Scientific Publications

As of November 27, 2023

Beca-Carretero, P., Winters, G., Teichberg, M., Procaccini, G., Schneekloth, F., Zambrano, R. H., Chiquillo, K., & Reuters, H. (2024). Climate change and the presence of invasive species will threaten the persistence of the Mediterranean seagrass community. Science of The Total Environment, 910, 168675. https://doi.org/10.1016/j.scitotenv.2023.168675

Haviland, K. A., Hayn, M., & Howarth, R. W. (2023). Lab-based multispectral photography for approximating chlorophyll content in Zostera marina. Limnology and Oceanography: Methods. https://doi.org/10.1002/lom3.10589

Hehenberger, E., Guo, J., Wilken, S., Hoadley, K., Sudek, L., Poirier, C., Dannebaum, R., Susko, E., & Worden, A. Z. (2023). Phosphate limitation responses in marine green algae are linked to reprogramming of the tRNA epitranscriptome and codon usage bias. Molecular Biology and Evolution, msad251. https://doi.org/10.1093/molbev/msad251

Zheng, J., Mallon, J., Lammers, A., Rados, T., Litschel, T., Moody, E. R. R., Ramirez-Diaz, D. A., Schmid, A., Williams, T. A., Bisson-Filho, A. W., & Garner, E. (2023). Salactin, a dynamically unstable actin homolog in Haloarchaea. mBio, e02272-23. https://doi.org/10.1128/mbio.02272-23  *ARTC*

Thayer, R., & Patel, N. (2023). A meta-analysis of butterfly structural colors: Their color range, distribution and biological production. Journal of Experimental Biology, 226(21). https://doi.org/10.1242/jeb.245940

Wei, H., Xu, X., Savoie, A., Schattle, E., Hardison, A., Erdner, D., & McClelland, J. (2023). Seasonal and nutrient controls on phytoplankton in the Aransas River tidal freshwater zone, Texas, USA. Hydrobiologia. https://doi.org/10.1007/s10750-023-05388-z

Zammit, M., Kao, C.-M., Zhang, H., Tsai, H.-M., Holderman, N., Mitchell, S., Tanios, E., Bhuiyan, M., Freifelder, R., Kucharski, A., Green, W., Mukherjee, J., & Chen, C.-T. (2023). Evaluation of an Image-Derived Input Function for Kinetic Modeling of Nicotinic Acetylcholine Receptor-Binding PET Ligands in Mice. International Journal of Molecular Sciences, 24(21), 15510. https://doi.org/10.3390/ijms242115510

Albertin, C. B., & Katz, P. S. (2023). Evolution of cephalopod nervous systems. Current Biology, 33(20), R1087–R1091. https://doi.org/10.1016/j.cub.2023.08.092

Marino, R., Hayn, M., Howarth, R. W., Giblin, A. E., McGlathery, K. J., & Berg, P. (2023). Nitrogen fixation associated with epiphytes on the seagrass Zostera marina in a temperate lagoon with moderate to high nitrogen loads. Biogeochemistry. https://doi.org/10.1007/s10533-023-01083-2

Pérez Castro, S., Peredo, E., Mason, O., Vineis, J., Bowen, J., Mortazavi, B., Ganesh, A., Ruff, S., Paul, B., Giblin, A., & Cardon, Z. (2023). Diversity at single nucleotide to pangenome scales among sulfur cycling bacteria in salt marshes. Applied and Environmental Microbiology, e0098823. https://doi.org/10.1128/aem.00988-23

Bowen, J. L., Spivak, A. C., Bernhard, A. E., Fulweiler, R. W., & Giblin, A. E. (2023). Salt marsh nitrogen cycling: Where land meets sea. Trends in Microbiology. https://doi.org/10.1016/j.tim.2023.09.010

Chancellor, S., Grasse, B., Sakmar, T., Scheel, D., Brown, J. S., & Santymire, R. M. (2023). Exploring the Effect of Age on the Reproductive and Stress Physiology of Octopus bimaculoides Using Dermal Hormones. Animals, 13(19), 3115. https://doi.org/10.3390/ani13193115

