate change at a Low Arctic and a High Arctic long-term research site. AMBIO, 46(Suppl 1), 160-173. doi: 10.1007/s13280-016-0870-x

Sylvan, J. B., Wankel, S. D., LaRowe, D. E., Charoenpong, C. N., Huber, J. A., Moyer, C. L., & Edwards, K. J. (2017). Evidence for microbial mediation of subseafloor nitrogen redox processes at Loihi Seamount, Hawaii. GEOCHIMICA ET COSMOCHIMICA ACTA, 198, 131-150. doi: 10.1016/j.gca.2016.10.029

Bowman, J. S., Amaral-Zettler, L. A., J Rich, J., M Luria, C., & Ducklow, H. W. (2017). Bacterial community segmentation facilitates the prediction of ecosystem function along the coast of the western Antarctic Peninsula. ISME J. doi: 10.1038/ismej.2016.204

Neymotin, S. A., Talbot, Z. N., Jung, J. Q., Fenton, A. A., & Lytton, W. W. (2017). Tracking recurrence of correlation structure in neuronal recordings. J Neurosci Methods, 275, 1-9. doi: 10.1016/j.jneumeth.2016.10.009

Zhang, Y., Guanter, L., Berry, J. A., van der Tol, C., Yang, X., Tang, J., & Zhang, F. (2016). Model-based analysis of the relationship between sun-induced chlorophyll fluorescence and gross primary production for remote sensing applications. REMOTE SENSING OF ENVIRONMENT, 187, 145-155. doi: 10.1016/j.rse.2016.10.016

Chen, Z., Xu, Y., Zhou, X., Tang, J., Kuzyakov, Y., Yu, H., Fan, J., & Ding, W. (2017). Extreme rainfall and snowfall alter responses of soil respiration to nitrogen fertilization: a 3-year field experiment. Glob Chang Biol. doi: 10.1111/gcb.13620

Gonzalez-Bellido, P. T., Fabian, S. T., & Nordstrom, K. (2016). Target detection in insects: optical, neural and behavioral optimizations. Current Opinion in Neurobiology, 41, 122-128. doi: 10.1016/j.conb.2016.09.001

Riskin, S. H., Neill, C., Jankowski, K., Krusche, A. V., McHorney, R., Elsenbeer, H., Macedo, M. N., Nunes, D., & Porder, S. (2017). Solute and sediment export from Amazon forest and soybean headwater streams. ECOLOGICAL APPLICATIONS, 27(1), 193-207. doi: 10.1002/eap.1428

Shribak, M., Larkin, K. G., & Biggs, D. (2017). Mapping optical path length and image enhancement using quantitative orientation-independent differential interference contrast microscopy. J Biomed Opt, 22(1), 16006. doi: 10.1117/1.JBO.22.1.016006

Barry, J. F., Turner, M. J., Schloss, J. M., Glenn, D. R., Song, Y., Lukin, M. D., Park, H., & Walsworth, R. L. (2016). Optical magnetic detection of single-neuron action potentials using quantum defects in diamond. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 113(49), 14133-14138. doi: 10.1073/pnas.1601513113

Gibbons, S. M., Scholz, M., Hutchison, A. L., Dinner, A. R., Gilbert, J. A., & Coleman, M. L. (2016). Disturbance Regimes Predictably Alter Diversity in an Ecologically Complex Bacterial System. MBIO, 7(6). doi: 10.1128/mBio.01372-16

Parr, C. S., Schulz, K. S., Hammock, J., Wilson, N., Leary, P., Rice, J., & Corrigan, R. J. (2016). TraitBank: Practical semantics for organism attribute data. Semantic Web, 7(6), 577-588. doi: 10.3233/SW-150190

Schnell, A. K., Hanlon, R. T., Benkada, A., & Jozet-Alves, C. (2016). Lateralization of Eye Use in Cuttlefish: Opposite Direction for Anti-Predatory and Predatory Behaviors. Front Physiol, 7, 620. doi: 10.3389/fphys.2016.00620

