Recent Scientific Publications
As of April 29, 2024
Arkhipova, I., & Yushenova, I. (2023). To be mobile or not: The variety of reverse transcriptases and their recruitment by host genomes. Биохимия, 88(11), 2127–2137. https://doi.org/10.31857/s0320972523110088
Maes, S. L., Dietrich, J., Midolo, G., Schwieger, S., Kummu, M., Vandvik, V., Aerts, R., Althuizen, I. H. J., Biasi, C., Björk, R. G., Böhner, H., Carbognani, M., Chiari, G., Christiansen, C. T., Clemmensen, K. E., Cooper, E. J., Cornelissen, J. H. C., Elberling, B., Faubert, P., Fetcher, N., Forte, T. G. W., Gaudard, J., Gavazov, K., Guan, Z., Guomundsson, J., Gya, R., Hallin, S., Hansen, B. B., Haugum, S. V., He, J.-S., Hicks Pries, C., Hovenden, M. J., Jalava, M., Jonsdottir, I. S., Juhanson, J., Jung, J. Y., Kaarlejarvi, E., Kwon, M. J., Lamprecht, R. E., Le Moullec, M., Lee, H., Marushchak, M. E., Michelsen, A., Munir, T. M., Myrsky, E. M., Nielsen, C. S., Nyberg, M., Olofsson, J., Oskarsson, H., Parker, T. C., Pedersen, E. P., Petit Bon, M., Petraglia, A., Raundrup, K., Ravn, N. M. R., Rinnan, R., Rodenhizer, H., Ryde, I., Schmidt, N. M., Schuur, E. A. G., Sjogersten, S., Stark, S., Strack, M., Tang, J., Tolvanen, A., Topper, J. P., Vaisanen, M. K., van Logtestijn, R. S. P., Voigt, C., Walz, J., Weedon, J. T., Yang, Y., Ylanne, H., Bjorkman, M. P., Sarneel, J. M., & Dorrepaal, E. (2024). Environmental drivers of increased ecosystem respiration in a warming tundra. Nature. https://doi.org/10.1038/s41586-024-07274-7
Álvarez-Campos, P., García-Castro, H., Emili, E., Pérez-Posada, A., del Olmo, I., Peron, S., Salamanca-Díaz, D. A., Mason, V., Metzger, B., Bely, A. E., Kenny, N. J., Özpolat, B. D., & Solana, J. (2024). Annelid adult cell type diversity and their pluripotent cellular origins. Nature Communications, 15, 3194. https://doi.org/10.1038/s41467-024-47401-6
Mantica, F., Iñiguez, L. P., Marquez, Y., Permanyer, J., Torres-Mendez, A., Cruz, J., Franch-Marro, X., Tulenko, F., Burguera, D., Bertrand, S., Doyle, T., Nouzova, M., Currie, P. D., Noriega, F. G., Escriva, H., Arnone, M. I., Albertin, C. B., Wotton, K. R., Almudi, I., Martin, D., & Irimia, M. (2024). Evolution of tissue-specific expression of ancestral genes across vertebrates and insects. Nature Ecology & Evolution. https://doi.org/10.1038/s41559-024-02398-5
O’Shea, R., Capuzzo, E., Hemming, V., Grebe, G., Stafford, R., van den Burg, S. W. K., Wood, D., Watson, G., Wells, V., Johnson, T., Erbs, S., W. van Hal, J., Binnerts, B., Collins, A. M., & Howe, C. (2024). Managing offshore multi-use settings: Use of conceptual mapping to reduce uncertainty of co-locating seaweed aquaculture and wind farms. Journal of Environmental Management, 358, 120696. https://doi.org/10.1016/j.jenvman.2024.120696
Petrova, K., Tretiakov, M., Kotov, A., Monsoro-Burq, A. H., & Peshkin, L. (2024). A new atlas to study embryonic cell types in Xenopus. Developmental Biology. https://doi.org/10.1016/j.ydbio.2024.04.003
Liu, X. J. A., Han, S., Frey, S. D., Melillo, J. M., Zhou, J., & DeAngelis, K. M. (2024). Microbial responses to long-term warming differ across soil microenvironments. ISME Communications, ycae051. https://doi.org/10.1093/ismeco/ycae051
Harbeitner, R. C., Wittmers, F., Yung, C. C. M., Eckmann, C. A., Hehenberger, E., Blum, M., Needham, D. M., & Worden, A. Z. (2024). Gradients of bacteria in the oceanic water column reveal finely-resolved vertical distributions. PLOS ONE, 19(4), e0298139. https://doi.org/10.1371/journal.pone.0298139
Roberson, L., Grebe, G., Arzeno-Soltero, I., Bailey, D., Chan, S., Davis, K., Goudey, C., Kite-Powell, H., Lindell, S., Manganelli, D., Marty-Rivera, M., Ng, C., Rollano, F., Saenz, B., Van Cise, A., Waters, T., Yang, Z., & Yarish, C. (2024). Developing Cultivation Systems and Better Management Practices for Caribbean Tropical Seaweeds in US Waters. In Tropical Phyconomy Coalition Development (Vol. 11, pp. 121–141). Springer Nature. https://doi.org/10.1007/978-3-031-47806-2_11
