Recent Scientific Publications

As of February 26, 2024

Bao, Y., Marin, Z., Zhang, C., Neugebauer, K., Baddeley, D., Shribak, M., & Bewersdorf, J. (2024). A correlative quantitative phase contrast and fluorescence super-resolution microscope for imaging molecules in their cellular context. Biophysical Journal123(3), 290a. https://doi.org/10.1016/j.bpj.2023.11.1808

MacCord, K. (2024, February). Sex Cells. Natural History132(2), 30–35.

Nakamura, M., Kyoda, T., Yoshida, H., Takebayashi-Suzuki, K., Koike, R., Takahashi, E., Moriyama, Y., Wlizla, M., Horb, M. E., & Suzuki, A. (2024). Injury-induced cooperation of InhibinβA and JunB is essential for cell proliferation in Xenopus tadpole tail regeneration. Scientific Reports14, 3679. https://doi.org/10.1038/s41598-024-54280-w

Perillo, M., Sepe, R. M., Paganos, P., Toscano, A., & Annunziata, R. (2024). Sea cucumbers: An emerging system in evo-devo. EvoDevo15(1), 3. https://doi.org/10.1186/s13227-023-00220-0

Doré, H., Eisenberg, A., Junkins, E., Leventhal, G., Ganesh, A., Cordero, O., Paul, B., Valentine, D., O’Malley, M., & Wilbanks, E. (2024). Targeted hypermutation of putative antigen sensors in multicellular bacteria. Proceedings of the National Academy of Sciences of the United States of America121(9), e2316469121. https://doi.org/10.1073/pnas.2316469121

Kwiatkowski, E. R., Rosenthal, J. J. C., & Emery, P. (2024). Clocks at sea: The genome-editing tide is rising. Trends in Genetics. https://doi.org/10.1016/j.tig.2024.01.006

Yin, C.Morita, T., & Parrish, J. Z. (2024). A cell atlas of the larval Aedes aegypti ventral nerve cord. Neural Development19(1), 2. https://doi.org/10.1186/s13064-023-00178-8 *Authors from Neurobiology course*

Gordeev, V., Pokrovsky, O., Zhulidov, A., Filippov, A., Gurtovaya, T., Holmes, R., Kosmenko, L., McClelland, J.Peterson, B., & Tank, S. (2024). Dissolved Major and Trace Elements in the Largest Eurasian Arctic Rivers: Ob, Yenisey, Lena, and Kolyma. Water16(2), 316. https://doi.org/10.3390/w16020316

Mensinger, A. (2024). So many toadfish, so little time. Journal of the Acoustical Society of America155(2), 817–825. https://doi.org/10.1121/10.0024612

Costello, J. H.Colin, S. P., Gemmell, B. J., Dabiri, J. O., & Kanso, E. A. (2024). Turning kinematics of the scyphomedusa Aurelia auritaBioinspiration & Biomimetics19(2), 026005. https://doi.org/10.1088/1748-3190/ad1db8

Vineis, J. H.Reznikoff, W. S., Antonopoulos, D. A., Koval, J., Chang, E., Fallon, B. R.Paul, B. G.Morrison, H. G., & Sogin, M. L. (2024). A novel conjugative transposon carrying an autonomously amplified plasmid. mBio, e02787-23. https://doi.org/10.1128/mbio.02787-23

Valiela, I.Lloret, J.Chenoweth, K., & Wang, Y. (2024). An example of accelerated changes in current and future ecosystem trajectories: Unexpected rapid transitions in salt marsh vegetation forced by sea level rise. Environmental Challenges, 100842. https://doi.org/10.1016/j.envc.2024.100842

You, Y., Tian, H., Pan, S., Shi, H., Lu, C., Batchelor, W., Cheng, B., Hui, D., Kicklighter, D., Liang, X., Li, X., Melillo, J., Pan, N., Prior, S., & Reilly, J. (2024). Net greenhouse gas balance in U.S. croplands: How can soils be part of the climate solution? Global Change Biology30(1), e17109. https://doi.org/10.1111/gcb.17109

Mullowney, M. W., Fiebig, A., Schnizlein, M. K., McMillin, M., Rose, A. R., Koval, J., Rubin, D., Dalal, S., Sogin, M. L., Chang, E. B., Sidebottom, A. M., & Crosson, S. (2024). Microbially catalyzed conjugation of GABA and tyramine to bile acids. Journal of Bacteriology, e00426-23. https://doi.org/10.1128/jb.00426-23

