Recent Scientific Publications

As of April 15, 2024

Liu, X. J. A., Han, S., Frey, S. D., Melillo, J. M., Zhou, J., & DeAngelis, K. M. (2024). Microbial responses to long-term warming differ across soil microenvironments. ISME Communications, ycae051.

Harbeitner, R. C., Wittmers, F., Yung, C. C. M., Eckmann, C. A., Hehenberger, E., Blum, M., Needham, D. M., & Worden, A. Z. (2024). Gradients of bacteria in the oceanic water column reveal finely-resolved vertical distributions. PLOS ONE19(4), e0298139.

Roberson, L.Grebe, G., Arzeno-Soltero, I., Bailey, D., Chan, S., Davis, K., Goudey, C., Kite-Powell, H., Lindell, S., Manganelli, D., Marty-Rivera, M., Ng, C., Rollano, F., Saenz, B., Van Cise, A., Waters, T., Yang, Z., & Yarish, C. (2024). Developing Cultivation Systems and Better Management Practices for Caribbean Tropical Seaweeds in US Waters. In Tropical Phyconomy Coalition Development (Vol. 11, pp. 121–141). Springer Nature.

Wang, T., Du, B., Forbrich, I., Zhou, J., Polen, J., Sunderland, E., Balcom, P., Chen, C., & Obrist, D. (2024). Above- and belowground plant mercury dynamics in a salt marsh estuary in Massachusetts, USA. Biogeosciences21(6), 1461–1476.

Grone, J., Poirier, C., Abbott, K., Wittmers, F., Jaeger, G. S., Mahadevan, A., & Worden, A. Z. (2024). A single Prochlorococcus ecotype dominates the tropical Bay of Bengal with ultradian growth. Environmental Microbiology26(3), e16605.

Gutiérrez-Ibáñez, C., & Wylie, D. R. (2024). Investigation of central pattern generators in the spinal cord of chicken embryos. Journal of Comparative Physiology A.

McAllister, C. T., & Remsen, D. (2024). A New State Record for the Milliped, Howellaria infesta (Diplopoda: Polydesmida: Xystodesmidae). Entomological News131(2), 61–63.

Minařík, M., Modrell, M. S., Gillis, J. A., Campbell, A. S., Fuller, I., Lyne, R., Micklem, G., Gela, D., Pšenička, M., & Baker, C. V. H. (2024). Identification of multiple transcription factor genes potentially involved in the development of electrosensory versus mechanosensory lateral line organs. Frontiers in Cell and Developmental Biology12.

Sackville, M. A.Gillis, J. A., & Brauner, C. J. (2024). The origins of gas exchange and ion regulation in fish gills: Evidence from structure and function. Journal of Comparative Physiology B.

Deng, H., He, C., Worden, A. Z., & Gong, J. (2024). Employing a triple metabarcoding approach to differentiate active, dormant and dead microeukaryotes in sediments. Environmental Microbiology26(3), e16615.

Diaz Soria, C. L., Attenborough, T., Lu, Z., Fontenla, S., Graham, J., Hall, C., Thompson, S., Andrews, T. G. R., Rawlinson, K. A., Berriman, M., & Rinaldi, G. (2024). Single-cell transcriptomics of the human parasite Schistosoma mansoni first intra-molluscan stage reveals tentative tegumental and stem-cell regulators. Scientific Reports14, 5974.

Giacomini, J. J., Torres-Morales, J., Tang, J., Dewhirst, F. E., Borisy, G. G., & Mark Welch, J. L. (2024). Spatial ecology of Haemophilus and Aggregatibacter in the human oral cavity. Microbiology Spectrum, e04017-23.

MacCord, K., & Maienschein, J. (2024). Studying Regeneration Through History as a Way of Looking Forward. Journal of the History of Biology.

Buresch, K. C., Huget, N. D., Brister, W. C., Zhou, E. Y., Lineaweaver, A. S., Rifai, C., Hu, J., Stevenson, Z. E., Boal, J. G., & Hanlon, R. T. (2024). Evidence for tactile 3D shape discrimination by octopus. Journal of Comparative Physiology A.

Jarriel, S., Formel, N., Ferguson, S., Jensen, F., Apprill, A., & Mooney, T. (2024). Unidentified fish sounds as indicators of coral reef health and comparison to other acoustic methods. Frontiers in Remote Sensing5, 1338586.

McNellis, R., van Gestel, N., Thomas, R. Q., & Smith, N. G. (2024). Winter cover cropping increases albedo and latent heat flux in a Texas High Plains agroecosystem. Ecosphere15(2), e4753.

Fogarty, E. C., Schechter, M. S., Lolans, K., Sheahan, M. L., Veseli, I., Moore, R. M., Kiefl, E., Moody, T., Rice, P. A., Yu, M. K., Mimee, M., Chang, E. B., Ruscheweyh, H.-J., Sunagawa, S., Mclellan, S. L., Willis, A. D., Comstock, L. E., & Eren, A. M. (2024). A cryptic plasmid is among the most numerous genetic elements in the human gut. Cell187(5), 1206-1222.e16.