König, S., Schmidt, N., Bechberger, K., Morris, S., Priego, M., Zaky, H., Song, Y., Pielage, J., Brunholz, S., Brady, S. T., Kins, S., & Morfini, G. (2023). Axon-Autonomous Effects of the Amyloid Precursor Protein Intracellular Domain (AICD) on Kinase Signaling and Fast Axonal Transport. Cells, 12(19). https://doi.org/10.3390/cells12192403

Ruff, S., & Baker, B. (2023). Editorial: Rising stars in hydrothermal vents and cold seeps: 2021. Frontiers in Microbiology, 14, 1297372. https://doi.org/10.3389/fmicb.2023.1297372

Strauss, J., Deng, L., Gao, S., Toseland, A., Bachy, C., Zhang, C., Kirkham, A., Hopes, A., Utting, R., Joest, E. F., Tagliabue, A., Löw, C., Worden, A. Z., Nagel, G., & Mock, T. (2023). Plastid-localized xanthorhodopsin increases diatom biomass and ecosystem productivity in iron-limited surface oceans. Nature Microbiology. https://doi.org/10.1038/s41564-023-01498-5

Wu-Woods, N. J., Barlow, J. T., Trigodet, F., Shaw, D. G., Romano, A. E., Jabri, B., Eren, A. M., & Ismagilov, R. F. (2023). Microbial-enrichment method enables high-throughput metagenomic characterization from host-rich samples. Nature Methods. https://doi.org/10.1038/s41592-023-02025-4

Cauret, C. M. S., Jordan, D. C., Kukoly, L. M., Burton, S. R., Anele, E. U., Kwiecien, J. M., Gansauge, M.-T., Senthillmohan, S., Greenbaum, E., Meyer, M., Horb, M. E., & Evans, B. J. (2023). Functional dissection and assembly of a small, newly evolved, W chromosome-specific genomic region of the African clawed frog Xenopus laevis. PLOS Genetics, 19(10), e1010990. https://doi.org/10.1371/journal.pgen.1010990

Chavez Ramirez, C., Khoo, M., Lopez G, M., Ferguson, S., Walker, S., & Echeverri, K. (2023). Comparison of Blastema Formation after Injury in Two Cephalopod Species. microPublication Biology. https://doi.org/10.17912/micropub.biology.000946

Galarza-Muñoz, G., Soto-Morales, S., Jiao, S., Holmgren, M., & Rosenthal, J. (2023). Molecular determinants for cold adaptation in an Antarctic Na⁺/K⁺-ATPase. Proceedings of the National Academy of Sciences of the United States of America, 120(41), e2301207120. https://doi.org/10.1073/pnas.2301207120

LaFountain Jr, J. R., Seaman, C. E., Cohan, C. S., & Oldenbourg, R. (2023). Sliding of antiparallel microtubules drives bipolarization of monoastral spindles. Cytoskeleton. https://doi.org/10.1002/cm.21800

Zhang, Y., Ruff, S. E., Oskolkov, N., Tierney, B. T., Ryon, K., Danko, D., Mason, C. E., & Elhaik, E. (2023). The microbial biodiversity at the archeological site of Tel Megiddo (Israel). Frontiers in Microbiology, 14. https://www.frontiersin.org/articles/10.3389/fmicb.2023.1253371

Bachar-Wikstrom, E., Thomsson, K. A., Sihlbom, C., Abbo, L., Tartor, H., Lindén, S. K., & Wikstrom, J. D. (2023). Identification of Novel Glycans in the Mucus Layer of Shark and Skate Skin. International Journal of Molecular Sciences, 24(18). https://doi.org/10.3390/ijms241814331

Anthonies, S., & Vargas-Muñiz, J. M. (2022). Hortaea werneckii isolates exhibit different pathogenic potential in the invertebrate infection model Galleria mellonella. Frontiers in Fungal Biology, 3. https://www.frontiersin.org/articles/10.3389/ffunb.2022.941691

