Scientific Publications

As of October 3, 2022

Echeverri, K. (2022). Zebrafishing for enhancers of hearing regeneration. Cell Genomics, 2(9), 100178. https://doi.org/10.1016/j.xgen.2022.100178

Eugster, W., DelSontro, T., Laundre, J., Dobkowski, J., Shaver, G., & Kling, G. (2022). Effects of long-term climate trends on the methane and CO₂ exchange processes of Toolik Lake, Alaska. Frontiers in Environmental Science, 10, 948529. https://doi.org/10.3389/fenvs.2022.948529

McLean, A., Torres‐Morales, J., Dewhirst, F., Borisy, G., & Welch, J. (2022). Site‐tropism of streptococci in the oral microbiome. Molecular Oral Microbiology. https://doi.org/10.1111/omi.12387

Conte, M., Pàmies, R., Honda, M., & Herndl, G. (2022). Editorial: The oceanic particle flux and its cycling within the deep water column. Frontiers in Earth Science, 10, 1020065. https://doi.org/10.3389/feart.2022.1020065

Rhodes, H. J., & Amo, M. (2022). Electrophysiological responses to conspecific odorants in Xenopus laevis show potential for chemical signaling. PLOS ONE, 17(9), e0273035. https://doi.org/10.1371/journal.pone.0273035

Worliczek, H. L. (2022). “How Many Individuals Consider Themselves to Be Cell Biologists but Are Informed by the Journal That Their Work Is Not Cell Biology”. Berichte Zur Wissenschaftsgeschichte, 45(3), 344–354. https://doi.org/10.1002/bewi.202200019

Lloret, J., Valva, C., Valiela, I., Rheuban, J., Jakuba, R. W., Hanacek, D., Chenoweth, K., & Elmstrom, E. (2022). Decadal trajectories of land-sea couplings: Nitrogen loads and interception in New England watersheds, discharges to estuaries, and water quality effects. Estuarine, Coastal and Shelf Science, 277, 108057. https://doi.org/10.1016/j.ecss.2022.108057

Morillo-Lopez, V., Sjaarda, A., Islam, I., Borisy, G., & Mark Welch, J. (2022). Corncob structures in dental plaque reveal microhabitat taxon specificity. Microbiome, 10(1). https://doi.org/10.1186/s40168-022-01323-x

You, Y., Tian, H., Pan, S., Shi, H., Bian, Z., Gurgel, A., Huang, Y., Kicklighter, D., Liang, X.-Z., Lu, C., Melillo, J., Miao, R., Pan, N., Reilly, J., Ren, W., Xu, R., Yang, J., Yu, Q., & Zhang, J. (2022). Incorporating dynamic crop growth processes and management practices into a terrestrial biosphere model for simulating crop production in the United States: Toward a unified modeling framework. Agricultural and Forest Meteorology, 325, 109144. https://doi.org/10.1016/j.agrformet.2022.109144

Hudson, A., Peters, D., Blair, J., Childers, D., Doran, P., Geil, K., Gooseff, M., Gross, K., Haddad, N., Pastore, M., Rudgers, J., Sala, O., Seabloom, E., & Shaver, G. (2022). Cross-Site Comparisons of Dryland Ecosystem Response to Climate Change in the US Long-Term Ecological Research Network. BioScience. https://doi.org/10.1093/biosci/biab134

Lovas, J. R., & Yuste, R. (2022). Dissociation and reaggregation of Hydra vulgaris for studies of self-organization. STAR Protocols, 3(3), 101504. https://doi.org/10.1016/j.xpro.2022.101504

Wittmers, F., Needham, D. M., Hehenberger, E., Giovannoni, S. J., & Worden, A. Z. (2022). Genomes from Uncultivated Pelagiphages Reveal Multiple Phylogenetic Clades Exhibiting Extensive Auxiliary Metabolic Genes and Cross-Family Multigene Transfers. mSystems. https://doi.org/10.1128/msystems.01522-21

Zhang, H., Zammit, M., Kao, C.-M., Govind, A., Mitchell, S., Holderman, N., Bhuiyan, M., Freifelder, R., Zhuang, X., Mukherjee, J., Chen, C.-T., & Green, W. (2022). Trapping of Nicotinic Acetylcholine Receptor Ligands Assayed by in vitro Cellular Studies and in vivo PET Imaging. Journal of Neuroscience, jn-rm-2484-21. https://doi.org/10.1523/jneurosci.2484-21.2022

Houston, D., Elliott, K., Coppenrath, K., Wlizla, M., & Horb, M. (2022). Maternal Wnt11b regulates cortical rotation during Xenopus axis formation: Analysis of maternal-effect wnt11b mutants. Development. https://doi.org/10.1242/dev.200552

