Scientific Publications | Marine Biological Laboratory

As of November 21, 2022

The people behind the papers – Douglas Houston and Marko Horb. (2022). Development, 149(17), dev201215. https://doi.org/10.1242/dev.201215

Li, Y., Su, Y., Guo, M., Han, X., Liu, J., Vishwasrao, H. D., Li, X., Christensen, R., Sengupta, T., Moyle, M. W., Rey-Suarez, I., Chen, J., Upadhyaya, A., Usdin, T. B., Colón-Ramos, D. A., Liu, H., Wu, Y., & Shroff, H. (2022). Incorporating the image formation process into deep learning improves network performance. Nature Methods, 19, 1427-1437. https://doi.org/10.1038/s41592-022-01652-7

Sun, S., & Brecht, M. (2022). Relative enlargement of the medial preoptic nucleus in the Etruscan shrew, the smallest torpid mammal. Scientific Reports, 12, 18602. https://doi.org/10.1038/s41598-022-22320-y

Beca-Carretero, P., Azcarate-Garcia, T., Teichberg, M., Patra, P., Feroze, F., Gonzalez, M. J., Medina, I., & Winters, G. (2022). Predicted warming intensifies the negative effects of nutrient increase on tropical seagrass: A physiological and fatty acid approach. Ecological Indicators, 142, 109184. https://doi.org/10.1016/j.ecolind.2022.109184

Carey, J., Kroeger, K., & Tang, J. (2022). Higher Temperature Sensitivity of Ecosystem Respiration in Low Marsh Compared to High Elevation Marsh Ecosystems. Journal of Geophysical Research Biogeosciences. https://doi.org/10.1029/2022jg006832

Ma, T., Parker, T., Fetcher, N., Unger, S. L., Gewirtzman, J., Moody, M. L., & Tang, J. (2022). Leaf and root phenology and biomass of Eriophorum vaginatum in response to warming in the Arctic. Journal of Plant Ecology, 15(5), 1091–1105. https://doi.org/10.1093/jpe/rtac010

Kaushal, N., Tanzil, J. T., I., Zhou, Y., Ong, M. R., Goodkin, N. F., & Martin, P. (2022). Environmental Calibration of Coral Luminescence as a Proxy for Terrigenous Dissolved Organic Carbon Concentration in Tropical Coastal Oceans. Geochemistry, Geophysics, Geosystems, 23(10), e2022GC010529. https://doi.org/10.1029/2022GC010529

Sami, A. B., & Gatlin, J. C. (2022). Dynein-dependent collection of membranes defines the architecture and position of microtubule asters in isolated, geometrically confined volumes of cell-free extracts. Molecular Biology of the Cell. https://doi.org/10.1091/mbc.E22-03-0074

Shindyapina, A., V., Cho, Y., Kaya, A., Tyshkovskiy, A., Castro, J. P., Deik, A., Gordevicius, J., Poganik, J. R., Clish, C. B., Horvath, S., Peshkin, L., & Gladyshev, V. N. (2022). Rapamycin treatment during development extends life span and health span of male mice and Daphnia magna. Science Advances, 8(37). https://doi.org/10.1126/sciadv.abo5482

Harris, L. G., Shure, A., Kuzirian, A., Gosliner, T. M., & Donodoo, S. A. (2022). A European nudibranch new to the Gulf of Maine: Doris pseudoargus Rapp, 1827. Biological Invasions. https://doi.org/10.1007/s10530-022-02917-0

Smith, J. J., Kenny, I. W., Wolff, C., Cray, R., Kumar, A., Sherwood, D. R., & Matus, D. Q. (2022). A light sheet fluorescence microscopy protocol for Caenorhabditis elegans larvae and adults. Frontiers in Cell and Developmental Biology, 10. https://www.frontiersin.org/articles/10.3389/fcell.2022.1012820

Avila, C., Bunuel, X., Carmona, F., Cotado, A., Sacristan-Soriano, O., & Angulo-Preckler, C. (2022). Would Antarctic Marine Benthos Survive Alien Species Invasions? What Chemical Ecology May Tell Us. Marine Drugs, 20(9), 543. https://doi.org/10.3390/md20090543

Cordeiro, M., Costello, J., Gemmell, B., Sutherland, K., & Colin, S. (2022). Oceanic lobate ctenophores possess feeding mechanics similar to the impactful coastal species Mnemiopsis leidyi. Limnology and Oceanography. https://doi.org/10.1002/lno.12232

