Scientific Publications | Marine Biological Laboratory

As of January 23, 2023

Truchado-García, M., Perry, K., Cavodeassi, F., Kenny, N., Henry, J., & Grande, C. (2022). A small change with a twist ending—A single residue in EGF-CFC drives Bilaterian asymmetry. Molecular Biology and Evolution. https://doi.org/10.1093/molbev/msac270

Valiela, I., Chenoweth, K., Lloret, J., Teal, J., Howes, B., & Toner, D. G. (2023). Salt marsh vegetation change during a half-century of experimental nutrient addition and climate-driven controls in Great Sippewissett Marsh. The Science of the Total Environment, 867, 161546. https://doi.org/10.1016/j.scitotenv.2023.161546

Chaouni, B., Idrissi Azami, A., Raoui, S., Amzazi, S., Nejjari, C., Bakkali, F., Zaid, E. H., Hamamouch, N., Amaral-Zettler, L., & Ghazal, H. (2023). Spatio-temporal patterns of Synechococcus oligotypes in Moroccan lagoonal environments. Scientific Reports, 13(1), Article 1. https://doi.org/10.1038/s41598-022-27263-y

Mäthger, L. (2022). How the blue-ringed octopus flashes its rings. Physics Today, 75(12), 62–63. https://doi.org/10.1063/PT.3.5146

Ardiel, E., Lauziere, A., Xu, S., Harvey, B., Christensen, R., Nurrish, S., Kaplan, J., & Shroff, H. (2022). Stereotyped behavioral maturation and rhythmic quiescence in C.elegans embryos. eLife, 11. https://doi.org/10.7554/eLife.76836

Rodriguez, F., & Arkhipova, I. (2022). An Overview of Best Practices for Transposable Element Identification, Classification, and Annotation in Eukaryotic Genomes. In Transposable Elements (Vol. 2607, pp. 1–23). Humana Press. https://doi.org/10.1007/978-1-0716-2883-6_1

Spurrell, M., Oulhen, N., Foster, S., Perillo, M., & Wessel, G. (2023). Gene regulatory divergence amongst echinoderms underlies appearance of pigment cells in sea urchin development. Developmental Biology, 494, 13–25. https://doi.org/10.1016/j.ydbio.2022.11.008

Barrett, C. J., Bensbai, J., Broadhurst, M. K., Bustamante, P., Clark, R., Cooke, G. M., Di Cosmo, A., Drerup, C., Escolar, O., Fernández-Álvarez, F. A., Ganias, K., Hall, K. C., Hanlon, R. T., Hernández-Urcera, J., Hua, Q. Q. H., Lacoue-Labarthe, T., Lewis, J., Lishchenko, F., Maselli, V., Moustahfid, H., Nakajima, R., O’Brien, C. E., Parkhouse, L., Pengelly, S., Pierce, G. J., Ramirez, J. G., Robin, J.-P., Sajikumar, K. K., Sasikumar, G., Smith, C. L., Villanueva, R., & Yến, D. T. H. (2022). Cuttlefish conservation: A global review of methods to ameliorate unwanted fishing mortality and other anthropogenic threats to sustainability. ICES Journal of Marine Science, 0, 1-18. https://doi.org/10.1093/icesjms/fsac200

Domeignoz‐Horta, L., Pold, G., Erb, H., Sebag, D., Verrecchia, E., Northen, T., Louie, K., Eloe‐Fadrosh, E., Pennacchio, C., Knorr, M., Frey, S., Melillo, J., & DeAngelis, K. (2022). Substrate availability and not thermal‐acclimation controls microbial temperature sensitivity response to long term warming. Global Change Biology. https://doi.org/10.1111/gcb.16544

Matute, J., Duan, J., Flak, M., Griebel, P., Tascon-Arcila, J., Doms, S., Hanley, T., Antanaviciute, A., Gundrum, J., Mark Welch, J. L., Sit, B., Abtahi, S., Fuhler, G., Grootjans, J., Tran, F., Stengel, S., White, J., Krupka, N., Haller, D., Clare, S., Lawley, T. D., Kaser, A., Simmons, A., Glickman, J. N., Bry, L., Rosenstiel, P., Borisy, G., Waldor, M. K., Baines, J. F., Turner, J. R., & Blumberg, R. (2022). Intelectin-1 binds and alters the localization of the mucus barrier–modifying bacterium Akkermansia muciniphila. Journal of Experimental Medicine, 220(1), e20211938. https://doi.org/10.1084/jem.20211938