Miranda, K., Weigel, B., Fogarty, E., Veseli, I., Giblin, A., Eren, A., & Pfister, C. (2022). The Diversity and Functional Capacity of Microbes Associated with Coastal Macrophytes. mSystems, e0059222. https://doi.org/10.1128/msystems.00592-22

Parkinson, R. H., Fecher, C., & Gray, J. R. (2022). Chronic exposure to insecticides impairs honeybee optomotor behaviour. Frontiers in Insect Science, 2. https://www.frontiersin.org/articles/10.3389/finsc.2022.936826

Paul, B., Yushenova, I., & Arkhipova, I. (2022). The Diversity of Reverse Transcriptases. In Retrotransposons and Human Disease (pp. 1–28). https://doi.org/10.1142/9789811249228_0001

Drinkwater, E., Allen, W., Endler, J., Hanlon, R., Holmes, G., Homziak, N., Kang, C., Leavell, B., Lehtonen, J., Loeffler‐Henry, K., Ratcliffe, J., Rowe, C., Ruxton, G., Sherratt, T., Skelhorn, J., Skojec, C., Smart, H., White, T., Yack, J., Young, C. M., & Umbers, K. D. L. (2022). A synthesis of deimatic behaviour. Biological Reviews. https://doi.org/10.1111/brv.12891

Eagle, M., Kroeger, K., Spivak, A., Wang, F., Tang, J., Abdul-Aziz, O., Ishtiaq, K., O’Keefe Suttles, J., & Mann, A. (2022). Soil carbon consequences of historic hydrologic impairment and recent restoration in coastal wetlands. The Science of The Total Environment, 848, 157682. https://doi.org/10.1016/j.scitotenv.2022.157682

Simona, C., Venturi, S., Tassi, F., Simona, R., Cabassi, J., Capecchiacci, F., Bicocchi, G., Vaselli, O., Morrison, H., Sogin, M., & Fazi, S. (2022). Geochemical and microbiological profiles in hydrothermal extreme acidic environments (Pisciarelli Spring, Campi Flegrei, Italy). FEMS Microbiology Ecology. https://doi.org/10.1093/femsec/fiac088

Hirschberger, C., & Gillis, J. A. (2022). The pseudobranch of jawed vertebrates is a mandibular arch-derived gill. Development, 149(13). https://doi.org/10.1242/dev.200184

Marin, Z., Bao, Y., Bewersdorf, J., & Shribak, M. (2022). Inspired By Shinya Inoue: Quantitative Orientation-Independent Differential Interference Contrast Microscopy. Microscopy and Microanalysis, 28(S1), 1548–1549. https://doi.org/10.1017/s1431927622006225

Bruce, H., & Patel, N. (2022). The Daphnia carapace and other novel structures evolved via the cryptic persistence of serial homologs. Current Biology, 21, 1-8. https://doi.org/10.1016/j.cub.2022.06.073

Darras, H., De Souza Araujo, N., Baudry, L., Guiglielmoni, N., Lorite, P., Marbouty, M., Rodriguez, F., Arkhipova, I., Koszul, R., Flot, J.-F., & Aron, S. (2022). Chromosome-level genome assembly and annotation of two lineages of the ant Cataglyphis hispanica: Stepping stones towards genomic studies of hybridogenesis and thermal adaptation in desert ants. Peer Community Journal, 2, e40. https://doi.org/10.24072/pcjournal.140

Kumar, A., Kerr, L., Shribak, M., Oldenbourg, R., & Patel, N. (2022). Reflecting on the Past and Building the Future of Imaging at MBL: Carrying Forward Shinya Inoué’s Legacy. Microscopy and Microanalysis, 28(S1), 1554–1556. https://doi.org/10.1017/s1431927622006249

Oldenbourg, R. (2022). Elevating Polarized Light Microscopy to the Third Dimension. Microscopy and Microanalysis, 28(S1), 1550–1552. https://doi.org/10.1017/s1431927622006237

Orvis, J., Albertin, C., Shrestha, P., Chen, S., Zheng, M., Rodriguez, C., Tallon, L., Mahurkar, A., Zimin, A., Kim, M., Liu, K., Kandel, E., Fraser, C., Sossin, W., & Abrams, T. (2022). The evolution of synaptic and cognitive capacity: Insights from the nervous system transcriptome of Aplysia. Proceedings of the National Academy of Sciences of the United States of America, 119(28), e2122301119. https://doi.org/10.1073/pnas.2122301119

