Scientific Publications

As of June 20, 2022

Chaouni, B., Idrissi Azami, A., Essayeh, S., Arrafiqui, E., Bailal, A., Raoui, S., Amzazi, S., Twaddle, A., El Hamouti, C., Boukhatem, N., Timinouni, M., El Otmani, F., Chahboune, R., Barrijal, S., El Homani, A., Nejjari, C., Zaid, E., Hamamouch, N., Bakkali, F., Amaral-Zettler, L., Ghazal, H. (2022). Moroccan Lagoon Microbiomes. Water, 14(11), 1715. https://doi.org/10.3390/w14111715

Pattanayak, R., Underwood, R., Crowley, M. R., Crossman, D. K., Morgan, J. R., & Yacoubian, T. A. (2022). Deletion in chromosome 6 spanning alpha-synuclein and multimerin1 loci in the Rab27a/b double knockout mouse. Scientific Reports, 12(1), 9837. https://doi.org/10.1038/s41598-022-13557-8

Vanni, C., Schechter, M. S., Acinas, S. G., Barberan, A., Buttigieg, P. L., Casamayor, E. O., Delmont, T. O., Duarte, C. M., Eren, A. M., Finn, R. D., Kottmann, R., Mitchell, A., Sanchez, P., Siren, K., Steinegger, M., Gloeckner, F. O., & Fernandez-Guerra, A. (2022). Unifying the known and unknown microbial coding sequence space. ELIFE, 11. https://doi.org/10.7554/eLife.67667

Bachy, C., Wittmers, F., Muschiol, J., Hamilton, M., Henrissat, B., & Worden, A. Z. (2022). The land-sea connection: insights into the plant lineage from a green algal perspective. Annual Review Plant Biology, 73, 585–616. https://doi.org/10.1146/annurev-arplant-071921-100530

Rastetter, E., Kwiatkowski, B., Kicklighter, D., Plotkin, A., Genet, H., Nippert, J., O’Keefe, K., Perakis, S., Porder, S., Roley, S., Ruess, R., Thompson, J., Wieder, W., Wilcox, K., & Yanai, R. (2022). N and P constrain C in ecosystems under climate change: role of nutrient redistribution, accumulation, and stoichiometry. Ecological Applications, e2684. https://doi.org/10.1002/eap.2684 

Bachy, C., Sudek, L., Choi, C. J., Eckmann, C. A., Nöthig, E.-M., Metfies, K., & Worden, A. Z. (2022). Phytoplankton surveys in the Arctic Fram Strait demonstrate the tiny eukaryotic alga Micromonas and other picoprasinophytes contribute to deep sea export. Microorganisms, 10(5), 961. https://doi.org/10.3390/microorganisms10050961 

Klasek, S., Brock, M., Calder, W., Morrison, H., Weinig, C., & Maïgnien, L. (2022). Spatiotemporal heterogeneity and intragenus variability in rhizobacterial associations with Brassica rapa growth. MSystems, e00060–e00022. https://doi.org/10.1128/msystems.00060-22 

Petrosino, G., Ponte, G., Volpe, M., Zarrella, I., Ansaloni, F., Langella, C., Di Cristina, G., Finaurini, S., Russo, M., Basu, S., Musacchia, F., Ristoratore, F., Pavlinic, D., Benes, V., Ferrante, M., Albertin, C., Simakov, O., Gustincich, S., Fiorito, G., & Sanges, R. (2022). Identification of LINE retrotransposons and long non-coding RNAs expressed in the octopus brain. BMC Biology, 20(1) 116. https://doi.org/10.1186/s12915-022-01303-5 

Sanders‐DeMott, R., Eagle, M., Kroeger, K., Wang, F., Brooks, T., Suttles, J., Nick, S., Mann, A., & Tang, J. (2022). Impoundment increases methane emissions in Phragmites‐invaded coastal wetlands. Global Change Biology. https://doi.org/10.1111/gcb.16217 

Walker, S. E., & Echeverri, K. (2022). Spinal cord regeneration—The origins of progenitor cells for functional rebuilding. Current Opinion in Genetics & Development, 75, 101917. https://doi.org/10.1016/j.gde.2022.101917 

Aymonnier, K., Ng, J., Fredenburgh, L. E., Zambrano-Vera, K., Muenzer, P., Gutch, S., Fukui, S., Desjardins, M., Subramaniam, M., Baron, R. M., Raby, B. A., Perrella, M. A., Lederer, J. A., & Wagner, D. D. (2022). Inflammasome activation in neutrophils of patients with severe COVID-19. Blood Advances, 6(7), 2001–2013. https://doi.org/10.1182/bloodadvances.2021005949