Rajabi, M., Lavrentovich, O., & Shribak, M. (2022). Instantaneous mapping of liquid crystal orientation using a polychromatic polarizing microscope. Liquid Crystals. https://doi.org/10.1080/02678292.2022.2142883

Chitale, P., Lemenze, A., Fogarty, E., Shah, A., Grady, C., Odom-Mabey, A., Johnson, W., Yang, J., Eren, A., Brosch, R., Kumar, P., & Alland, D. (2022). A comprehensive update to the Mycobacterium tuberculosis H37Rv reference genome. Nature Communications, 13(1), 7068. https://doi.org/10.1038/s41467-022-34853-x

Cleary, K., Fakhri, A., Dionne, E., Warner, M., DeGiorgis, J., & Cornely, K. (2022). Mycobacteriophage Tarkin: A Cluster E Phage. Microbiology Resource Announcements, e00961–e00922. https://doi.org/10.1128/mra.00961-22

Kittelberger, J. M., Franzini-Armstrong, C., & Boncompagni, S. (2022). Ca2+ entry units in a superfast fish muscle. Frontiers in Physiology, 13. https://doi.org/10.3389/fphys.2022.1036594

DeWolf, E., Brock, M., Calder, W., Kliebenstein, D., Katz, E., Li, B., Morrison, H., Maïgnien, L., & Weinig, C. (2022). The rhizosphere microbiome and host plant glucosinolates exhibit feedback cycles in Brassica rapa. Molecular Ecology. https://doi.org/10.1111/mec.16782

Espino, C. M., Lewis, C. M., Ortiz, S., Dalal, M. S., Garlapalli, S., Wells, K. M., O’Neil, D. A., Wilkinson, K. A., & Griffith, T. N. (2022). NaV1.1 is essential for proprioceptive signaling and motor behaviors. eLife, 11, e79917. https://doi.org/10.7554/eLife.79917

Kite-Powell, H., Ask, E., Augyte, S., Bailey, D., Decker, J., Goudey, C., Grebe, G., Li, Y., Lindell, S., Manganelli, D., Marty-Rivera, M., Ng, C., Roberson, L., Stekoll, M., Umanzor, S., & Yarish, C. (2022). Estimating production cost for large-scale seaweed farms. Applied Phycology, 3(1), 435–445. https://doi.org/10.1080/26388081.2022.2111271

Niu, M., Deng, L., Su, L., Ruff, S., Yang, N., Luo, M., Qi, Q., Li, J., & Wang, F. (2022). Methane supply drives prokaryotic community assembly and network at cold seeps of the South China Sea. Molecular Ecology. https://doi.org/10.1111/mec.16786

Sterner, Z. R., Jabrah, A., Shaidani, N.-I., Horb, M. E., Dockery, R., Paul, B., & Buchholz, D. R. (2023). Development and metamorphosis in frogs deficient in the thyroid hormone transporter MCT8. General and Comparative Endocrinology, 331, 114179. https://doi.org/10.1016/j.ygcen.2022.114179

The people behind the papers – Douglas Houston and Marko Horb. (2022). Development, 149(17), dev201215. https://doi.org/10.1242/dev.201215

Li, Y., Su, Y., Guo, M., Han, X., Liu, J., Vishwasrao, H. D., Li, X., Christensen, R., Sengupta, T., Moyle, M. W., Rey-Suarez, I., Chen, J., Upadhyaya, A., Usdin, T. B., Colón-Ramos, D. A., Liu, H., Wu, Y., & Shroff, H. (2022). Incorporating the image formation process into deep learning improves network performance. Nature Methods, 19, 1427-1437. https://doi.org/10.1038/s41592-022-01652-7

Sun, S., & Brecht, M. (2022). Relative enlargement of the medial preoptic nucleus in the Etruscan shrew, the smallest torpid mammal. Scientific Reports, 12, 18602. https://doi.org/10.1038/s41598-022-22320-y

Beca-Carretero, P., Azcarate-Garcia, T., Teichberg, M., Patra, P., Feroze, F., Gonzalez, M. J., Medina, I., & Winters, G. (2022). Predicted warming intensifies the negative effects of nutrient increase on tropical seagrass: A physiological and fatty acid approach. Ecological Indicators, 142, 109184. https://doi.org/10.1016/j.ecolind.2022.109184

