Scientific Publications

As of March 27, 2023

Brady, E. B., McQuillan, M., Medeiros, A. T., Bubacco, L., Sousa, R., Lafer, E. M., & Morgan, J. R. (2023). Hsc70 rescues the synaptic vesicle trafficking defects caused by α-synuclein dimers. MicroPublication Biology. https://doi.org/10.17912/micropub.biology.000737

Kicklighter, D., Lin, T.-S., Zhang, J., Chen, M., Vörösmarty, C., Jain, A., & Melillo, J. (2023). Influence of forest infrastructure on the responses of ecosystem services to climate extremes in the Midwest and Northeast United States from 1980 to 2019. Frontiers in Environmental Science, 11, 1069451. https://doi.org/10.3389/fenvs.2023.1069451

Runde, J., Veseli, I., Fogarty, E. C., Watson, A. R., Clayssen, Q., Yosef, M., Shaiber, A., Verma, R., Quince, C., Gerasimidis, K., Rubin, D. T., & Eren, A. M. (2023). Transient Suppression of Bacterial Populations Associated with Gut Health is Critical in Success of Exclusive Enteral Nutrition for Children with Crohn’s  Disease. Journal of Crohn’s & Colitis, jjad031. https://doi.org/10.1093/ecco-jcc/jjad031

Vörösmarty, C., Melillo, J., Wuebbles, D., Jain, A., Ando, A., Chen, M., Tuler, S., Smith, R., Kicklighter, D., Corsi, F., Fekete, B., Miara, A., Bokhari, H., Chang, J., Lin, T.-S., Maxfield, N., Sanyal, S., & Zhang, J. (2023). Applying the framework to study climate-induced extremes on food, energy, and water systems (C-FEWS): The role of engineered and natural infrastructures, technology, and environmental management in the United States Northeast and Midwest. Frontiers in Environmental Science, 11, 1070144. https://doi.org/10.3389/fenvs.2023.1070144

Hamlet, C., Fauci, L., Morgan, J. R., & Tytell, E. D. (2023). Proprioceptive feedback amplification restores effective locomotion in a neuromechanical model of lampreys with spinal injuries. Proceedings of the National Academy of Sciences, 120(11), e2213302120. https://doi.org/10.1073/pnas.2213302120

Putland, R., Mooney, T., & Mensinger, A. (2023). Vessel sound causes hearing loss for hummingbird bobtail squid (Euprymna berryi). Frontiers in Marine Science, 10, 1151605. https://doi.org/10.3389/fmars.2023.1151605

Subramanian, E., Elewa, A., Brito, G., Kumar, A., Segerstolpe, Å., Karampelias, C., Björklund, Å., Sandberg, R., Echeverri, K., Lui, W.-O., Andersson, O., & Simon, A. (2023). A small noncoding RNA links ribosome recovery and translation control to dedifferentiation during salamander limb regeneration. Developmental Cell. https://doi.org/10.1016/j.devcel.2023.02.007

Torres-García, E., Pinto-Cámara, R., Linares, A., Martínez, D., Abonza, V., Brito-Alarcón, E., Calcines-Cruz, C., Valdés-Galindo, G., Torres, D., Jabloñski, M., Torres-Martínez, H. H., Martínez, J. L., Hernández, H. O., Ocelotl-Oviedo, J. P., Garcés, Y., Barchi, M., D’Antuono, R., Bošković, A., Dubrovsky, J. G., Darszon, A., Buffone, M. G., Rodriguez Morales, R., Rendon-Mancha, J. M., Wood, C. D., Hernandez-Garcia, A., Krapf, D., Crevenna, A. H., & Guerrero, A. (2022). Extending resolution within a single imaging frame. Nature Communications, 13. https://doi.org/10.1038/s41467-022-34693-9

Wang, H., Swore, J., Sharma, S., Szymanski, J. R., Yuste, R., Daniel, T. L., Regnier, M., Bosma, M. M., & Fairhall, A. L. (2023). A complete biomechanical model of Hydra contractile behaviors, from neural drive to muscle to movement. Proceedings of the National Academy of Sciences, 120(11), e2210439120. https://doi.org/10.1073/pnas.2210439120

Avram-Shperling, A., Kopel, E., Twersky, I., Gabay, O., Ben-David, A., Karako-Lampert, S., Rosenthal, J. J. C., Levanon, E. Y., Eisenberg, E., & Ben-Aroya, S. (2023). Identification of exceptionally potent adenosine deaminases RNA editors from high body temperature organisms. PLOS Genetics, 19(3), e1010661. https://doi.org/10.1371/journal.pgen.1010661

Cai, L., McGuire, N. E., Hanlon, R., Mooney, T. A., & Girdhar, Y. (2023). Semi-supervised Visual Tracking of Marine Animals Using Autonomous Underwater Vehicles. International Journal of Computer Vision. https://doi.org/10.1007/s11263-023-01762-5