Chan, C. M., Aw, J. T. M., Webb, S. E., & Miller, A. L. (2016). SOCE proteins, STIM1 and Orai1, are localized to the cleavage furrow during cytokinesis of the first and second cell division cycles in zebrafish embryos. Zygote, 24(6), 880-889. doi: 10.1017/S0967199416000216

Gemmell, B. J., Fogerson, S. M., Costello, J. H., Morgan, J. R., Dabiri, J. O., & Colin, S. P. (2016). How the bending kinematics of swimming lampreys build negative pressure fields for suction thrust. JOURNAL OF EXPERIMENTAL BIOLOGY, 219(24), 3884-3895. doi: 10.1242/jeb.144642

Jeyifous, O., Lin, E. I., Chen, X., Antinone, S. E., Mastro, R., Drisdel, R., Reese, T. S., & Green, W. N. (2016). Palmitoylation regulates glutamate receptor distributions in postsynaptic densities through control of PSD95 conformation and orientation. Proc Natl Acad Sci U S A. doi: 10.1073/pnas.1612963113

Lokapally, A., Metikala, S., & Hollemann, T. (2016). Xenopus laevis neuronal cell adhesion molecule (nrcam): plasticity of a CAM in the developing nervous system. Dev Genes Evol. doi: 10.1007/s00427-016-0569-9

Schadel, C., Bader, M. K. F., Schuur, E. A. G., Biasi, C., Bracho, R., Capek, P., De Baets, S., Diakova, K., Ernakovich, J., Estop-Aragones, C., Graham, D. E., Hartley, I. P., Iversen, C. M., Kane, E., Knoblauch, C., Lupascu, M., Martikainen, P. J., Natali, S. M., Norby, R. J., O’Donnell, J. A., Chowdhury, T. R., Santruckova, H., Shaver, G., Sloan, V. L., Treat, C. C., Turetsky, M. R., Waldrop, M. P., & Wickland, K. P. (2016). Potential carbon emissions dominated by carbon dioxide from thawed permafrost soils. NATURE CLIMATE CHANGE, 6(10), 950-+. doi: 10.1038/NCLIMATE3054

Yang, H., Yang, X., Zhang, Y., Heskel, M. A., Lu, X., Munger, J. W., Sun, S., & Tang, J. (2016). Chlorophyll fluorescence tracks seasonal variations of photosynthesis from leaf to canopy in a temperate forest. Glob Chang Biol. doi: 10.1111/gcb.13590

Arendt, D., Musser, J. M., Baker, C. V. H., Bergman, A., Cepko, C., Erwin, D. H., Pavlicev, M., Schlosser, G., Widder, S., Laubichler, M. D., & Wagner, G. P. (2016). The origin and evolution of cell types. Nature Reviews Genetics, 17(12), 744-757. doi: 10.1038/nrg.2016.127

Barry, J. F., Turner, M. J., Schloss, J. M., Glenn, D. R., Song, Y., Lukin, M. D., Park, H., & Walsworth, R. L. (2016). Optical magnetic detection of single-neuron action potentials using quantum defects in diamond. Proceedings of the National Academy of Sciences, 113(49), 14133-14138.

Nagy, R. C., Rastetter, E. B., Neill, C., & Porder, S. (2016). Nutrient limitation in tropical secondary forests following different management practices. Ecol Appl. doi: 10.1002/eap.1478

Sutherland, K. R., Gemmell, B. J., Colin, S. P., & Costello, J. H. (2016). Prey capture by the cosmopolitan hydromedusae, Obelia spp., in the viscous regime. LIMNOLOGY AND OCEANOGRAPHY, 61(6), 2309-2317. doi: 10.1002/lno.10390

Wardrip, N. C., Dsouza, M., Urgun-Demirtas, M., Snyder, S. W., Gilbert, J. A., & Arnusch, C. J. (2016). Printing-Assisted Surface Modifications of Patterned Ultrafiltration Membranes. ACS APPLIED MATERIALS & INTERFACES, 8(44), 30271-30280. doi: 10.1021/acsami.6b11331