Cardon, Z. G., Peredo, E. L., Enloe, C. M., Oakey, J. S., Wu, S.-Z., & Bezanilla, M. (2022). Slip slidin’ away: bristle-driven gliding by Tetradesmus deserticola (chlorophyta) in microfluidic chambers(1). Journal of Phycology. https://doi.org/10.1111/jpy.13271

Kalia, N., Hauser, K., Burton, S., Hossainey, M., Zelle, M., Horb, M., & Grayfer, L. (2022). Endogenous retroviruses augment amphibian (Xenopus laevis) tadpole antiviral protection. Journal of Virology, e00634–e00622. https://doi.org/10.1128/jvi.00634-22 

Lebeaux, R., Madan, J., Nguyen, Q., Coker, M., Dade, E., Moroishi, Y., Palys, T., Ross, B., Pettigrew, M., Morrison, H., Karagas, M., & Hoen, A. (2022). Impact of antibiotics on off-target infant gut microbiota and resistance genes in cohort studies. Pediatric Research, 1–10. https://doi.org/10.1038/s41390-022-02104-w  CC

Sun, D., Bredeson, J., Bruce, H., & Patel, N. (2022). Identification and classification of cis-regulatory elements in the amphipod crustacean Parhyale hawaiensis. Development. https://doi.org/10.1242/dev.200793 

Winters, G., Teichberg, M., Reuter, H., Viana, I. G., & Willette, D. A. (2022). Editorial: Seagrasses under times of change. Frontiers in Plant Science, 13, 870478. https://doi.org/10.3389/fpls.2022.870478 

Albertin, C. B., Medina-Ruiz, S., Mitros, T., Schmidbaur, H., Sanchez, G., Wang, Z. Y., Grimwood, J., Rosenthal, J. J. C., Ragsdale, C. W., Simakov, O., & Rokhsar, D. S. (2022). Genome and transcriptome mechanisms driving cephalopod evolution. Nature Communications, 13(1), 2427. https://doi.org/10.1038/s41467-022-29748-w

Richter, N., Russell, J., Amaral-Zettler, L., DeGroff, W., Raposeiro, P., Gonçalves, V., de Boer, E., Pla-Rabes, S., Hernández, A., Benavente, M., Ritter, C., Sáez, A., Bao, R., Trigo, R., Prego, R., & Giralt, S. (2022). Long-term hydroclimate variability in the sub-tropical North Atlantic and anthropogenic impacts on lake ecosystems: a case study from Flores Island, the Azores. Quaternary Science Reviews, 285, 107525. https://doi.org/10.1016/j.quascirev.2022.107525

DeGiorgis, J., Jang, M., & Bearer, E. (2022). The giant axon of the squid: s simple system for axonal transport studies. Axonal Transport 2431, 3–22. https://doi.org/10.1007/978-1-0716-1990-2_1

Echeverri, K., Fei, J., & Tanaka, E. (2022). Chapter Twenty-Two The Axolotl’s journey to the modern molecular era. In Emerging Model Systems in Developmental Biology (Vol. 147, pp. 631–658). https://doi.org/10.1016/bs.ctdb.2021.12.010 

Loescher, H., Vargas, R., Mirtl, M., Morris, B., Pauw, J., Yu, X., Kutsch, W., Mabee, P., Tang, J., Ruddell, B., Pulsifer, P., Bäck, J., Zacharias, S., Grant, M., Feig, G., Zheng, L., Waldmann, C., & Genazzio, M. (2022). Building a global ecosystem research infrastructure to address global grand challenges for macrosystem ecology. Earth’s Future, 10, e2020EF001696. https://doi.org/10.1029/2020ef001696

Lyons, D., & Henry, J. (2022). Slipper snail tales: how Crepidula fornicata and Crepidula atrasolea became model molluscs. Emerging Model Systems in Developmental Biology, 147, 375–399. https://doi.org/10.1016/bs.ctdb.2021.12.013 

Schmidbaur, H., Kawaguchi, A., Clarence, T., Fu, X., Hoang, O. P., Zimmermann, B., Ritschard, E. A., Weissenbacher, A., Foster, J. S., Nyholm, S., Bates, P. A., Albertin, C. B., Tanaka, E., & Simakov, O. (2022). Emergence of novel cephalopod gene regulation and expression through large-scale genome reorganization. Nature Communications, 13(1), 2172. https://doi.org/10.1038/s41467-022-29694-7

Buresch, K. C., Sklar, K., Chen, J. Y., Madden, S. R., Mongil, A. S., Wise, G. V., Boal, J. G., & Hanlon, R. T. (2022). Contact chemoreception in multi-modal sensing of prey by Octopus. Journal of Comparative Physiology. A, Neuroethology, Sensory, Neural, and Behavioral Physiology. https://doi.org/10.1007/s00359-022-01549-y  

