Peer-Reviewed Journal Articles

Bennice, C.O., Rayburn, A.P., Brooks, W.R., and Hanlon, R.T. (2019) Fine-scale habitat partitioning facilitates sympatry between two octopus species in a shallow Florida lagoon. Marine Ecology Progress Series 609:151-161.

Chanaday, N., Cousin, M., Milosevic, I., Watanabe, S., and Morgan, J.R. (2019) The synaptic vesicle cycle revisited: new insights into the modes and mechanisms. Journal of Neuroscience 39:8209-8216.

Chandler, T., Shroff, H., Oldenbourg, R., and La Riviere, P. (2019) Spatio-angular fluorescence microscopy I. Basic Theory. Journal of the Optical Society of America A 36(8):1334-1345.

Chandler, T., Shroff, H., Oldenbourg, R., and La Riviere, P. (2019) Spatio-angular fluorescence microscopy II. Paraxial 4f imaging. Journal of the Optical Society of America A 36(8):1346-1360.

Colón-Ramos, D.A., La Riviere, P., Shroff, H., and Oldenbourg, R. (2019) Transforming the development and dissemination of cutting-edge microscopy and computation. Nature Methods 16(8):667-669.

Dion, M.F., Kapoor, M., Sun, Y., Wilson, S., Ryan, J., Vigouroux, A., van Teeffelen, S., Oldenbourg, R., and Garner, E.C. (2019) Bacillus subtilis cell diameter is determined by the opposing actions of two distinct cell wall synthetic systems. Nature Microbiology 4(8):1294-1305.

DuClos, K.T., Dabiri, J.O., Costello, J.H., Colin, S.P., Morgan, J.R., Fogerson, S.M., and Gemmell, B.J. (2019) Thrust generation during steady swimming and acceleration from rest.  Journal of Experimental Biology 222(Pt 22). pii: jeb212464. https://doi: 10.1241/jeb.212464.

Geffeney, S.L., Williams, B.L., Rosenthal, J.J.C., Birk, M.A., Felkins, J., Wisell, C.M., Curry, E.R., and Hanifin, C.T. (2019) Convergent and parallel evolution in a voltage-gated sodium channel underlies TTX-resistance in the Greater Blue-ringed Octopus: Hapalochlaena lunulataToxicon 170:77-84.

Gibson, A., Laubichler, M.D., and Maienschein, J. (2019) Computational history and philosophy of science. Isis 110:497-501.

Hanslik, K.L., Allen, S.R., Harkenrider, T.L., Fogerson, S.M., Guadarrama, E., and Morgan, J.R. (2019) Regenerative capacity in the lamprey spinal cord is not altered after a repeated transection. PLoS One 14(1): e0204193.

Horb, M., Wlizla, M., Abu-Daya, A., McNamara, S., Gajdasik, D., Noble, A., Team NBRP, Team CRBX, Robert, J., James-Zorn, C., and Guille, M.J. (2019) Xenopus resources: transgenic, inbred and mutant animals, training opportunities, and web-based support. Frontiers in Physiology,

Iglesias, T.L., Boal, J.G., Frank, M.G., Zeil, J., and Hanlon, R.T. (2019) Cyclic nature of the REM-like state in the cuttlefish Sepia officinalisJournal of Experimental Biology 222.

Koganti, L., Liu, J., DeMajewski, A., Agostini, M.A., Wong, T.W., Faber, D.S., and Zottoli, S.J. (2019) Invasion of microglia/macrophages and granulocytes into the Mauthner axon myelin sheath following spinal cord injury of the adult goldfish, Carassius auratusJournal of Morphology 281:135-152.

Kuehn, E., Stockinger, A.W., Girard, J., Raible, F., and Özpolat, B.D. (2019) A scalable culturing system for the marine annelid Platynereis dumerilii.  PLoS ONE 14(12): e0226156.

Laubichler, M.D., Maienschein, J., and Renn, J. (2019) Computational history of knowledge: Challenges and opportunities. Isis 110:502-512.