Echeverri, K. (2022). Zebrafishing for enhancers of hearing regeneration. Cell Genomics, 2(9), 100178. https://doi.org/10.1016/j.xgen.2022.100178

Eugster, W., DelSontro, T., Laundre, J., Dobkowski, J., Shaver, G., & Kling, G. (2022). Effects of long-term climate trends on the methane and CO₂ exchange processes of Toolik Lake, Alaska. Frontiers in Environmental Science, 10, 948529. https://doi.org/10.3389/fenvs.2022.948529

McLean, A., Torres‐Morales, J., Dewhirst, F., Borisy, G., & Welch, J. (2022). Site‐tropism of streptococci in the oral microbiome. Molecular Oral Microbiology. https://doi.org/10.1111/omi.12387

Conte, M., Pàmies, R., Honda, M., & Herndl, G. (2022). Editorial: The oceanic particle flux and its cycling within the deep water column. Frontiers in Earth Science, 10, 1020065. https://doi.org/10.3389/feart.2022.1020065

Rhodes, H. J., & Amo, M. (2022). Electrophysiological responses to conspecific odorants in Xenopus laevis show potential for chemical signaling. PLOS ONE, 17(9), e0273035. https://doi.org/10.1371/journal.pone.0273035

Worliczek, H. L. (2022). “How Many Individuals Consider Themselves to Be Cell Biologists but Are Informed by the Journal That Their Work Is Not Cell Biology”. Berichte Zur Wissenschaftsgeschichte, 45(3), 344–354. https://doi.org/10.1002/bewi.202200019

Lloret, J., Valva, C., Valiela, I., Rheuban, J., Jakuba, R. W., Hanacek, D., Chenoweth, K., & Elmstrom, E. (2022). Decadal trajectories of land-sea couplings: Nitrogen loads and interception in New England watersheds, discharges to estuaries, and water quality effects. Estuarine, Coastal and Shelf Science, 277, 108057. https://doi.org/10.1016/j.ecss.2022.108057

Morillo-Lopez, V., Sjaarda, A., Islam, I., Borisy, G., & Mark Welch, J. (2022). Corncob structures in dental plaque reveal microhabitat taxon specificity. Microbiome, 10(1). https://doi.org/10.1186/s40168-022-01323-x

You, Y., Tian, H., Pan, S., Shi, H., Bian, Z., Gurgel, A., Huang, Y., Kicklighter, D., Liang, X.-Z., Lu, C., Melillo, J., Miao, R., Pan, N., Reilly, J., Ren, W., Xu, R., Yang, J., Yu, Q., & Zhang, J. (2022). Incorporating dynamic crop growth processes and management practices into a terrestrial biosphere model for simulating crop production in the United States: Toward a unified modeling framework. Agricultural and Forest Meteorology, 325, 109144. https://doi.org/10.1016/j.agrformet.2022.109144

Hudson, A., Peters, D., Blair, J., Childers, D., Doran, P., Geil, K., Gooseff, M., Gross, K., Haddad, N., Pastore, M., Rudgers, J., Sala, O., Seabloom, E., & Shaver, G. (2022). Cross-Site Comparisons of Dryland Ecosystem Response to Climate Change in the US Long-Term Ecological Research Network. BioScience. https://doi.org/10.1093/biosci/biab134

Lovas, J. R., & Yuste, R. (2022). Dissociation and reaggregation of Hydra vulgaris for studies of self-organization. STAR Protocols, 3(3), 101504. https://doi.org/10.1016/j.xpro.2022.101504

Wittmers, F., Needham, D. M., Hehenberger, E., Giovannoni, S. J., & Worden, A. Z. (2022). Genomes from Uncultivated Pelagiphages Reveal Multiple Phylogenetic Clades Exhibiting Extensive Auxiliary Metabolic Genes and Cross-Family Multigene Transfers. mSystems. https://doi.org/10.1128/msystems.01522-21

Zhang, H., Zammit, M., Kao, C.-M., Govind, A., Mitchell, S., Holderman, N., Bhuiyan, M., Freifelder, R., Zhuang, X., Mukherjee, J., Chen, C.-T., & Green, W. (2022). Trapping of Nicotinic Acetylcholine Receptor Ligands Assayed by in vitro Cellular Studies and in vivo PET Imaging. Journal of Neuroscience, jn-rm-2484-21. https://doi.org/10.1523/jneurosci.2484-21.2022