Wang, T., Du, B., Forbrich, I., Zhou, J., Polen, J., Sunderland, E., Balcom, P., Chen, C., & Obrist, D. (2024). Above- and belowground plant mercury dynamics in a salt marsh estuary in Massachusetts, USA. Biogeosciences, 21(6), 1461–1476. https://doi.org/10.5194/bg-21-1461-2024
Grone, J., Poirier, C., Abbott, K., Wittmers, F., Jaeger, G. S., Mahadevan, A., & Worden, A. Z. (2024). A single Prochlorococcus ecotype dominates the tropical Bay of Bengal with ultradian growth. Environmental Microbiology, 26(3), e16605. https://doi.org/10.1111/1462-2920.16605
Gutiérrez-Ibáñez, C., & Wylie, D. R. (2024). Investigation of central pattern generators in the spinal cord of chicken embryos. Journal of Comparative Physiology A. https://doi.org/10.1007/s00359-024-01694-6
McAllister, C. T., & Remsen, D. (2024). A New State Record for the Milliped, Howellaria infesta (Diplopoda: Polydesmida: Xystodesmidae). Entomological News, 131(2), 61–63. https://doi.org/10.3157/021.131.0201
Minařík, M., Modrell, M. S., Gillis, J. A., Campbell, A. S., Fuller, I., Lyne, R., Micklem, G., Gela, D., Pšenička, M., & Baker, C. V. H. (2024). Identification of multiple transcription factor genes potentially involved in the development of electrosensory versus mechanosensory lateral line organs. Frontiers in Cell and Developmental Biology, 12. https://doi.org/10.3389/fcell.2024.1327924
Sackville, M. A., Gillis, J. A., & Brauner, C. J. (2024). The origins of gas exchange and ion regulation in fish gills: Evidence from structure and function. Journal of Comparative Physiology B. https://doi.org/10.1007/s00360-024-01545-5
Deng, H., He, C., Worden, A. Z., & Gong, J. (2024). Employing a triple metabarcoding approach to differentiate active, dormant and dead microeukaryotes in sediments. Environmental Microbiology, 26(3), e16615. https://doi.org/10.1111/1462-2920.16615
Diaz Soria, C. L., Attenborough, T., Lu, Z., Fontenla, S., Graham, J., Hall, C., Thompson, S., Andrews, T. G. R., Rawlinson, K. A., Berriman, M., & Rinaldi, G. (2024). Single-cell transcriptomics of the human parasite Schistosoma mansoni first intra-molluscan stage reveals tentative tegumental and stem-cell regulators. Scientific Reports, 14, 5974. https://doi.org/10.1038/s41598-024-55790-3
Giacomini, J. J., Torres-Morales, J., Tang, J., Dewhirst, F. E., Borisy, G. G., & Mark Welch, J. L. (2024). Spatial ecology of Haemophilus and Aggregatibacter in the human oral cavity. Microbiology Spectrum, e04017-23. https://doi.org/10.1128/spectrum.04017-23
MacCord, K., & Maienschein, J. (2024). Studying Regeneration Through History as a Way of Looking Forward. Journal of the History of Biology. https://doi.org/10.1007/s10739-024-09769-5
Buresch, K. C., Huget, N. D., Brister, W. C., Zhou, E. Y., Lineaweaver, A. S., Rifai, C., Hu, J., Stevenson, Z. E., Boal, J. G., & Hanlon, R. T. (2024). Evidence for tactile 3D shape discrimination by octopus. Journal of Comparative Physiology A. https://doi.org/10.1007/s00359-024-01696-4
Jarriel, S., Formel, N., Ferguson, S., Jensen, F., Apprill, A., & Mooney, T. (2024). Unidentified fish sounds as indicators of coral reef health and comparison to other acoustic methods. Frontiers in Remote Sensing, 5, 1338586. https://doi.org/10.3389/frsen.2024.1338586
McNellis, R., van Gestel, N., Thomas, R. Q., & Smith, N. G. (2024). Winter cover cropping increases albedo and latent heat flux in a Texas High Plains agroecosystem. Ecosphere, 15(2), e4753. https://doi.org/10.1002/ecs2.4753