Carden, L., Lloret, J., & Kidwell, S. M. (2023). Dead molluscan shells from multiple trophic groups as archives of nitrogen isotopic evidence of wastewater gradients in estuaries. Marine Pollution Bulletin, 189, 114752. https://doi.org/10.1016/j.marpolbul.2023.114752

Diaz Quiroz, J., Ojha, N., Shayhidin, E., De Silva, D., Dabney, J., Lancaster, A., Coull, J., Milstein, S., Fraley, A., Brown, C., & Rosenthal, J. (2023). Development of a selection assay for small guide RNAs that drive efficient site-directed RNA editing. Nucleic Acids Research. https://doi.org/10.1093/nar/gkad098

Parker, T. C., Unger, S. L., Moody, M. L., Tang, J., & Fetcher, N. (2022). Intraspecific variation in phenology offers resilience to climate change for Eriophorum vaginatum(1). Arctic Science, 8(3), 935–951. https://doi.org/10.1139/as-2020-0039

Rinaldi, G., Attenborough, T., Rawlinson, K., & Berriman, M. (2022). Schistosomes go single cell. Nature Reviews Microbiology, 20(12), 705–705. https://doi.org/10.1038/s41579-022-00810-0

Walker, S., Santos-Ferreira, T., & Echeverri, K. (2023). A Reproducible Spinal Cord Crush Injury in the Regeneration-Permissive Axolotl. In A. J. Udvadia & J. B. Antczak (Eds.), Axon Regeneration: Methods and Protocols (pp. 237–246). Springer US. https://doi.org/10.1007/978-1-0716-3012-9_13

Gainett, G., Klementz, B., Blaszczyk, P., Bruce, H., Patel, N., & Sharma, P. (2023). Dual functions of labial resolve the Hox logic of chelicerate head segments. Molecular Biology and Evolution. https://doi.org/10.1093/molbev/msad037

Kiefl, E., Esen, O., Miller, S., Kroll, K., Willis, A., Rappé, M., Pan, T., & Eren, A. (2023). Structure-informed microbial population genetics elucidate selective pressures that shape protein evolution. Science Advances, 9(8), eabq4632. https://doi.org/10.1126/sciadv.abq4632

Rosenthal, J. J. C., & Eisenberg, E. (2023). Extensive Recoding of the Neural Proteome in Cephalopods by RNA Editing. Annual Review of Animal Biosciences, 11(1), 57–75. https://doi.org/10.1146/annurev-animal-060322-114534

Panlilio, J. M., Hammar, K. M., Aluru, N., & Hahn, M. E. (2023). Developmental exposure to domoic acid targets reticulospinal neurons and leads to aberrant myelination in the spinal cord. Scientific Reports, 13(1), Article 1. https://doi.org/10.1038/s41598-023-28166-2

Vörösmarty, C., Melillo, J., Wuebbles, D., Jain, A., Ando, A., Chen, M., Tuler, S., Smith, R., Kicklighter, D., Corsi, F., Fekete, B., Miara, A., Bokhari, H., Chang, J., Lin, T.-S., Maxfield, N., Sanyal, S., Zhang, J., & Vignoles, D. (2023). The C-FEWS framework: Supporting studies of climate-induced extremes on food, energy, and water systems at the regional scale. Frontiers in Environmental Science, 11, 1069613. https://doi.org/10.3389/fenvs.2023.1069613

Cannon, K. S., Vargas-Muniz, J. M., Billington, N., Seim, I., Ekena, J., Sellers, J. R., & Gladfelter, A. S. (2023). A gene duplication of a septin reveals a developmentally regulated filament length control mechanism. Journal of Cell Biology, 222(3). https://doi.org/10.1083/jcb.202204063

Shi, W., Cannon, K. S., Curtis, B. N., Edelmaier, C., Gladfelter, A. S., & Nazockdast, E. (2023). Curvature sensing as an emergent property of multiscale assembly of septins. Proceedings of the National Academy of Sciences of the United States of America, 120(6), e2208253120. https://doi.org/10.1073/pnas.2208253120

Sonam, S., Bangru, S., Perry, K., Chembazhi, U., Kalsotra, A., & Henry, J. (2022). Cellular and molecular profiles of larval and adult Xenopus corneal epithelia resolved at the single-cell level. Developmental Biology. https://doi.org/10.1016/j.ydbio.2022.08.007

Garner, R. M., Molines, A. T., Theriot, J. A., & Chang, F. (2023). Vast heterogeneity in cytoplasmic diffusion rates revealed by nanorheology and Doppelgänger simulations. Biophysical Journal. https://doi.org/10.1016/j.bpj.2023.01.040