Carey, J., Kroeger, K., & Tang, J. (2022). Higher Temperature Sensitivity of Ecosystem Respiration in Low Marsh Compared to High Elevation Marsh Ecosystems. Journal of Geophysical Research Biogeosciences. https://doi.org/10.1029/2022jg006832

Ma, T., Parker, T., Fetcher, N., Unger, S. L., Gewirtzman, J., Moody, M. L., & Tang, J. (2022). Leaf and root phenology and biomass of Eriophorum vaginatum in response to warming in the Arctic. Journal of Plant Ecology, 15(5), 1091–1105. https://doi.org/10.1093/jpe/rtac010

Kaushal, N., Tanzil, J. T., I., Zhou, Y., Ong, M. R., Goodkin, N. F., & Martin, P. (2022). Environmental Calibration of Coral Luminescence as a Proxy for Terrigenous Dissolved Organic Carbon Concentration in Tropical Coastal Oceans. Geochemistry, Geophysics, Geosystems, 23(10), e2022GC010529. https://doi.org/10.1029/2022GC010529

Sami, A. B., & Gatlin, J. C. (2022). Dynein-dependent collection of membranes defines the architecture and position of microtubule asters in isolated, geometrically confined volumes of cell-free extracts. Molecular Biology of the Cell. https://doi.org/10.1091/mbc.E22-03-0074

Shindyapina, A., V., Cho, Y., Kaya, A., Tyshkovskiy, A., Castro, J. P., Deik, A., Gordevicius, J., Poganik, J. R., Clish, C. B., Horvath, S., Peshkin, L., & Gladyshev, V. N. (2022). Rapamycin treatment during development extends life span and health span of male mice and Daphnia magna. Science Advances, 8(37). https://doi.org/10.1126/sciadv.abo5482

Harris, L. G., Shure, A., Kuzirian, A., Gosliner, T. M., & Donodoo, S. A. (2022). A European nudibranch new to the Gulf of Maine: Doris pseudoargus Rapp, 1827. Biological Invasions. https://doi.org/10.1007/s10530-022-02917-0

Smith, J. J., Kenny, I. W., Wolff, C., Cray, R., Kumar, A., Sherwood, D. R., & Matus, D. Q. (2022). A light sheet fluorescence microscopy protocol for Caenorhabditis elegans larvae and adults. Frontiers in Cell and Developmental Biology, 10. https://www.frontiersin.org/articles/10.3389/fcell.2022.1012820

Avila, C., Bunuel, X., Carmona, F., Cotado, A., Sacristan-Soriano, O., & Angulo-Preckler, C. (2022). Would Antarctic Marine Benthos Survive Alien Species Invasions? What Chemical Ecology May Tell Us. Marine Drugs, 20(9), 543. https://doi.org/10.3390/md20090543

Cordeiro, M., Costello, J., Gemmell, B., Sutherland, K., & Colin, S. (2022). Oceanic lobate ctenophores possess feeding mechanics similar to the impactful coastal species Mnemiopsis leidyi. Limnology and Oceanography. https://doi.org/10.1002/lno.12232

Echeverri, K. (2022). Zebrafishing for enhancers of hearing regeneration. Cell Genomics, 2(9), 100178. https://doi.org/10.1016/j.xgen.2022.100178

Eugster, W., DelSontro, T., Laundre, J., Dobkowski, J., Shaver, G., & Kling, G. (2022). Effects of long-term climate trends on the methane and CO₂ exchange processes of Toolik Lake, Alaska. Frontiers in Environmental Science, 10, 948529. https://doi.org/10.3389/fenvs.2022.948529

McLean, A., Torres‐Morales, J., Dewhirst, F., Borisy, G., & Welch, J. (2022). Site‐tropism of streptococci in the oral microbiome. Molecular Oral Microbiology. https://doi.org/10.1111/omi.12387

Conte, M., Pàmies, R., Honda, M., & Herndl, G. (2022). Editorial: The oceanic particle flux and its cycling within the deep water column. Frontiers in Earth Science, 10, 1020065. https://doi.org/10.3389/feart.2022.1020065

Rhodes, H. J., & Amo, M. (2022). Electrophysiological responses to conspecific odorants in Xenopus laevis show potential for chemical signaling. PLOS ONE, 17(9), e0273035. https://doi.org/10.1371/journal.pone.0273035

Worliczek, H. L. (2022). “How Many Individuals Consider Themselves to Be Cell Biologists but Are Informed by the Journal That Their Work Is Not Cell Biology”. Berichte Zur Wissenschaftsgeschichte, 45(3), 344–354. https://doi.org/10.1002/bewi.202200019