Bulseco, A. N., Murphy, A. E., Giblin, A. E.Tucker, J., Sanderman, J., & Bowen, J. L. (2023). Marsh sediments chronically exposed to nitrogen enrichment contain degraded organic matter that is less vulnerable to decomposition via nitrate reduction. Science of The Total Environment, 169681. https://doi.org/10.1016/j.scitotenv.2023.169681

Hoffmann, C., & Milovanovic, D. (2023). Dipping contacts – a novel type of contact site at the interface between membraneless organelles and membranes. Journal of Cell Science136(24), jcs261413. https://doi.org/10.1242/jcs.261413

Maienschein, J. (2023). Everett Mendelsohn at the MBL. Journal of the History of Biology. https://doi.org/10.1007/s10739-023-09754-4

Mark Welch, D., Gould, T., Olins, A., & Olins, D. (2023). The transcriptome of acute dehydration in myeloid leukemic cells. Postepy Biochemii. https://doi.org/10.18388/pb.2021_507

Trouche, B., Schauberger, C., Bouderka, F., Auguet, J.-C., Belser, C., Poulain, J., Thamdrup, B., Wincker, P., Arnaud-Haond, S., Glud, R. N., & Maignien, L. (2023). Distribution and genomic variation of ammonia-oxidizing archaea in abyssal and hadal surface sediments. ISME Communications3(1), Article 1. https://doi.org/10.1038/s43705-023-00341-6

Richardson, J., Desai, A., Thom, J., Lindgren, K., Laudon, H., Peichl, M., Nilsson, M., Campeau, A., Järveoja, J., Hawman, P., Mishra, D., Smith, D., D’Acunha, B., Knox, S., Ng, D., Johnson, M., Blackstock, J., Malone, S., Oberbauer, S., Detto, M., Wickland, K. P., Forbrich, I., Weston, N., Hung, J. K. Y., Edgar, C., Euskirchen, E. S., Bret-Harte, S., Dobkowski, J., Kling, G., Kane, E. S., Badiou, P., Bogard, M., Bohrer, G., O’Halloran, T., Ritson, J., Arias-Ortiz, A., Baldocchi, D., Oikawa, P., Shahan, J., & Matsumura, M. (2024). On the Relationship Between Aquatic CO2 Concentration and Ecosystem Fluxes in Some of the World’s Key Wetland Types. Wetlands44, 1. https://doi.org/10.1007/s13157-023-01751-x

Arkhipova, I., & Yushenova, I. (2023). To Be Mobile or Not: The Variety of Reverse Transcriptases and Their Recruitment by Host Genomes. Biochemistry (Moscow)88(11), 1754–1762. https://doi.org/10.1134/s000629792311007x

Bachar-Wikstrom, E., Dhillon, B., Gill Dhillon, N., Abbo, L., Lindén, S. K., & Wikstrom, J. D. (2023). Mass Spectrometry Analysis of Shark Skin Proteins. International Journal of Molecular Sciences24(23), Article 23. https://doi.org/10.3390/ijms242316954

Fiebig, A., Schnizlein, M. K., Pena-Rivera, S., Trigodet, F., Dubey, A. A., Hennessy, M. K., Basu, A., Pott, S., Dalal, S., Rubin, D., Sogin, M. L., Eren, A. M., Chang, E. B., & Crosson, S. (2023). Bile acid fitness determinants of a Bacteroides fragilis isolate from a human pouchitis patient. mBio, e02830-23. https://doi.org/10.1128/mbio.02830-23

Ahkami, A. H., Qafoku, O., Roose, T., Mou, Q., Lu, Y., Cardon, Z. G., Wu, Y., Chou, C., Fisher, J. B., Varga, T., Handakumbura, P., Aufrecht, J. A., Bhattacharjee, A., & Moran, J. J. (2024). Emerging sensing, imaging, and computational technologies to scale nano-to macroscale rhizosphere dynamics – Review and research perspectives. Soil Biology and Biochemistry189, 109253. https://doi.org/10.1016/j.soilbio.2023.109253

Fisher, G.Roman-Vendrell, C.Brady, E., & Morgan, J. (2023). Ɑ-synuclein alters the morphology of synaptic mitochondria in giant axons of sea lamprey. IBRO Neuroscience Reports15, s560. https://doi.org/10.1016/j.ibneur.2023.08.1107