McMaken, C. M., & Gribble, K. E. (2024). A free and user-friendly software protocol for the quantification of microfauna swimming behavior. BioTechniques.

Yu, M., Fogarty, E., & Eren, A. M. (2024). Diverse plasmid systems and their ecology across human gut metagenomes revealed by PlasX and MobMess. Nature Microbiology9(3), 830–847.

Fricke, A., Bast, F., Moreira-Saporiti, A., Martins Bussanello, G., Msuya, F. E., & Teichberg, M. (2024). Tropical bloom-forming mesoalgae Cladophoropsis sp. And Laurencia sp.—responses to ammonium enrichment and a simulated heatwave. Journal of Phycology.

Henderson, L. C., Wittmers, F., Carlson, C. A., Worden, A. Z., & Close, H. G. (2024). Variable carbon isotope fractionation of photosynthetic communities over depth in an open-ocean euphotic zone. Proceedings of the National Academy of Sciences of the United States of America121(10), e2304613121.

Hill, A., Schäfer, K., Forbrich, I., & Vargas, R. (2024). Empirical Dynamic Modeling Reveals Complexity of Methane Fluxes in a Temperate Salt Marsh. Journal of Geophysical Research Biogeosciences129(2), e2023JG007630.

Bao, Y., Marin, Z., Zhang, C., Neugebauer, K., Baddeley, D., Shribak, M., & Bewersdorf, J. (2024). A correlative quantitative phase contrast and fluorescence super-resolution microscope for imaging molecules in their cellular context. Biophysical Journal123(3), 290a.

MacCord, K. (2024, February). Sex Cells. Natural History132(2), 30–35.

Nakamura, M., Kyoda, T., Yoshida, H., Takebayashi-Suzuki, K., Koike, R., Takahashi, E., Moriyama, Y., Wlizla, M., Horb, M. E., & Suzuki, A. (2024). Injury-induced cooperation of InhibinβA and JunB is essential for cell proliferation in Xenopus tadpole tail regeneration. Scientific Reports14, 3679.

Perillo, M., Sepe, R. M., Paganos, P., Toscano, A., & Annunziata, R. (2024). Sea cucumbers: An emerging system in evo-devo. EvoDevo15(1), 3.

Doré, H., Eisenberg, A., Junkins, E., Leventhal, G., Ganesh, A., Cordero, O., Paul, B., Valentine, D., O’Malley, M., & Wilbanks, E. (2024). Targeted hypermutation of putative antigen sensors in multicellular bacteria. Proceedings of the National Academy of Sciences of the United States of America121(9), e2316469121.

Kwiatkowski, E. R., Rosenthal, J. J. C., & Emery, P. (2024). Clocks at sea: The genome-editing tide is rising. Trends in Genetics.

Yin, C.Morita, T., & Parrish, J. Z. (2024). A cell atlas of the larval Aedes aegypti ventral nerve cord. Neural Development19(1), 2. *Authors from Neurobiology course*

Gordeev, V., Pokrovsky, O., Zhulidov, A., Filippov, A., Gurtovaya, T., Holmes, R., Kosmenko, L., McClelland, J.Peterson, B., & Tank, S. (2024). Dissolved Major and Trace Elements in the Largest Eurasian Arctic Rivers: Ob, Yenisey, Lena, and Kolyma. Water16(2), 316.

Mensinger, A. (2024). So many toadfish, so little time. Journal of the Acoustical Society of America155(2), 817–825.

Costello, J. H.Colin, S. P., Gemmell, B. J., Dabiri, J. O., & Kanso, E. A. (2024). Turning kinematics of the scyphomedusa Aurelia auritaBioinspiration & Biomimetics19(2), 026005.

Vineis, J. H.Reznikoff, W. S., Antonopoulos, D. A., Koval, J., Chang, E., Fallon, B. R.Paul, B. G.Morrison, H. G., & Sogin, M. L. (2024). A novel conjugative transposon carrying an autonomously amplified plasmid. mBio, e02787-23.

Valiela, I.Lloret, J.Chenoweth, K., & Wang, Y. (2024). An example of accelerated changes in current and future ecosystem trajectories: Unexpected rapid transitions in salt marsh vegetation forced by sea level rise. Environmental Challenges, 100842.

You, Y., Tian, H., Pan, S., Shi, H., Lu, C., Batchelor, W., Cheng, B., Hui, D., Kicklighter, D., Liang, X., Li, X., Melillo, J., Pan, N., Prior, S., & Reilly, J. (2024). Net greenhouse gas balance in U.S. croplands: How can soils be part of the climate solution? Global Change Biology30(1), e17109.