Moon, T., Thoman, R., Druckenmiller, M., Ahmasuk, B., Backensto, S., Ballinger, T., Benestad, R., Berner, L., Bernhard, G., Bhatt, U., Bigalke, S., BjerkeJarle, W., Brettschneider, B., Christiansen, H., Cohen, J., Decharme, B., Derksen, C., Divine, D., Drost, J., Druckenmiller, M. L., EliasChereque, A., Epstein, H. E., Fausto, R. S., Fettweis, X., Fioletov, V. E., Forbes, B. C., Frost, G. V., Gerland, S., Goetz, S. J., Grooß, J.-U., Hanna, E., Hanssen-Bauer, I., Hendricks, S., Holmes, R. M., Ialongo, I., Isaksen, K., Johnsen, B., Jones, T., Kaler, R. S. A., Kaleschke, L., Kim, S.-J., Labe, Z. M., Lader, R., Lakkala, K., Lara, M. J., Lindsey, J., Loomis, B. D., Luojus, K., Macander, M. J., Mamen, J., Mankoff, K. D., Manney, G. L., McAfee, S. A., McClelland, J. W., Meier, W. N., Moon, T. A, Moore, G. W. K., Mote, T. L., Mudryk, L., Muller, R., Nyland, K. E., Overland, J. E., Parrish, J. K., Perovich, D. K., Petersen, G. N., Petty, A., Phoenix, G. K., Poinar, K., Rantanen, M., Ricker, R., Romanovsky, V. E., Serbin, S. P., Serreze, M. C., Sheffield, G., Shiklomanov, A. I., Shiklomanov, N. I., Smith, S. L., Spencer, R. G. M., Streletskiy, D. A., Suslova, A., Svendby, T., Tank, S. E., Tedesco, M., Thoman, R. L., Tian-Kunze, X., Timmermans, M.-L., Tommervik, H., Tretiakov, M., Walker, D. A., Walsh, J. E., Wang, M., Webster, M., Wehrle, A., Yang, D., Zolkos, S., Allen, J., Camper, A. V., Haley, B. O., Hammer, G., Love-Brotak, S., Ohlmann, L., Noguchi, L., Riddle, D. B., & Veasey, S. (2023). “The Arctic” in State of the Climate 2022. Bulletin of the American Meteorological Society, 104(9), s271–s321. https://doi.org/10.1175/bams-d-23-0079.1

Peña-Montenegro, T. D., Kleindienst, S., Allen, A. E., Eren, A. M., McCrow, J. P., Sánchez-Calderón, J. D., Arnold, J., & Joye, S. B. (2023). Species-specific responses of marine bacteria to environmental perturbation. ISME Communications, 3. https://doi.org/10.1038/s43705-023-00310-z

Tarrés, M., Cerdà-Domènech, M., Pedrosa-Pàmies, R., Baza-Varas, A., Calafat, A., Sanchez-Vidal, A., & Canals, M. (2023). Transport and distributions of naturally and anthropogenically sourced trace metals and Arsenic in submarine canyons. Progress In Oceanography, 218, 103122. https://doi.org/10.1016/j.pocean.2023.103122

Baker, J. L., Mark Welch, J. L., Kauffman, K. M., McLean, J. S., & He, X. (2023). The oral microbiome: Diversity, biogeography and human health. Nature Reviews Microbiology, 1–16. https://doi.org/10.1038/s41579-023-00963-6

Guimond, J. A., Demir, C., Kurylyk, B. L., Walvoord, M. A., McClelland, J. W., & Cardenas, M. B. (2023). Wind-modulated groundwater discharge along a microtidal Arctic coastline. Environmental Research Letters, 18(9), 094042. https://doi.org/10.1088/1748-9326/acf0d8