Pomerantz, A., Sahlin, K., Vasiljevic, N., Seah, A., Lim, M., Humble, E., Kennedy, S., Krehenwinkel, H., Winter, S., Ogden, R., & Prost, S. (2022). Rapid in situ identification of biological specimens via DNA amplicon sequencing using miniaturized laboratory equipment. Nature Protocols. https://doi.org/10.1038/s41596-022-00682-x  

van Daalen, S. F., Hernandez, C. M., Caswell, H., Neubert, M. G., & Gribble, K. E. (2022). The contributions of maternal age heterogeneity to variance in lifetime reproductive output. American Naturalist,199(5). https://doi.org/10.1086/718716  

Katz, H. R., Arcese, A. A., Bloom, O., & Morgan, J. R. (2022). Activating transcription factor 3 (ATF3) is a highly conserved pro-regenerative transcription factor in the vertebrate nervous system. Frontiers in Cell and Developmental Biology, 10, 824036. https://doi.org/10.3389/fcell.2022.824036 

Stolp, Z. D., Kulkarni, M., Liu, Y., Zhu, C., Jalisi, A., Lin, S., Casadevall, A., Cunningham, K. W., Pineda, F. J., Teng, X., & Hardwick, J. M. (2022). Yeast cell death pathway requiring AP-3 vesicle trafficking leads to vacuole/lysosome membrane permeabilization. Cell Reports, 39(2), 110647. https://doi.org/10.1016/j.celrep.2022.110647 

Stunz, E., Fetcher, N., Lavretsky, P., Mohl, J., Tang, J., & Moody, M. (2022). Landscape genomics provides evidence of ecotypic adaptation and a barrier to gene flow at treeline for the arctic foundation species Eriophorum vaginatum. Frontiers in Plant Science, 13, 860439. https://doi.org/10.3389/fpls.2022.860439 

Moran, M., Kujawinski, E., Schroer, W., Amin, S., Bates, N., Bertrand, E., Braakman, R., Brown, C., Covert, M., Doney, S., Dyhrman, S., Edison, A., Eren, A. M., Levine, N., Li, L., Ross, A., Saito, M., Santoro, A., Segrè, D., Shade, A., Sullivan, M. B., & Vardi, A. (2022). Microbial metabolites in the marine carbon cycle. Nature Microbiology, 7(4), 508–523. https://doi.org/10.1038/s41564-022-01090-3;

Paris, M., Wolff, C., Patel, N., & Averof, M. (2022). The crustacean model Parhyale hawaiensis. Current Topics in Developmental Biology, 147, 199–230. https://doi.org/10.1016/bs.ctdb.2022.02.001

Snead, W., Jalihal, A., Gerbich, T., Seim, I., Hu, Z., & Gladfelter, A. (2022). Membrane surfaces regulate assembly of ribonucleoprotein condensates. Nature Cell Biology. https://doi.org/10.1038/s41556-022-00882-3

Tarrés, M., Cerdà-Domènech, M., Pedrosa-Pàmies, R., Rumín-Caparrós, A., Calafat, A., Canals, M., & Sanchez-Vidal, A. (2022). Particle fluxes in submarine canyons along a sediment-starved continental margin and in the adjacent open slope and basin in the SW Mediterranean Sea. Progress in Oceanography, 203, 102783. https://doi.org/10.1016/j.pocean.2022.102783

Weidner, E. (2022). The Spraguea Parasitism in Anglerfishes of the Genus Lophius. Acta Parasitologica. https://doi.org/10.1007/s11686-022-00546-0

Cronin-Golomb, O., Harringmeyer, J. P., Weiser, M. W., Zhu, X., Ghosh, N., Novak, A. B., Forbrich, I., & Fichot, C. G. (2022). Modeling benthic solar exposure (UV and visible) in dynamic coastal systems to better inform seagrass habitat suitability. Science of the Total Environment, 812, 151481. https://doi.org/10.1016/j.scitotenv.2021.151481 

Horb, M., Abu-Daya, A., Wlizla, M., Noble, A., & Guille, M. (2022). Advances in genome editing tools. In Xenopus (pp. 207–221). https://doi.org/10.1201/9781003050230-16 

Ramirez-Puebla, S. T., Weigel, B. L., Jack, L., Schlundt, C., Pfister, C. A., & Welch, J. L. M. (2022). Spatial organization of the kelp microbiome at micron scales. Microbiome, 10(1), 52. https://doi.org/10.1186/s40168-022-01235-w

Espino, C. M., Lewis, C., Wells, K., O’Neil, D., & Griffith, T. (2022). Na(v)1.1 plays a temperature dependent role in proprioceptor excitability. Biophysical Journal, 121(3), 95–95.  https://doi.org/10.1016/j.bpj.2021.11.2250 