Houston, D., Elliott, K., Coppenrath, K., Wlizla, M., & Horb, M. (2022). Maternal Wnt11b regulates cortical rotation during Xenopus axis formation: Analysis of maternal-effect wnt11b mutants. Development. https://doi.org/10.1242/dev.200552

Miranda, K., Weigel, B., Fogarty, E., Veseli, I., Giblin, A., Eren, A., & Pfister, C. (2022). The Diversity and Functional Capacity of Microbes Associated with Coastal Macrophytes. mSystems, e0059222. https://doi.org/10.1128/msystems.00592-22

Parkinson, R. H., Fecher, C., & Gray, J. R. (2022). Chronic exposure to insecticides impairs honeybee optomotor behaviour. Frontiers in Insect Science, 2. https://www.frontiersin.org/articles/10.3389/finsc.2022.936826

Paul, B., Yushenova, I., & Arkhipova, I. (2022). The Diversity of Reverse Transcriptases. In Retrotransposons and Human Disease (pp. 1–28). https://doi.org/10.1142/9789811249228_0001

Drinkwater, E., Allen, W., Endler, J., Hanlon, R., Holmes, G., Homziak, N., Kang, C., Leavell, B., Lehtonen, J., Loeffler‐Henry, K., Ratcliffe, J., Rowe, C., Ruxton, G., Sherratt, T., Skelhorn, J., Skojec, C., Smart, H., White, T., Yack, J., Young, C. M., & Umbers, K. D. L. (2022). A synthesis of deimatic behaviour. Biological Reviews. https://doi.org/10.1111/brv.12891

Eagle, M., Kroeger, K., Spivak, A., Wang, F., Tang, J., Abdul-Aziz, O., Ishtiaq, K., O’Keefe Suttles, J., & Mann, A. (2022). Soil carbon consequences of historic hydrologic impairment and recent restoration in coastal wetlands. The Science of The Total Environment, 848, 157682. https://doi.org/10.1016/j.scitotenv.2022.157682

Simona, C., Venturi, S., Tassi, F., Simona, R., Cabassi, J., Capecchiacci, F., Bicocchi, G., Vaselli, O., Morrison, H., Sogin, M., & Fazi, S. (2022). Geochemical and microbiological profiles in hydrothermal extreme acidic environments (Pisciarelli Spring, Campi Flegrei, Italy). FEMS Microbiology Ecology. https://doi.org/10.1093/femsec/fiac088

Hirschberger, C., & Gillis, J. A. (2022). The pseudobranch of jawed vertebrates is a mandibular arch-derived gill. Development, 149(13). https://doi.org/10.1242/dev.200184

Marin, Z., Bao, Y., Bewersdorf, J., & Shribak, M. (2022). Inspired By Shinya Inoue: Quantitative Orientation-Independent Differential Interference Contrast Microscopy. Microscopy and Microanalysis, 28(S1), 1548–1549. https://doi.org/10.1017/s1431927622006225

Bruce, H., & Patel, N. (2022). The Daphnia carapace and other novel structures evolved via the cryptic persistence of serial homologs. Current Biology, 21, 1-8. https://doi.org/10.1016/j.cub.2022.06.073

Darras, H., De Souza Araujo, N., Baudry, L., Guiglielmoni, N., Lorite, P., Marbouty, M., Rodriguez, F., Arkhipova, I., Koszul, R., Flot, J.-F., & Aron, S. (2022). Chromosome-level genome assembly and annotation of two lineages of the ant Cataglyphis hispanica: Stepping stones towards genomic studies of hybridogenesis and thermal adaptation in desert ants. Peer Community Journal, 2, e40. https://doi.org/10.24072/pcjournal.140

Kumar, A., Kerr, L., Shribak, M., Oldenbourg, R., & Patel, N. (2022). Reflecting on the Past and Building the Future of Imaging at MBL: Carrying Forward Shinya Inoué’s Legacy. Microscopy and Microanalysis, 28(S1), 1554–1556. https://doi.org/10.1017/s1431927622006249

Oldenbourg, R. (2022). Elevating Polarized Light Microscopy to the Third Dimension. Microscopy and Microanalysis, 28(S1), 1550–1552. https://doi.org/10.1017/s1431927622006237