Zahn, N., James-Zorn, C., Ponferrada, V., Adams, D., Grzymkowski, J., Buchholz, D., Nascone-Yoder, N., Horb, M., Moody, S., Vize, P., & Zorn, A. (2022). Normal Table of Xenopus development: A new graphical resource. Development, 149(14). https://doi.org/10.1242/dev.200356

Moroishi, Y., Gui, J., Hoen, A., Morrison, H., Baker, E., Nadeau, K., Li, H., Li, Z., Madan, J., & Karagas, M. (2022). The relationship between the gut microbiome and the risk of respiratory infections among newborns. Communications Medicine, 2(1), 87. https://doi.org/10.1038/s43856-022-00152-1

Rogers, L., Van Wert, J., & Mensinger, A. (2022). Response of toadfish (Opsanus tau) utricular afferents to multimodal inputs. Journal of Neurophysiology. https://doi.org/10.1152/jn.00483.2021

Gorbsky, G. J., Daum, J. R., Sapkota, H., Summala, K., Yoshida, H., Georgescu, C., Wren, J. D., Peshkin, L., & Horb, M. E. (2022). Developing immortal cell lines from Xenopus embryos, four novel cell lines derived from Xenopus tropicalis. Open Biology, 12(7). https://doi.org/10.1098/rsob.220089

Pold, G., Kwiatkowski, B. L., Rastetter, E. B., & Sistla, S. A. (2022). Sporadic P limitation constrains microbial growth and facilitates SOM accumulation in the stoichiometrically coupled, acclimating microbe-plant-soil model. Soil Biology & Biochemistry, 165. https://doi.org/10.1016/j.soilbio.2021.108489

Schrieke, H., Maignien, L., Constancias, F., Trigodet, F., Chakloute, S., Rakotoarivony, I., Marie, A., L’Ambert, G., Makoundou, P., Pages, N., Eren, A. M., Weill, M., Sicard, M., & Reveillaud, J. (2022). The mosquito microbiome includes habitat-specific but rare symbionts. Computational and Structural Biotechnology Journal, 20, 410–420. https://doi.org/10.1016/j.csbj.2021.12.019

Thiruppathy, M., Fabian, P., Gillis, J. A., & Crump, J. G. (2022). Gill developmental program in the teleost mandibular arch. eLife, 11. https://doi.org/10.7554/eLife.78170

Tsakalakis, I., Follows, M. J., Dutkiewicz, S., Follett, C. L., & Vallino, J. J. (2022). Diel light cycles affect phytoplankton competition in the global ocean. Global Ecology and Biogeography. https://doi.org/10.1111/geb.13562

Kim, D., Buresch, K., Hanlon, R., & Kampff, A. (2022). An experimental method for evoking and characterizing dynamic color patterning of cuttlefish during prey capture. Journal of Biological Methods, 9(2), e161. https://doi.org/10.14440/jbm.2022.386

Roguet, A., Newton, R., Eren, A., & McLellan, S. (2022). Guts of the Urban Ecosystem: Microbial Ecology of Sewer Infrastructure. MSystems, e00118–e00122. https://doi.org/10.1128/msystems.00118-22

Liguori, A. (2022). Limited evidence for local adaptation to salinity and temperature variability in San Juan Island populations of the copepod Tigriopus californicus (Baker). Journal of Experimental Marine Biology and Ecology, 554. https://doi.org/10.1016/j.jembe.2022.151752

McCarthy, J., Kelly, S., VanHook, A., Marques-Souza, H., Serano, J., & Patel, N. (2022). Expression of Abdominal-B in the brine shrimp, Artemia franciscana, expands our evolutionary understanding of the crustacean abdomen. Developmental Biology. https://doi.org/10.1016/j.ydbio.2022.06.011

Moroishi, Y., Gui, J., Nadeau, K. C., Morrison, H. G., Madan, J., & Karagas, M. R. (n.d.). A prospective study of the infant gut microbiome in relation to vaccine response. Pediatric Research. https://doi.org/10.1038/s41390-022-02154-0

Tran, M. T., & Oldenbourg, R. (2022). Point spread function of the polarized light field microscope. Journal of the Optical Society of America A-Optics Image Science and Vision, 39(6), 1095–1103. https://doi.org/10.1364/JOSAA.458034

Martin, P., Moynihan, M. A., Chen, S., Woo, O. Y., Zhou, Y., Nichols, R. S., Chang, K. Y. W., Tan, A. S. Y., Chen, Y.-H., Ren, H., & Chen, M. (2022). Monsoon-driven biogeochemical dynamics in an equatorial shelf sea: Time-series observations in the Singapore Strait. Estuarine Coastal and Shelf Science, 270. https://doi.org/10.1016/j.ecss.2022.107855