Giacomini, J. J., Torres-Morales, J., Dewhirst, F. E., Borisy, G. G., & Mark Welch, J. L. (2023). Site Specialization of Human Oral Veillonella Species. Microbiology Spectrum, e04042-22. https://doi.org/10.1128/spectrum.04042-22

Li, X., Wu, Y., Su, Y., Rey-Suarez, I., Matthaeus, C., Updegrove, T., Wei, Z., Zhang, L., Sasaki, H., Li, Y., Guo, M., Giannini, J., Vishwasrao, H., Chen, J., Lee, S.-J., Shao, L., Liu, H., Ramamurthi, K., Taraska, J., Upadhyaya, A., La Riviere, P., & Shroff, H. (2023). Three-dimensional structured illumination microscopy with enhanced axial resolution. Nature Biotechnology, 1–13. https://doi.org/10.1038/s41587-022-01651-1

Martens, K., Shribak, M., Arkhipova, I., & Schön, I. (2023). The common morphospecies Cypridopsis vidua (O.F. MÜLLER, 1776) (Crustacea, Ostracoda) is not an obligate parthenogen. Belgian Journal of Zoology, 153. https://doi.org/10.26496/bjz.2023.107

Maan, R., Reese, L., Volkov, V. A., King, M. R., van der Sluis, E. O., Andrea, N., Evers, W. H., Jakobi, A. J., & Dogterom, M. (2023). Multivalent interactions facilitate motor-dependent protein accumulation at growing microtubule plus-ends. Nature Cell Biology, 25(1), Article 1. https://doi.org/10.1038/s41556-022-01037-0 *bolded authors all affiliated with 2017 Physiology Course*

Quiroz, J., Siskel, L., & Rosenthal, J. (2023). Site-directed A→I RNA editing as a therapeutic tool: Moving beyond genetic mutations. RNA, rna.079518.122. https://doi.org/10.1261/rna.079518.122

Viana, I. G., Artika, S. R., Moreira-Saporiti, A., & Teichberg, M. (2023). Limited trait responses of a tropical seagrass to the combination of increasing pCO2 and warming. Journal of Experimental Botany, 74(1), 472–488. https://doi.org/10.1093/jxb/erac425

Truchado-García, M., Perry, K., Cavodeassi, F., Kenny, N., Henry, J., & Grande, C. (2022). A small change with a twist ending—A single residue in EGF-CFC drives Bilaterian asymmetry. Molecular Biology and Evolution. https://doi.org/10.1093/molbev/msac270

Valiela, I., Chenoweth, K., Lloret, J., Teal, J., Howes, B., & Toner, D. G. (2023). Salt marsh vegetation change during a half-century of experimental nutrient addition and climate-driven controls in Great Sippewissett Marsh. The Science of the Total Environment, 867, 161546. https://doi.org/10.1016/j.scitotenv.2023.161546

Chaouni, B., Idrissi Azami, A., Raoui, S., Amzazi, S., Nejjari, C., Bakkali, F., Zaid, E. H., Hamamouch, N., Amaral-Zettler, L., & Ghazal, H. (2023). Spatio-temporal patterns of Synechococcus oligotypes in Moroccan lagoonal environments. Scientific Reports, 13(1), Article 1. https://doi.org/10.1038/s41598-022-27263-y

Mäthger, L. (2022). How the blue-ringed octopus flashes its rings. Physics Today, 75(12), 62–63. https://doi.org/10.1063/PT.3.5146

Ardiel, E., Lauziere, A., Xu, S., Harvey, B., Christensen, R., Nurrish, S., Kaplan, J., & Shroff, H. (2022). Stereotyped behavioral maturation and rhythmic quiescence in C.elegans embryos. eLife, 11. https://doi.org/10.7554/eLife.76836

Rodriguez, F., & Arkhipova, I. (2022). An Overview of Best Practices for Transposable Element Identification, Classification, and Annotation in Eukaryotic Genomes. In Transposable Elements (Vol. 2607, pp. 1–23). Humana Press. https://doi.org/10.1007/978-1-0716-2883-6_1

Spurrell, M., Oulhen, N., Foster, S., Perillo, M., & Wessel, G. (2023). Gene regulatory divergence amongst echinoderms underlies appearance of pigment cells in sea urchin development. Developmental Biology, 494, 13–25. https://doi.org/10.1016/j.ydbio.2022.11.008