Lloret, J., Valva, C., Valiela, I., Rheuban, J., Jakuba, R. W., Hanacek, D., Chenoweth, K., & Elmstrom, E. (2022). Decadal trajectories of land-sea couplings: Nitrogen loads and interception in New England watersheds, discharges to estuaries, and water quality effects. Estuarine, Coastal and Shelf Science, 277, 108057. https://doi.org/10.1016/j.ecss.2022.108057

Morillo-Lopez, V., Sjaarda, A., Islam, I., Borisy, G., & Mark Welch, J. (2022). Corncob structures in dental plaque reveal microhabitat taxon specificity. Microbiome, 10(1). https://doi.org/10.1186/s40168-022-01323-x

You, Y., Tian, H., Pan, S., Shi, H., Bian, Z., Gurgel, A., Huang, Y., Kicklighter, D., Liang, X.-Z., Lu, C., Melillo, J., Miao, R., Pan, N., Reilly, J., Ren, W., Xu, R., Yang, J., Yu, Q., & Zhang, J. (2022). Incorporating dynamic crop growth processes and management practices into a terrestrial biosphere model for simulating crop production in the United States: Toward a unified modeling framework. Agricultural and Forest Meteorology, 325, 109144. https://doi.org/10.1016/j.agrformet.2022.109144

Hudson, A., Peters, D., Blair, J., Childers, D., Doran, P., Geil, K., Gooseff, M., Gross, K., Haddad, N., Pastore, M., Rudgers, J., Sala, O., Seabloom, E., & Shaver, G. (2022). Cross-Site Comparisons of Dryland Ecosystem Response to Climate Change in the US Long-Term Ecological Research Network. BioScience. https://doi.org/10.1093/biosci/biab134

Lovas, J. R., & Yuste, R. (2022). Dissociation and reaggregation of Hydra vulgaris for studies of self-organization. STAR Protocols, 3(3), 101504. https://doi.org/10.1016/j.xpro.2022.101504

Wittmers, F., Needham, D. M., Hehenberger, E., Giovannoni, S. J., & Worden, A. Z. (2022). Genomes from Uncultivated Pelagiphages Reveal Multiple Phylogenetic Clades Exhibiting Extensive Auxiliary Metabolic Genes and Cross-Family Multigene Transfers. mSystems. https://doi.org/10.1128/msystems.01522-21

Zhang, H., Zammit, M., Kao, C.-M., Govind, A., Mitchell, S., Holderman, N., Bhuiyan, M., Freifelder, R., Zhuang, X., Mukherjee, J., Chen, C.-T., & Green, W. (2022). Trapping of Nicotinic Acetylcholine Receptor Ligands Assayed by in vitro Cellular Studies and in vivo PET Imaging. Journal of Neuroscience, jn-rm-2484-21. https://doi.org/10.1523/jneurosci.2484-21.2022

Houston, D., Elliott, K., Coppenrath, K., Wlizla, M., & Horb, M. (2022). Maternal Wnt11b regulates cortical rotation during Xenopus axis formation: Analysis of maternal-effect wnt11b mutants. Development. https://doi.org/10.1242/dev.200552

Miranda, K., Weigel, B., Fogarty, E., Veseli, I., Giblin, A., Eren, A., & Pfister, C. (2022). The Diversity and Functional Capacity of Microbes Associated with Coastal Macrophytes. mSystems, e0059222. https://doi.org/10.1128/msystems.00592-22

Parkinson, R. H., Fecher, C., & Gray, J. R. (2022). Chronic exposure to insecticides impairs honeybee optomotor behaviour. Frontiers in Insect Science, 2. https://www.frontiersin.org/articles/10.3389/finsc.2022.936826

Paul, B., Yushenova, I., & Arkhipova, I. (2022). The Diversity of Reverse Transcriptases. In Retrotransposons and Human Disease (pp. 1–28). https://doi.org/10.1142/9789811249228_0001

Drinkwater, E., Allen, W., Endler, J., Hanlon, R., Holmes, G., Homziak, N., Kang, C., Leavell, B., Lehtonen, J., Loeffler‐Henry, K., Ratcliffe, J., Rowe, C., Ruxton, G., Sherratt, T., Skelhorn, J., Skojec, C., Smart, H., White, T., Yack, J., Young, C. M., & Umbers, K. D. L. (2022). A synthesis of deimatic behaviour. Biological Reviews. https://doi.org/10.1111/brv.12891