Thomsen, E., Herbeck, L., Teichberg, M., Wang, D. R., Chen, S.-Q., & Jennerjahn, T. C. (2022). Species-specific phenotypic plasticity of two tropical seagrass species in response to in situ fertilisation under different trophic conditions. Estuarine, Coastal and Shelf Science, 270. https://doi.org/10.1016/j.ecss.2022.107837

Chaouni, B., Idrissi Azami, A., Essayeh, S., Arrafiqui, E., Bailal, A., Raoui, S., Amzazi, S., Twaddle, A., El Hamouti, C., Boukhatem, N., Timinouni, M., El Otmani, F., Chahboune, R., Barrijal, S., El Homani, A., Nejjari, C., Zaid, E., Hamamouch, N., Bakkali, F., Amaral-Zettler, L., Ghazal, H. (2022). Moroccan Lagoon Microbiomes. Water, 14(11), 1715. https://doi.org/10.3390/w14111715

Pattanayak, R., Underwood, R., Crowley, M. R., Crossman, D. K., Morgan, J. R., & Yacoubian, T. A. (2022). Deletion in chromosome 6 spanning alpha-synuclein and multimerin1 loci in the Rab27a/b double knockout mouse. Scientific Reports, 12(1), 9837. https://doi.org/10.1038/s41598-022-13557-8

Vanni, C., Schechter, M. S., Acinas, S. G., Barberan, A., Buttigieg, P. L., Casamayor, E. O., Delmont, T. O., Duarte, C. M., Eren, A. M., Finn, R. D., Kottmann, R., Mitchell, A., Sanchez, P., Siren, K., Steinegger, M., Gloeckner, F. O., & Fernandez-Guerra, A. (2022). Unifying the known and unknown microbial coding sequence space. ELIFE, 11. https://doi.org/10.7554/eLife.67667

Bachy, C., Wittmers, F., Muschiol, J., Hamilton, M., Henrissat, B., & Worden, A. Z. (2022). The land-sea connection: insights into the plant lineage from a green algal perspective. Annual Review Plant Biology, 73, 585–616. https://doi.org/10.1146/annurev-arplant-071921-100530

Rastetter, E., Kwiatkowski, B., Kicklighter, D., Plotkin, A., Genet, H., Nippert, J., O’Keefe, K., Perakis, S., Porder, S., Roley, S., Ruess, R., Thompson, J., Wieder, W., Wilcox, K., & Yanai, R. (2022). N and P constrain C in ecosystems under climate change: role of nutrient redistribution, accumulation, and stoichiometry. Ecological Applications, e2684. https://doi.org/10.1002/eap.2684 

Bachy, C., Sudek, L., Choi, C. J., Eckmann, C. A., Nöthig, E.-M., Metfies, K., & Worden, A. Z. (2022). Phytoplankton surveys in the Arctic Fram Strait demonstrate the tiny eukaryotic alga Micromonas and other picoprasinophytes contribute to deep sea export. Microorganisms, 10(5), 961. https://doi.org/10.3390/microorganisms10050961 

Klasek, S., Brock, M., Calder, W., Morrison, H., Weinig, C., & Maïgnien, L. (2022). Spatiotemporal heterogeneity and intragenus variability in rhizobacterial associations with Brassica rapa growth. MSystems, e00060–e00022. https://doi.org/10.1128/msystems.00060-22 

Petrosino, G., Ponte, G., Volpe, M., Zarrella, I., Ansaloni, F., Langella, C., Di Cristina, G., Finaurini, S., Russo, M., Basu, S., Musacchia, F., Ristoratore, F., Pavlinic, D., Benes, V., Ferrante, M., Albertin, C., Simakov, O., Gustincich, S., Fiorito, G., & Sanges, R. (2022). Identification of LINE retrotransposons and long non-coding RNAs expressed in the octopus brain. BMC Biology, 20(1) 116. https://doi.org/10.1186/s12915-022-01303-5 

Sanders‐DeMott, R., Eagle, M., Kroeger, K., Wang, F., Brooks, T., Suttles, J., Nick, S., Mann, A., & Tang, J. (2022). Impoundment increases methane emissions in Phragmites‐invaded coastal wetlands. Global Change Biology. https://doi.org/10.1111/gcb.16217 

Walker, S. E., & Echeverri, K. (2022). Spinal cord regeneration—The origins of progenitor cells for functional rebuilding. Current Opinion in Genetics & Development, 75, 101917. https://doi.org/10.1016/j.gde.2022.101917