Barrett, C. J., Bensbai, J., Broadhurst, M. K., Bustamante, P., Clark, R., Cooke, G. M., Di Cosmo, A., Drerup, C., Escolar, O., Fernández-Álvarez, F. A., Ganias, K., Hall, K. C., Hanlon, R. T., Hernández-Urcera, J., Hua, Q. Q. H., Lacoue-Labarthe, T., Lewis, J., Lishchenko, F., Maselli, V., Moustahfid, H., Nakajima, R., O’Brien, C. E., Parkhouse, L., Pengelly, S., Pierce, G. J., Ramirez, J. G., Robin, J.-P., Sajikumar, K. K., Sasikumar, G., Smith, C. L., Villanueva, R., & Yến, D. T. H. (2022). Cuttlefish conservation: A global review of methods to ameliorate unwanted fishing mortality and other anthropogenic threats to sustainability. ICES Journal of Marine Science, 0, 1-18. https://doi.org/10.1093/icesjms/fsac200

Domeignoz‐Horta, L., Pold, G., Erb, H., Sebag, D., Verrecchia, E., Northen, T., Louie, K., Eloe‐Fadrosh, E., Pennacchio, C., Knorr, M., Frey, S., Melillo, J., & DeAngelis, K. (2022). Substrate availability and not thermal‐acclimation controls microbial temperature sensitivity response to long term warming. Global Change Biology. https://doi.org/10.1111/gcb.16544

Matute, J., Duan, J., Flak, M., Griebel, P., Tascon-Arcila, J., Doms, S., Hanley, T., Antanaviciute, A., Gundrum, J., Mark Welch, J. L., Sit, B., Abtahi, S., Fuhler, G., Grootjans, J., Tran, F., Stengel, S., White, J., Krupka, N., Haller, D., Clare, S., Lawley, T. D., Kaser, A., Simmons, A., Glickman, J. N., Bry, L., Rosenstiel, P., Borisy, G., Waldor, M. K., Baines, J. F., Turner, J. R., & Blumberg, R. (2022). Intelectin-1 binds and alters the localization of the mucus barrier–modifying bacterium Akkermansia muciniphila. Journal of Experimental Medicine, 220(1), e20211938. https://doi.org/10.1084/jem.20211938

Rajabi, M., Lavrentovich, O., & Shribak, M. (2022). Instantaneous mapping of liquid crystal orientation using a polychromatic polarizing microscope. Liquid Crystals. https://doi.org/10.1080/02678292.2022.2142883

Chitale, P., Lemenze, A., Fogarty, E., Shah, A., Grady, C., Odom-Mabey, A., Johnson, W., Yang, J., Eren, A., Brosch, R., Kumar, P., & Alland, D. (2022). A comprehensive update to the Mycobacterium tuberculosis H37Rv reference genome. Nature Communications, 13(1), 7068. https://doi.org/10.1038/s41467-022-34853-x

Cleary, K., Fakhri, A., Dionne, E., Warner, M., DeGiorgis, J., & Cornely, K. (2022). Mycobacteriophage Tarkin: A Cluster E Phage. Microbiology Resource Announcements, e00961–e00922. https://doi.org/10.1128/mra.00961-22

Kittelberger, J. M., Franzini-Armstrong, C., & Boncompagni, S. (2022). Ca2+ entry units in a superfast fish muscle. Frontiers in Physiology, 13. https://doi.org/10.3389/fphys.2022.1036594

DeWolf, E., Brock, M., Calder, W., Kliebenstein, D., Katz, E., Li, B., Morrison, H., Maïgnien, L., & Weinig, C. (2022). The rhizosphere microbiome and host plant glucosinolates exhibit feedback cycles in Brassica rapa. Molecular Ecology. https://doi.org/10.1111/mec.16782

Espino, C. M., Lewis, C. M., Ortiz, S., Dalal, M. S., Garlapalli, S., Wells, K. M., O’Neil, D. A., Wilkinson, K. A., & Griffith, T. N. (2022). NaV1.1 is essential for proprioceptive signaling and motor behaviors. eLife, 11, e79917. https://doi.org/10.7554/eLife.79917

Kite-Powell, H., Ask, E., Augyte, S., Bailey, D., Decker, J., Goudey, C., Grebe, G., Li, Y., Lindell, S., Manganelli, D., Marty-Rivera, M., Ng, C., Roberson, L., Stekoll, M., Umanzor, S., & Yarish, C. (2022). Estimating production cost for large-scale seaweed farms. Applied Phycology, 3(1), 435–445. https://doi.org/10.1080/26388081.2022.2111271

Niu, M., Deng, L., Su, L., Ruff, S., Yang, N., Luo, M., Qi, Q., Li, J., & Wang, F. (2022). Methane supply drives prokaryotic community assembly and network at cold seeps of the South China Sea. Molecular Ecology. https://doi.org/10.1111/mec.16786

Sterner, Z. R., Jabrah, A., Shaidani, N.-I., Horb, M. E., Dockery, R., Paul, B., & Buchholz, D. R. (2023). Development and metamorphosis in frogs deficient in the thyroid hormone transporter MCT8. General and Comparative Endocrinology, 331, 114179. https://doi.org/10.1016/j.ygcen.2022.114179