Lutz, H., Ramirez-Puebla, T., Abbo, L., Durand, A., Schlundt, C., Gottel, N., Sjaarda, A., Hanlon, R.T., Gilbert, J.A., and Mark Welch, J.L. (2019) A simple microbiome in the European common cuttlefish, Sepia officinalismSystems 4:e00177-19.

MacCord, K. (2019) The impacts of assumptions on theories of tooth development and evolution at the turn of the nineteenth century. History and Philosophy of the Life Sciences 41:12.

MacCord, K., and Maienschein, J. (2019) Understanding regeneration at different scales. Elife 8, e46569.

Marian, J.E.A.R., Apostolico, L.H., Chiao, C.-C., Hanlon, R.T., Hirohashi, N., Iwata, Y., Mather, J., Sato, N. and Shaw, P. (2019) Male alternative reproductive tactics and associated evolution of anatomical characteristics in loliginid squid. Frontiers in Physiology 10:1281.

Messerli, M.A., Raihan, M.J., Kobylkevich, B.M., Benson, A.C., Bruening, K.S., Shribak, M.Rosenthal, J.J.C., and Sohn, J.J. (2019) Construction and composition of the squid pen from Doryteuthis pealeiiBiological Bulletin 237(1):1-15.

Montiel-Gonzalez, M.R., Diaz Quiroz, J.F., and Rosenthal, J.J.C. (2019) Current strategies for site-directed RNA editing using ADARs. Methods 156:16-24.

Nagashima, R., Hibino, K., Ashwin, S.S., Babokhov, M., Fujishiro, S., Imai, R., Nozaki, T., Tamura, S., Tani, T., Kimura, H., Shribak, M., Kanemaki, M.T., Sasai, M., and Maeshima, K. (2019) Single nucleosome imaging reveals loose genome chromatin networks via active RNA polymerase II. Journal of Cell Biology 218(5):1511-1530.

Nakamura, M., Yoshida, H., Takahashi, E., Wlizla, M., Takebayashi-Suzuki, K., Horb, M.E., and Suzuki, A. (2019) The AP-1 transcription factor JunB functions in Xenopus tail regeneration by positively regulating cell proliferation. Biochemical and Biophysical Research Communications, Dec 4, pii: S0006-291X(19)32180-1. https://doi: 10.1016/jbbrc.2019.11.060. [Epub ahead of print]

Ritschard, E.A., Whitelaw, B., Albertin, C.B., Cooke, I.R., Strugnell, J.M., and Simakov, O. (2019) Coupled genomic evolutionary histories as signatures of organismal innovations in cephalopods. BioEssays 41(12).  https://doi: 10.1002/bies.201900073

Sabin, K.Z., Jiang, P. Gearhart, M.D., Stewart, R., and Echeverri, K. (2019) AP-1cFos/JunB/miR-200a regulate the pro-regenerative glial cell response during axolotl spinal cord regeneration. Communications Biology 2(91).

Sánchez-García, M.A., Zottoli, S.J., and Roberson, L.M. (2019) Hypoxia has a lasting effect on fast-startle behavior of the tropical fish Haemulon plumieriBiological Bulletin 237(1):48-62.

Schnell, A.K., Jozet-Alves, C., Hall, K.C., Radday, L., and Hanlon, R.T. (2019) Fighting and mating success in giant Australian cuttlefish is influenced by behavioural lateralization. Proceedings of the Royal Society B: Biological Sciences 286(1898):20182507.

Williams, T.L., Senft, S.L., Yeo, J., Martín-Martínez, F.J., Kuzirian, A.M., Martin, C.A., DiBona, C.W., Chen, C.T., Dinneen, S.R., Nguyen, H.T., Gomes, C.M., Rosenthal, J.J.C., MacManes, M.D., Chu, F., Buehler, M.J., Hanlon, R.T., and Deravi, L.F. (2019) Dynamic pigmentary and structural coloration within cephalopod chromatophore organs. Nature Communications 10(1):1004.