Mullowney, M. W., Fiebig, A., Schnizlein, M. K., McMillin, M., Rose, A. R., Koval, J., Rubin, D., Dalal, S., Sogin, M. L., Chang, E. B., Sidebottom, A. M., & Crosson, S. (2024). Microbially catalyzed conjugation of GABA and tyramine to bile acids. Journal of Bacteriology, e00426-23.

Bulseco, A. N., Murphy, A. E., Giblin, A. E.Tucker, J., Sanderman, J., & Bowen, J. L. (2023). Marsh sediments chronically exposed to nitrogen enrichment contain degraded organic matter that is less vulnerable to decomposition via nitrate reduction. Science of The Total Environment, 169681.

Hoffmann, C., & Milovanovic, D. (2023). Dipping contacts – a novel type of contact site at the interface between membraneless organelles and membranes. Journal of Cell Science136(24), jcs261413.

Maienschein, J. (2023). Everett Mendelsohn at the MBL. Journal of the History of Biology.

Mark Welch, D., Gould, T., Olins, A., & Olins, D. (2023). The transcriptome of acute dehydration in myeloid leukemic cells. Postepy Biochemii.

Trouche, B., Schauberger, C., Bouderka, F., Auguet, J.-C., Belser, C., Poulain, J., Thamdrup, B., Wincker, P., Arnaud-Haond, S., Glud, R. N., & Maignien, L. (2023). Distribution and genomic variation of ammonia-oxidizing archaea in abyssal and hadal surface sediments. ISME Communications3(1), Article 1.

Richardson, J., Desai, A., Thom, J., Lindgren, K., Laudon, H., Peichl, M., Nilsson, M., Campeau, A., Järveoja, J., Hawman, P., Mishra, D., Smith, D., D’Acunha, B., Knox, S., Ng, D., Johnson, M., Blackstock, J., Malone, S., Oberbauer, S., Detto, M., Wickland, K. P., Forbrich, I., Weston, N., Hung, J. K. Y., Edgar, C., Euskirchen, E. S., Bret-Harte, S., Dobkowski, J., Kling, G., Kane, E. S., Badiou, P., Bogard, M., Bohrer, G., O’Halloran, T., Ritson, J., Arias-Ortiz, A., Baldocchi, D., Oikawa, P., Shahan, J., & Matsumura, M. (2024). On the Relationship Between Aquatic CO2 Concentration and Ecosystem Fluxes in Some of the World’s Key Wetland Types. Wetlands44, 1.

Arkhipova, I., & Yushenova, I. (2023). To Be Mobile or Not: The Variety of Reverse Transcriptases and Their Recruitment by Host Genomes. Biochemistry (Moscow)88(11), 1754–1762.

Bachar-Wikstrom, E., Dhillon, B., Gill Dhillon, N., Abbo, L., Lindén, S. K., & Wikstrom, J. D. (2023). Mass Spectrometry Analysis of Shark Skin Proteins. International Journal of Molecular Sciences24(23), Article 23.

Fiebig, A., Schnizlein, M. K., Pena-Rivera, S., Trigodet, F., Dubey, A. A., Hennessy, M. K., Basu, A., Pott, S., Dalal, S., Rubin, D., Sogin, M. L., Eren, A. M., Chang, E. B., & Crosson, S. (2023). Bile acid fitness determinants of a Bacteroides fragilis isolate from a human pouchitis patient. mBio, e02830-23.

Ahkami, A. H., Qafoku, O., Roose, T., Mou, Q., Lu, Y., Cardon, Z. G., Wu, Y., Chou, C., Fisher, J. B., Varga, T., Handakumbura, P., Aufrecht, J. A., Bhattacharjee, A., & Moran, J. J. (2024). Emerging sensing, imaging, and computational technologies to scale nano-to macroscale rhizosphere dynamics – Review and research perspectives. Soil Biology and Biochemistry189, 109253.

Fisher, G.Roman-Vendrell, C.Brady, E., & Morgan, J. (2023). Ɑ-synuclein alters the morphology of synaptic mitochondria in giant axons of sea lamprey. IBRO Neuroscience Reports15, s560.

Rees, J. M., Palmer, M. A., & Gillis, J. A. (2023). Fgf signalling is required for gill slit formation in the skate, Leucoraja erinaceaDevelopmental Biology.

Arkhipova, I. R., Burns, K. H., Chiappinelli, K. B., Chuong, E. B., Goubert, C., Guarné, A., Larracuente, A. M., Lee, E. A., & Levin, H. L. (2023). Meeting report: Transposable elements at the crossroads of evolution, health and disease 2023. Mobile DNA14.

Jimenez-Guri, E., Murano, C., Paganos, P., & Arnone, M. I. (2023). PVC pellet leachates affect adult immune system and embryonic development but not reproductive capacity in the sea urchin Paracentrotus lividusMarine Pollution Bulletin.