Lee, J. S., Lowell, J. L., Whitewater, K., Roane, T. M., Miller, C. S., Chan, A. P., Sylvester, A. W., Jackson, D., & Hunter, L. E. (2023). Monitoring environmental microbiomes: Alignment of microbiology and computational biology competencies within a culturally integrated curriculum and research framework. Molecular Ecology Resources. https://doi.org/10.1111/1755-0998.13867

Massoud, E., Hoffman, F., Shi, Z., Tang, J., Alhajjar, E., Barnes, M., Braghiere, R., Cardon, Z., Collier, N., Crompton, O., Dennedy-Frank, P., Gautam, S., Gonzalez-Meler, M., Green, J., Koven, C., Levine, P., MacBean, N., Mao, J., Mills, R., Mishra, U., Mudunuru, M., Renchon, A. A., Scott, S., Siirila-Woodburn, E. R., Sprenger, M., Tague, C., Wang, Y., Xu, C., & Zarakas, C. (2023). Perspectives on Artificial Intelligence for Predictions in Ecohydrology. Artificial Intelligence for the Earth Systems. https://doi.org/10.1175/aies-d-23-0005.1

Plummer, A., Freilich, M., Benzi, R., Choi, C., Sudek, L., Worden, A., Toschi, F., & Mahadevan, A. (2023). Oceanic frontal divergence alters phytoplankton competition and distribution. Journal of Geophysical Research - Oceans, e2023JC019902. https://doi.org/10.1029/2023jc019902

Rastetter, E. B., Griffin, K. L., Kwiatkowski, B. L., & Kling, G. W. (2023). Ecosystem feedbacks constrain the effect of day-to-day weather variability on land–atmosphere carbon exchange. Global Change Biology. https://doi.org/10.1111/gcb.16926

Strock, S., Costello, J. H., Daniels, J., Katija, K., & Colin, S. P. (2023). Nectophore coordination and kinematics by physonect siphonophores. Journal of Experimental Biology, jeb.245955. https://doi.org/10.1242/jeb.245955

Tank, S. E., McClelland, J. W., Spencer, R. G. M., Shiklomanov, A. I., Suslova, A., Moatar, F., Amon, R. M. W., Cooper, L. W., Elias, G., Gordeev, V. V., Guay, C., Gurtovaya, T. Yu., Kosmenko, L. S., Mutter, E. A., Peterson, B. J., Peucker-Ehrenbrink, B., Raymond, P. A., Schuster, P. F., Scott, L., Staples, R., Striegl, R. G., Tretiakov, M., Zhulidov, A. V., Zimov, N., Zimov, S., & Holmes, R. M. (2023). Recent trends in the chemistry of major northern rivers signal widespread Arctic change. Nature Geoscience, 16, 789-796. https://doi.org/10.1038/s41561-023-01247-7

Brady, S. T., Mesnard-Hoaglin, N. A., Priego, M., Dziechciowska, J., Morris, S., Kang, M., Tsai, M. Y., Purks, J. L., Klein, A., Gaona, A., Melloni, A., Connors, T., Hyman, B., Song, Y., & Morfini, G. A. (2023). Toxic effects of mutant huntingtin in axons are mediated by its proline-rich domain. Brain, awad280. https://doi.org/10.1093/brain/awad280

Clark, J., Mannino, A., Spencer, R., Tank, S., & McClelland, J. (2023). Quantification of Discharge‐Specific Effects on Dissolved Organic Matter Export From Major Arctic Rivers From 1982 Through 2019. Global Biogeochemical Cycles, 37(8), e2023GB007854. https://doi.org/10.1029/2023gb007854

Fakhri, A. M., Warner, M. H., DeGiorgis, J. A., & Cornely, K. (2023). Mycobacteriophage Rita: A cluster F1 phage discovered in North Easton, Massachusetts. Microbiology Resource Announcements, e00510-23. https://doi.org/10.1128/MRA.00510-23

Amaral-Zettler, L. (2023). Algae. In Encyclopedia of Astrobiology (pp. 81–83). Springer Nature. https://doi.org/10.1007/978-3-662-65093-6_48