Fogarty, E. C., Schechter, M. S., Lolans, K., Sheahan, M. L., Veseli, I., Moore, R. M., Kiefl, E., Moody, T., Rice, P. A., Yu, M. K., Mimee, M., Chang, E. B., Ruscheweyh, H.-J., Sunagawa, S., Mclellan, S. L., Willis, A. D., Comstock, L. E., & Eren, A. M. (2024). A cryptic plasmid is among the most numerous genetic elements in the human gut. Cell, 187(5), 1206-1222.e16. https://doi.org/10.1016/j.cell.2024.01.039
McMaken, C. M., & Gribble, K. E. (2024). A free and user-friendly software protocol for the quantification of microfauna swimming behavior. BioTechniques. https://doi.org/10.2144/btn-2024-0001
Yu, M., Fogarty, E., & Eren, A. M. (2024). Diverse plasmid systems and their ecology across human gut metagenomes revealed by PlasX and MobMess. Nature Microbiology, 9(3), 830–847. https://doi.org/10.1038/s41564-024-01610-3
Fricke, A., Bast, F., Moreira-Saporiti, A., Martins Bussanello, G., Msuya, F. E., & Teichberg, M. (2024). Tropical bloom-forming mesoalgae Cladophoropsis sp. And Laurencia sp.—responses to ammonium enrichment and a simulated heatwave. Journal of Phycology. https://doi.org/10.1111/jpy.13435
Henderson, L. C., Wittmers, F., Carlson, C. A., Worden, A. Z., & Close, H. G. (2024). Variable carbon isotope fractionation of photosynthetic communities over depth in an open-ocean euphotic zone. Proceedings of the National Academy of Sciences of the United States of America, 121(10), e2304613121. https://doi.org/10.1073/pnas.2304613121
Hill, A., Schäfer, K., Forbrich, I., & Vargas, R. (2024). Empirical Dynamic Modeling Reveals Complexity of Methane Fluxes in a Temperate Salt Marsh. Journal of Geophysical Research Biogeosciences, 129(2), e2023JG007630. https://doi.org/10.1029/2023jg007630
Bao, Y., Marin, Z., Zhang, C., Neugebauer, K., Baddeley, D., Shribak, M., & Bewersdorf, J. (2024). A correlative quantitative phase contrast and fluorescence super-resolution microscope for imaging molecules in their cellular context. Biophysical Journal, 123(3), 290a.https://doi.org/10.1016/j.bpj.2023.11.1808
MacCord, K. (2024, February). Sex Cells. Natural History, 132(2), 30–35.
Nakamura, M., Kyoda, T., Yoshida, H., Takebayashi-Suzuki, K., Koike, R., Takahashi, E., Moriyama, Y., Wlizla, M., Horb, M. E., & Suzuki, A. (2024). Injury-induced cooperation of InhibinβA and JunB is essential for cell proliferation in Xenopus tadpole tail regeneration. Scientific Reports, 14, 3679.https://doi.org/10.1038/s41598-024-54280-w
Perillo, M., Sepe, R. M., Paganos, P., Toscano, A., & Annunziata, R. (2024). Sea cucumbers: An emerging system in evo-devo. EvoDevo, 15(1), 3.https://doi.org/10.1186/s13227-023-00220-0
Doré, H., Eisenberg, A., Junkins, E., Leventhal, G., Ganesh, A., Cordero, O., Paul, B., Valentine, D., O’Malley, M., & Wilbanks, E. (2024). Targeted hypermutation of putative antigen sensors in multicellular bacteria. Proceedings of the National Academy of Sciences of the United States of America, 121(9), e2316469121. https://doi.org/10.1073/pnas.2316469121
Kwiatkowski, E. R., Rosenthal, J. J. C., & Emery, P. (2024). Clocks at sea: The genome-editing tide is rising. Trends in Genetics. https://doi.org/10.1016/j.tig.2024.01.006
Yin, C., Morita, T., & Parrish, J. Z. (2024). A cell atlas of the larval Aedes aegypti ventral nerve cord. Neural Development, 19(1), 2. https://doi.org/10.1186/s13064-023-00178-8 *Authors from Neurobiology course*
Gordeev, V., Pokrovsky, O., Zhulidov, A., Filippov, A., Gurtovaya, T., Holmes, R., Kosmenko, L., McClelland, J., Peterson, B., & Tank, S. (2024). Dissolved Major and Trace Elements in the Largest Eurasian Arctic Rivers: Ob, Yenisey, Lena, and Kolyma. Water, 16(2), 316. https://doi.org/10.3390/w16020316
Mensinger, A. (2024). So many toadfish, so little time. Journal of the Acoustical Society of America, 155(2), 817–825. https://doi.org/10.1121/10.0024612