Orvis, J., Albertin, C., Shrestha, P., Chen, S., Zheng, M., Rodriguez, C., Tallon, L., Mahurkar, A., Zimin, A., Kim, M., Liu, K., Kandel, E., Fraser, C., Sossin, W., & Abrams, T. (2022). The evolution of synaptic and cognitive capacity: Insights from the nervous system transcriptome of Aplysia. Proceedings of the National Academy of Sciences of the United States of America, 119(28), e2122301119. https://doi.org/10.1073/pnas.2122301119

Zahn, N., James-Zorn, C., Ponferrada, V., Adams, D., Grzymkowski, J., Buchholz, D., Nascone-Yoder, N., Horb, M., Moody, S., Vize, P., & Zorn, A. (2022). Normal Table of Xenopus development: A new graphical resource. Development, 149(14). https://doi.org/10.1242/dev.200356

Moroishi, Y., Gui, J., Hoen, A., Morrison, H., Baker, E., Nadeau, K., Li, H., Li, Z., Madan, J., & Karagas, M. (2022). The relationship between the gut microbiome and the risk of respiratory infections among newborns. Communications Medicine, 2(1), 87. https://doi.org/10.1038/s43856-022-00152-1

Rogers, L., Van Wert, J., & Mensinger, A. (2022). Response of toadfish (Opsanus tau) utricular afferents to multimodal inputs. Journal of Neurophysiology. https://doi.org/10.1152/jn.00483.2021

Gorbsky, G. J., Daum, J. R., Sapkota, H., Summala, K., Yoshida, H., Georgescu, C., Wren, J. D., Peshkin, L., & Horb, M. E. (2022). Developing immortal cell lines from Xenopus embryos, four novel cell lines derived from Xenopus tropicalis. Open Biology, 12(7). https://doi.org/10.1098/rsob.220089

Pold, G., Kwiatkowski, B. L., Rastetter, E. B., & Sistla, S. A. (2022). Sporadic P limitation constrains microbial growth and facilitates SOM accumulation in the stoichiometrically coupled, acclimating microbe-plant-soil model. Soil Biology & Biochemistry, 165. https://doi.org/10.1016/j.soilbio.2021.108489

Schrieke, H., Maignien, L., Constancias, F., Trigodet, F., Chakloute, S., Rakotoarivony, I., Marie, A., L’Ambert, G., Makoundou, P., Pages, N., Eren, A. M., Weill, M., Sicard, M., & Reveillaud, J. (2022). The mosquito microbiome includes habitat-specific but rare symbionts. Computational and Structural Biotechnology Journal, 20, 410–420. https://doi.org/10.1016/j.csbj.2021.12.019

Thiruppathy, M., Fabian, P., Gillis, J. A., & Crump, J. G. (2022). Gill developmental program in the teleost mandibular arch. eLife, 11. https://doi.org/10.7554/eLife.78170

Tsakalakis, I., Follows, M. J., Dutkiewicz, S., Follett, C. L., & Vallino, J. J. (2022). Diel light cycles affect phytoplankton competition in the global ocean. Global Ecology and Biogeography. https://doi.org/10.1111/geb.13562

Kim, D., Buresch, K., Hanlon, R., & Kampff, A. (2022). An experimental method for evoking and characterizing dynamic color patterning of cuttlefish during prey capture. Journal of Biological Methods, 9(2), e161. https://doi.org/10.14440/jbm.2022.386

Roguet, A., Newton, R., Eren, A., & McLellan, S. (2022). Guts of the Urban Ecosystem: Microbial Ecology of Sewer Infrastructure. MSystems, e00118–e00122. https://doi.org/10.1128/msystems.00118-22

Liguori, A. (2022). Limited evidence for local adaptation to salinity and temperature variability in San Juan Island populations of the copepod Tigriopus californicus (Baker). Journal of Experimental Marine Biology and Ecology, 554. https://doi.org/10.1016/j.jembe.2022.151752

McCarthy, J., Kelly, S., VanHook, A., Marques-Souza, H., Serano, J., & Patel, N. (2022). Expression of Abdominal-B in the brine shrimp, Artemia franciscana, expands our evolutionary understanding of the crustacean abdomen. Developmental Biology. https://doi.org/10.1016/j.ydbio.2022.06.011

Moroishi, Y., Gui, J., Nadeau, K. C., Morrison, H. G., Madan, J., & Karagas, M. R. (n.d.). A prospective study of the infant gut microbiome in relation to vaccine response. Pediatric Research. https://doi.org/10.1038/s41390-022-02154-0