Van Bruggen, S., Jarrot, P.-A., Thomas, E., Sheehy, C. E., Silva, C. M. S., Hsu, A. Y., Cunin, P., Nigrovic, P. A., Gomes, E. R., Luo, H. R., Waterman, C. M., & Wagner, D. D. (2023). NLRP3 is essential for neutrophil polarization and chemotaxis in response to leukotriene B4 gradient. Proceedings of the National Academy of Sciences, 120(35), e2303814120. https://doi.org/10.1073/pnas.2303814120

Gillis, J. A. (2023). Scales, scutes, and embryonic origins of the vertebrate dermal skeleton. Proceedings of the National Academy of Sciences, 120(33), e2310552120. https://doi.org/10.1073/pnas.2310552120

Maienschein, J. (2023). Garland Allen’s Last Book Project. Journal of the History of Biology. https://doi.org/10.1007/s10739-023-09726-8

Neher, W., Rasmussen, C., Braybrook, S., Lažetić, V., Stowers, C., Mooney, P., Sylvester, A., & Springer, P. (2023). The maize preligule band is subdivided into distinct domains with contrasting cellular properties prior to ligule outgrowth. Development. https://doi.org/10.1242/dev.201608

Rand, D. M., Nunez, J. C. B., Williams, S., Rong, S., Burley, J. T., Neil, K. B., Spierer, A. N., McKerrow, W., Johnson, D. S., Raynes, Y., Fayton, T. J., Skvir, N., Ferranti, D. A., Zeff, M. G., Lyons, A., Okami, N., Morgan, D. M., Kinney, K., Brown, B. R. P., Giblin, A. E., & Cardon, Z. G. (2023). Parasite manipulation of host phenotypes inferred from transcriptional analyses in a trematode-amphipod system. Molecular Ecology. https://doi.org/10.1111/mec.17093

Saffer, A. M., Baskin, T. I., Verma, A., Stanislas, T., Oldenbourg, R., & Irish, V. F. (2023). Cellulose assembles into helical bundles of uniform handedness in cell walls with abnormal pectin composition. The Plant Journal. https://doi.org/10.1111/tpj.16414

Schön, I., Fontaneto, D., & Peredo, E. (2023). Microbiomes of aquatic animals. Hydrobiologia. https://doi.org/10.1007/s10750-023-05328-x

Voss, G., & Rosenthal, J. J. C. (2023). High-level RNA editing diversifies the coleoid cephalopod brain proteome. Briefings in Functional Genomics, elad034. https://doi.org/10.1093/bfgp/elad034

Amaral-Zettler, L. (2023). Eukarya. In M. Gargaud, W. M. Irvine, R. Amils, P. Claeys, H. J. Cleaves, M. Gerin, D. Rouan, T. Spohn, S. Tirard, & M. Viso (Eds.), Encyclopedia of Astrobiology (pp. 931–934). Springer. https://doi.org/10.1007/978-3-662-65093-6_537

Jones, I., Schumm, M., Stanley, J., Hanlon, R., & Mooney, T. (2023). Longfin squid reproductive behaviours and spawning withstand wind farm pile driving noise. ICES Journal of Marine Science. https://doi.org/10.1093/icesjms/fsad117

Matrishin, C., Haase, E., Dewhirst, F., Mark Welch, J., Miranda-Sanchez, F., Chen, T., MacFarland, D., & Kauffman, K. (2023). Phages are unrecognized players in the ecology of the oral pathogen Porphyromonas gingivalis. Microbiome, 11. https://doi.org/10.1186/s40168-023-01607-w

Vargas, K. J., Colosi, P. L., Girardi, E., Park, J.-M., Harmon, L. E., & Chandra, S. S. (2023). α-Synuclein colocalizes with AP180 and affects the size of clathrin lattices. Journal of Biological Chemistry, 105091. https://doi.org/10.1016/j.jbc.2023.105091