Parent, M. T., Mautino, A. R., & Kumar, A. (2022). A multi-view line scanning confocal microscope for fast imaging of extended samples. Biophysical Journal, 121(3), 411A-411A.  https://doi.org/10.1016/j.bpj.2021.11.710 

Ma, T., Parker, T., Fetcher, N., Unger, S., Gewirtzman, J., Moody, M., & Tang, J. (2022). Leaf and root phenology and biomass of Eriophorum vaginatum in response to warming in the Arctic. Journal of Plant Ecology, rtac010. https://doi.org/10.1093/jpe/rtac010 

Chowdhury, P. R., Golas, S. M., Alteio, L., Stevens, J. T. E., Billings, A. F., Blanchard, J. L., Melillo, J. M., & DeAngelis, K. M. (2021). The transcriptional response of soil bacteria to long-term warming and short-term seasonal fluctuations in a terrestrial forest. Frontiers in Microbiology, 12, 666558. https://doi.org/10.3389/fmicb.2021.666558

Sanchez Trivino, C. A., Landinez, M. P., Duran, S., Gomez, M. del P., & Nasi, E. (2022). Modulation of G(q)/PLC-mediated signaling by acute lithium exposure. Frontiers in Cellular Neuroscience, 16, 838939. https://doi.org/10.3389/fncel.2022.838939 

Molines, A. T., Lemière, J., Gazzola, M., Steinmark, I. E., Edrington, C. H., Hsu, C.-T., Real-Calderon, P., Suhling, K., Goshima, G., Holt, L. J., Thery, M., Brouhard, G. J., & Chang, F. (2022). Physical properties of the cytoplasm modulate the rates of microtubule polymerization and depolymerization. Developmental Cell, 57(4), 466-479.e6. https://doi.org/10.1016/j.devcel.2022.02.001

Paul, B., & Eren, A. (2022). Eco-evolutionary significance of domesticated retroelements in microbial genomes. Mobile DNA, 13(1), 6. https://doi.org/10.1186/s13100-022-00262-6

Rodriguez, F., Yushenova, I. A., DiCorpo, D., & Arkhipova, I. R. (2022). Bacterial N4-methylcytosine as an epigenetic mark in eukaryotic DNA. Nature Communications, 13(1), 1072. https://doi.org/10.1038/s41467-022-28471-w

Wallace, J., Chang, C., Kegawa, Y., Feigen, E., Ralowicz, A., Humphrey, G., Petersen, J., Blank, P., & Zimmerberg, J. (2022). Identification of endogenous amyloid-like bodies in the CNS of Doryteuthis pealeii. Biophysical Journal, 121(3), 353a. https://doi.org/10.1016/j.bpj.2021.11.1002 

Wallace, J., Parent, M., Raut, P., Waters, H., Zimmerberg, J., & Hess, S. (2022). The primary structure of the cytoplasmic tail domain of influenza hemagglutinin regulates its co-clustering with phosphatidylinositol 4,5-bisphosphate. Biophysical Journal, 121(3), 76a. https://doi.org/10.1016/j.bpj.2021.11.2301 

Aguado, M. T., Ponz-Segrelles, G., Glasby, C. J., Ribeiro, R. P., Nakamura, M., Oguchi, K., Omori, A., Kohtsuka, H., Fischer, C., Ise, Y., Jimi, N., & Miura, T. (2022). Ramisyllis kingghidorahi n. Sp., a new branching annelid from Japan. Organisms Diversity & Evolution. https://doi.org/10.1007/s13127-022-00545-z

Cesare, B., Campomenosi, N., & Shribak, M. (2022). Polychromatic polarization: Boosting the capabilities of the good old petrographic microscope. Geology, 50(2), 137–141. https://doi.org/10.1130/G49303.1

Haviland, K. A., Howarth, R. W., Marino, R., & Hayn, M. (2022). Variation in sediment and seagrass characteristics reflect multiple stressors along a nitrogen-enrichment gradient in a New England lagoon. Limnology and Oceanography. https://doi.org/10.1002/lno.12025

Lagache, T., Hanson, A., Perez-Ortega, J. E., Fairhall, A., & Yuste, R. (2021). Tracking calcium dynamics from individual neurons in behaving animals. Plos Computational Biology, 17(10), e1009432. https://doi.org/10.1371/journal.pcbi.1009432

Mäthger, L. M., Bok, M. J., Liebich, J., Sicius, L., & Nilsson, D.-E. (2022). Pupil dilation and constriction in the skate Leucoraja erinacea in a simulated natural light field. The Journal of Experimental Biology, 225(4). https://doi.org/10.1242/jeb.243221