Rees, J. M., Palmer, M. A., & Gillis, J. A. (2023). Fgf signalling is required for gill slit formation in the skate, Leucoraja erinaceaDevelopmental Biology. https://doi.org/10.1016/j.ydbio.2023.11.008

Arkhipova, I. R., Burns, K. H., Chiappinelli, K. B., Chuong, E. B., Goubert, C., Guarné, A., Larracuente, A. M., Lee, E. A., & Levin, H. L. (2023). Meeting report: Transposable elements at the crossroads of evolution, health and disease 2023. Mobile DNA14. https://doi.org/10.1186/s13100-023-00307-4

Jimenez-Guri, E., Murano, C., Paganos, P., & Arnone, M. I. (2023). PVC pellet leachates affect adult immune system and embryonic development but not reproductive capacity in the sea urchin Paracentrotus lividusMarine Pollution Bulletin. https://doi.org/10.1016/j.marpolbul.2023.115604

Wallace, J. N.Crockford, Z. C.Román-Vendrell, C., Brady, E. B.Hoffmann, C.Vargas, K. J., Potcoava, M., Wegman, M. E., Alford, S. T., Milovanovic, D., & Morgan, J. R. (2023). Excess Phosphoserine-129 α-Synuclein Induces Synaptic Vesicle Trafficking and Declustering Defects at a Vertebrate Synapse. Molecular Biology of the Cell, mbc.E23-07-0269. https://doi.org/10.1091/mbc.E23-07-0269

Beca-Carretero, P., Winters, G., Teichberg, M., Procaccini, G., Schneekloth, F., Zambrano, R. H., Chiquillo, K., & Reuters, H. (2024). Climate change and the presence of invasive species will threaten the persistence of the Mediterranean seagrass community. Science of The Total Environment910, 168675. https://doi.org/10.1016/j.scitotenv.2023.168675

Haviland, K. A., Hayn, M., & Howarth, R. W. (2023). Lab-based multispectral photography for approximating chlorophyll content in Zostera marinaLimnology and Oceanography: Methods. https://doi.org/10.1002/lom3.10589

Hehenberger, E., Guo, J., Wilken, S., Hoadley, K., Sudek, L., Poirier, C., Dannebaum, R., Susko, E., & Worden, A. Z. (2023). Phosphate limitation responses in marine green algae are linked to reprogramming of the tRNA epitranscriptome and codon usage bias. Molecular Biology and Evolution, msad251. https://doi.org/10.1093/molbev/msad251

Zheng, J., Mallon, J., Lammers, A., Rados, T., Litschel, T., Moody, E. R. R., Ramirez-Diaz, D. A., Schmid, A., Williams, T. A., Bisson-Filho, A. W., & Garner, E. (2023). Salactin, a dynamically unstable actin homolog in Haloarchaea. mBio, e02272-23. https://doi.org/10.1128/mbio.02272-23  *ARTC*

Thayer, R., & Patel, N. (2023). A meta-analysis of butterfly structural colors: Their color range, distribution and biological production. Journal of Experimental Biology226(21). https://doi.org/10.1242/jeb.245940

Wei, H., Xu, X., Savoie, A., Schattle, E., Hardison, A., Erdner, D., & McClelland, J. (2023). Seasonal and nutrient controls on phytoplankton in the Aransas River tidal freshwater zone, Texas, USA. Hydrobiologia. https://doi.org/10.1007/s10750-023-05388-z

Zammit, M., Kao, C.-M., Zhang, H., Tsai, H.-M., Holderman, N., Mitchell, S., Tanios, E., Bhuiyan, M., Freifelder, R., Kucharski, A., Green, W., Mukherjee, J., & Chen, C.-T. (2023). Evaluation of an Image-Derived Input Function for Kinetic Modeling of Nicotinic Acetylcholine Receptor-Binding PET Ligands in Mice. International Journal of Molecular Sciences24(21), 15510. https://doi.org/10.3390/ijms242115510

Albertin, C. B., & Katz, P. S. (2023). Evolution of cephalopod nervous systems. Current Biology33(20), R1087–R1091. https://doi.org/10.1016/j.cub.2023.08.092

Marino, R., Hayn, M., Howarth, R. W., Giblin, A. E., McGlathery, K. J., & Berg, P. (2023). Nitrogen fixation associated with epiphytes on the seagrass Zostera marina in a temperate lagoon with moderate to high nitrogen loads. Biogeochemistry. https://doi.org/10.1007/s10533-023-01083-2