Crowther, T. W., Todd-Brown, K. E., Rowe, C. W., Wieder, W. R., Carey, J. C., Machmuller, M. B., Snoek, B. L., Fang, S., Zhou, G., Allison, S. D., Blair, J. M., Bridgham, S. D., Burton, A. J., Carrillo, Y., Reich, P. B., Clark, J. S., Classen, A. T., Dijkstra, F. A., Elberling, B., Emmett, B. A., Estiarte, M., Frey, S. D., Guo, J., Harte, J., Jiang, L., Johnson, B. R., Kröel-Dulay, G., Larsen, K. S., Laudon, H., Lavallee, J. M., Luo, Y., Lupascu, M., Ma, L. N., Marhan, S., Michelsen, A., Mohan, J., Niu, S., Pendall, E., Peñuelas, J., Pfeifer-Meister, L., Poll, C., Reinsch, S., Reynolds, L. L., Schmidt, I. K., Sistla, S., Sokol, N. W., Templer, P. H., Treseder, K. K., Welker, J. M., & Bradford, M. A. (2016). Quantifying global soil carbon losses in response to warming. NATURE, 540(7631), 104-108. doi: 10.1038/nature20150

Gladfelter, A. S. (2016). Methods in Cell Biology Septins Volume 136 Preface: ELSEVIER ACADEMIC PRESS INC.

Nagata, R. M., Morandini, A. C., Colin, S. P., Migotto, A. E., & Costello, J. H. (2016). Transitions in morphologies, fluid regimes, and feeding mechanisms during development of the medusa Lychnorhiza lucerna. MARINE ECOLOGY PROGRESS SERIES, 557, 145-159. doi: 10.3354/meps11855

Tamm, S. L. (2016). Novel Structures Associated with Presumed Photoreceptors in the Aboral Sense Organ of Ctenophores. Biological Bulletin, 231(2), 97-102.

Tang, J., Korner, C., Muraoka, H., Piao, S., Shen, M., Thackeray, S. J., & Yang, X. (2016). Emerging opportunities and challenges in phenology: a review. ECOSPHERE, 7(8). doi: 10.1002/ecs2.1436

Berth, S. H., Mesnard-Hoaglin, N., Wang, B., Kim, H., Song, Y., Sapar, M., Morfini, G., & Brady, S. T. (2016). HIV Glycoprotein Gp120 Impairs Fast Axonal Transport by Activating Tak1 Signaling Pathways. ASN Neuro, 8(6). doi: 10.1177/1759091416679073

Braubach, O. R., Tombaz, T., Homma, R., Choi, Y., Bozza, T., & Cohen, L. B. (2016). Physiological and molecular phenotyping of interneurons in the glomerular layer of the mouse olfactory bulb. Chemical Senses, 41(9), E238-E239.

Carey, J. C., Tang, J., Templer, P. H., Kroeger, K. D., Crowther, T. W., Burton, A. J., Dukes, J. S., Emmett, B., Frey, S. D., Heskel, M. A., Jiang, L., Machmuller, M. B., Mohan, J., Panetta, A. M., Reich, P. B., Reinsch, S., Wang, X., Allison, S. D., Bamminger, C., Bridgham, S., Collins, S. L., de Dato, G., Eddy, W. C., Enquist, B. J., Estiarte, M., Harte, J., Henderson, A., Johnson, B. R., Larsen, K. S., Luo, Y., Marhan, S., Melillo, J. M., Peñuelas, J., Pfeifer-Meister, L., Poll, C., Rastetter, E., Reinmann, A. B., Reynolds, L. L., Schmidt, I. K., Shaver, G. R., Strong, A. L., Suseela, V., & Tietema, A. (2016). Temperature response of soil respiration largely unaltered with experimental warming. Proceedings of the National Academy of Sciences. doi: 10.1073/pnas.1605365113