Costello, J. H., Colin, S. P., Gemmell, B. J., Dabiri, J. O., & Kanso, E. A. (2024). Turning kinematics of the scyphomedusa Aurelia aurita. Bioinspiration & Biomimetics, 19(2), 026005. https://doi.org/10.1088/1748-3190/ad1db8
Vineis, J. H., Reznikoff, W. S., Antonopoulos, D. A., Koval, J., Chang, E., Fallon, B. R., Paul, B. G., Morrison, H. G., & Sogin, M. L. (2024). A novel conjugative transposon carrying an autonomously amplified plasmid. mBio, e02787-23. https://doi.org/10.1128/mbio.02787-23
Valiela, I., Lloret, J., Chenoweth, K., & Wang, Y. (2024). An example of accelerated changes in current and future ecosystem trajectories: Unexpected rapid transitions in salt marsh vegetation forced by sea level rise. Environmental Challenges, 100842. https://doi.org/10.1016/j.envc.2024.100842
You, Y., Tian, H., Pan, S., Shi, H., Lu, C., Batchelor, W., Cheng, B., Hui, D., Kicklighter, D., Liang, X., Li, X., Melillo, J., Pan, N., Prior, S., & Reilly, J. (2024). Net greenhouse gas balance in U.S. croplands: How can soils be part of the climate solution? Global Change Biology, 30(1), e17109. https://doi.org/10.1111/gcb.17109
Mullowney, M. W., Fiebig, A., Schnizlein, M. K., McMillin, M., Rose, A. R., Koval, J., Rubin, D., Dalal, S., Sogin, M. L., Chang, E. B., Sidebottom, A. M., & Crosson, S. (2024). Microbially catalyzed conjugation of GABA and tyramine to bile acids. Journal of Bacteriology, e00426-23. https://doi.org/10.1128/jb.00426-23
Bulseco, A. N., Murphy, A. E., Giblin, A. E., Tucker, J., Sanderman, J., & Bowen, J. L. (2023). Marsh sediments chronically exposed to nitrogen enrichment contain degraded organic matter that is less vulnerable to decomposition via nitrate reduction. Science of The Total Environment, 169681. https://doi.org/10.1016/j.scitotenv.2023.169681
Hoffmann, C., & Milovanovic, D. (2023). Dipping contacts – a novel type of contact site at the interface between membraneless organelles and membranes. Journal of Cell Science, 136(24), jcs261413. https://doi.org/10.1242/jcs.261413
Maienschein, J. (2023). Everett Mendelsohn at the MBL. Journal of the History of Biology. https://doi.org/10.1007/s10739-023-09754-4
Mark Welch, D., Gould, T., Olins, A., & Olins, D. (2023). The transcriptome of acute dehydration in myeloid leukemic cells. Postepy Biochemii. https://doi.org/10.18388/pb.2021_507
Trouche, B., Schauberger, C., Bouderka, F., Auguet, J.-C., Belser, C., Poulain, J., Thamdrup, B., Wincker, P., Arnaud-Haond, S., Glud, R. N., & Maignien, L. (2023). Distribution and genomic variation of ammonia-oxidizing archaea in abyssal and hadal surface sediments. ISME Communications, 3(1), Article 1. https://doi.org/10.1038/s43705-023-00341-6
Richardson, J., Desai, A., Thom, J., Lindgren, K., Laudon, H., Peichl, M., Nilsson, M., Campeau, A., Järveoja, J., Hawman, P., Mishra, D., Smith, D., D’Acunha, B., Knox, S., Ng, D., Johnson, M., Blackstock, J., Malone, S., Oberbauer, S., Detto, M., Wickland, K. P., Forbrich, I., Weston, N., Hung, J. K. Y., Edgar, C., Euskirchen, E. S., Bret-Harte, S., Dobkowski, J., Kling, G., Kane, E. S., Badiou, P., Bogard, M., Bohrer, G., O’Halloran, T., Ritson, J., Arias-Ortiz, A., Baldocchi, D., Oikawa, P., Shahan, J., & Matsumura, M. (2024). On the Relationship Between Aquatic CO2 Concentration and Ecosystem Fluxes in Some of the World’s Key Wetland Types. Wetlands, 44, 1. https://doi.org/10.1007/s13157-023-01751-x
Arkhipova, I., & Yushenova, I. (2023). To Be Mobile or Not: The Variety of Reverse Transcriptases and Their Recruitment by Host Genomes. Biochemistry (Moscow), 88(11), 1754–1762. https://doi.org/10.1134/s000629792311007x
Bachar-Wikstrom, E., Dhillon, B., Gill Dhillon, N., Abbo, L., Lindén, S. K., & Wikstrom, J. D. (2023). Mass Spectrometry Analysis of Shark Skin Proteins. International Journal of Molecular Sciences, 24(23), Article 23. https://doi.org/10.3390/ijms242316954