Pérez Castro, S., Peredo, E., Mason, O., Vineis, J., Bowen, J., Mortazavi, B., Ganesh, A.Ruff, S.Paul, B.Giblin, A., & Cardon, Z. (2023). Diversity at single nucleotide to pangenome scales among sulfur cycling bacteria in salt marshes. Applied and Environmental Microbiology, e0098823. https://doi.org/10.1128/aem.00988-23

Bowen, J. L., Spivak, A. C., Bernhard, A. E., Fulweiler, R. W., & Giblin, A. E. (2023). Salt marsh nitrogen cycling: Where land meets sea. Trends in Microbiology. https://doi.org/10.1016/j.tim.2023.09.010

Chancellor, S., Grasse, B.Sakmar, T., Scheel, D., Brown, J. S., & Santymire, R. M. (2023). Exploring the Effect of Age on the Reproductive and Stress Physiology of Octopus bimaculoides Using Dermal Hormones. Animals13(19), 3115. https://doi.org/10.3390/ani13193115

König, S., Schmidt, N., Bechberger, K., Morris, S., Priego, M., Zaky, H., Song, Y., Pielage, J., Brunholz, S., Brady, S. T., Kins, S., & Morfini, G. (2023). Axon-Autonomous Effects of the Amyloid Precursor Protein Intracellular Domain (AICD) on Kinase Signaling and Fast Axonal Transport. Cells12(19). https://doi.org/10.3390/cells12192403

Ruff, S., & Baker, B. (2023). Editorial: Rising stars in hydrothermal vents and cold seeps: 2021. Frontiers in Microbiology14, 1297372. https://doi.org/10.3389/fmicb.2023.1297372

Strauss, J., Deng, L., Gao, S., Toseland, A., Bachy, C., Zhang, C., Kirkham, A., Hopes, A., Utting, R., Joest, E. F., Tagliabue, A., Löw, C., Worden, A. Z., Nagel, G., & Mock, T. (2023). Plastid-localized xanthorhodopsin increases diatom biomass and ecosystem productivity in iron-limited surface oceans. Nature Microbiology. https://doi.org/10.1038/s41564-023-01498-5

Wu-Woods, N. J., Barlow, J. T., Trigodet, F., Shaw, D. G., Romano, A. E., Jabri, B., Eren, A. M., & Ismagilov, R. F. (2023). Microbial-enrichment method enables high-throughput metagenomic characterization from host-rich samples. Nature Methods. https://doi.org/10.1038/s41592-023-02025-4

Cauret, C. M. S., Jordan, D. C., Kukoly, L. M., Burton, S. R., Anele, E. U., Kwiecien, J. M., Gansauge, M.-T., Senthillmohan, S., Greenbaum, E., Meyer, M., Horb, M. E., & Evans, B. J. (2023). Functional dissection and assembly of a small, newly evolved, W chromosome-specific genomic region of the African clawed frog Xenopus laevisPLOS Genetics19(10), e1010990. https://doi.org/10.1371/journal.pgen.1010990

Chavez Ramirez, C., Khoo, M., Lopez G, M., Ferguson, S.Walker, S., & Echeverri, K. (2023). Comparison of Blastema Formation after Injury in Two Cephalopod Species. microPublication Biology. https://doi.org/10.17912/micropub.biology.000946

Galarza-Muñoz, G., Soto-Morales, S., Jiao, S., Holmgren, M., & Rosenthal, J. (2023). Molecular determinants for cold adaptation in an Antarctic Na+/K+-ATPase. Proceedings of the National Academy of Sciences of the United States of America120(41), e2301207120. https://doi.org/10.1073/pnas.2301207120

LaFountain Jr, J. R., Seaman, C. E., Cohan, C. S., & Oldenbourg, R. (2023). Sliding of antiparallel microtubules drives bipolarization of monoastral spindles. Cytoskeleton. https://doi.org/10.1002/cm.21800

Zhang, Y., Ruff, S. E., Oskolkov, N., Tierney, B. T., Ryon, K., Danko, D., Mason, C. E., & Elhaik, E. (2023). The microbial biodiversity at the archeological site of Tel Megiddo (Israel). Frontiers in Microbiology14. https://www.frontiersin.org/articles/10.3389/fmicb.2023.1253371