Scientific Publications

As of September 25, 2023

Tarrés, M., Cerdà-Domènech, M., Pedrosa-Pàmies, R., Baza-Varas, A., Calafat, A., Sanchez-Vidal, A., & Canals, M. (2023). Transport and distributions of naturally and anthropogenically sourced trace metals and Arsenic in submarine canyons. Progress In Oceanography, 218, 103122. https://doi.org/10.1016/j.pocean.2023.103122

Baker, J. L., Mark Welch, J. L., Kauffman, K. M., McLean, J. S., & He, X. (2023). The oral microbiome: Diversity, biogeography and human health. Nature Reviews Microbiology, 1–16. https://doi.org/10.1038/s41579-023-00963-6

Guimond, J. A., Demir, C., Kurylyk, B. L., Walvoord, M. A., McClelland, J. W., & Cardenas, M. B. (2023). Wind-modulated groundwater discharge along a microtidal Arctic coastline. Environmental Research Letters, 18(9), 094042. https://doi.org/10.1088/1748-9326/acf0d8

Lee, J. S., Lowell, J. L., Whitewater, K., Roane, T. M., Miller, C. S., Chan, A. P., Sylvester, A. W., Jackson, D., & Hunter, L. E. (2023). Monitoring environmental microbiomes: Alignment of microbiology and computational biology competencies within a culturally integrated curriculum and research framework. Molecular Ecology Resources. https://doi.org/10.1111/1755-0998.13867

Massoud, E., Hoffman, F., Shi, Z., Tang, J., Alhajjar, E., Barnes, M., Braghiere, R., Cardon, Z., Collier, N., Crompton, O., Dennedy-Frank, P., Gautam, S., Gonzalez-Meler, M., Green, J., Koven, C., Levine, P., MacBean, N., Mao, J., Mills, R., Mishra, U., Mudunuru, M., Renchon, A. A., Scott, S., Siirila-Woodburn, E. R., Sprenger, M., Tague, C., Wang, Y., Xu, C., & Zarakas, C. (2023). Perspectives on Artificial Intelligence for Predictions in Ecohydrology. Artificial Intelligence for the Earth Systems. https://doi.org/10.1175/aies-d-23-0005.1

Plummer, A., Freilich, M., Benzi, R., Choi, C., Sudek, L., Worden, A., Toschi, F., & Mahadevan, A. (2023). Oceanic frontal divergence alters phytoplankton competition and distribution. Journal of Geophysical Research - Oceans, e2023JC019902. https://doi.org/10.1029/2023jc019902

Rastetter, E. B., Griffin, K. L., Kwiatkowski, B. L., & Kling, G. W. (2023). Ecosystem feedbacks constrain the effect of day-to-day weather variability on land–atmosphere carbon exchange. Global Change Biology. https://doi.org/10.1111/gcb.16926

Strock, S., Costello, J. H., Daniels, J., Katija, K., & Colin, S. P. (2023). Nectophore coordination and kinematics by physonect siphonophores. Journal of Experimental Biology, jeb.245955. https://doi.org/10.1242/jeb.245955

Tank, S. E., McClelland, J. W., Spencer, R. G. M., Shiklomanov, A. I., Suslova, A., Moatar, F., Amon, R. M. W., Cooper, L. W., Elias, G., Gordeev, V. V., Guay, C., Gurtovaya, T. Yu., Kosmenko, L. S., Mutter, E. A., Peterson, B. J., Peucker-Ehrenbrink, B., Raymond, P. A., Schuster, P. F., Scott, L., Staples, R., Striegl, R. G., Tretiakov, M., Zhulidov, A. V., Zimov, N., Zimov, S., & Holmes, R. M. (2023). Recent trends in the chemistry of major northern rivers signal widespread Arctic change. Nature Geoscience, 16, 789-796. https://doi.org/10.1038/s41561-023-01247-7

Brady, S. T., Mesnard-Hoaglin, N. A., Priego, M., Dziechciowska, J., Morris, S., Kang, M., Tsai, M. Y., Purks, J. L., Klein, A., Gaona, A., Melloni, A., Connors, T., Hyman, B., Song, Y., & Morfini, G. A. (2023). Toxic effects of mutant huntingtin in axons are mediated by its proline-rich domain. Brain, awad280. https://doi.org/10.1093/brain/awad280

Clark, J., Mannino, A., Spencer, R., Tank, S., & McClelland, J. (2023). Quantification of Discharge‐Specific Effects on Dissolved Organic Matter Export From Major Arctic Rivers From 1982 Through 2019. Global Biogeochemical Cycles, 37(8), e2023GB007854. https://doi.org/10.1029/2023gb007854

Fakhri, A. M., Warner, M. H., DeGiorgis, J. A., & Cornely, K. (2023). Mycobacteriophage Rita: A cluster F1 phage discovered in North Easton, Massachusetts. Microbiology Resource Announcements, e00510-23. https://doi.org/10.1128/MRA.00510-23

Amaral-Zettler, L. (2023). Algae. In Encyclopedia of Astrobiology (pp. 81–83). Springer Nature. https://doi.org/10.1007/978-3-662-65093-6_48

Van Bruggen, S., Jarrot, P.-A., Thomas, E., Sheehy, C. E., Silva, C. M. S., Hsu, A. Y., Cunin, P., Nigrovic, P. A., Gomes, E. R., Luo, H. R., Waterman, C. M., & Wagner, D. D. (2023). NLRP3 is essential for neutrophil polarization and chemotaxis in response to leukotriene B4 gradient. Proceedings of the National Academy of Sciences, 120(35), e2303814120. https://doi.org/10.1073/pnas.2303814120

Gillis, J. A. (2023). Scales, scutes, and embryonic origins of the vertebrate dermal skeleton. Proceedings of the National Academy of Sciences, 120(33), e2310552120. https://doi.org/10.1073/pnas.2310552120

Maienschein, J. (2023). Garland Allen’s Last Book Project. Journal of the History of Biology. https://doi.org/10.1007/s10739-023-09726-8

Neher, W., Rasmussen, C., Braybrook, S., Lažetić, V., Stowers, C., Mooney, P., Sylvester, A., & Springer, P. (2023). The maize preligule band is subdivided into distinct domains with contrasting cellular properties prior to ligule outgrowth. Development. https://doi.org/10.1242/dev.201608

Rand, D. M., Nunez, J. C. B., Williams, S., Rong, S., Burley, J. T., Neil, K. B., Spierer, A. N., McKerrow, W., Johnson, D. S., Raynes, Y., Fayton, T. J., Skvir, N., Ferranti, D. A., Zeff, M. G., Lyons, A., Okami, N., Morgan, D. M., Kinney, K., Brown, B. R. P., Giblin, A. E., & Cardon, Z. G. (2023). Parasite manipulation of host phenotypes inferred from transcriptional analyses in a trematode-amphipod system. Molecular Ecology. https://doi.org/10.1111/mec.17093

Saffer, A. M., Baskin, T. I., Verma, A., Stanislas, T., Oldenbourg, R., & Irish, V. F. (2023). Cellulose assembles into helical bundles of uniform handedness in cell walls with abnormal pectin composition. The Plant Journal. https://doi.org/10.1111/tpj.16414

Schön, I., Fontaneto, D., & Peredo, E. (2023). Microbiomes of aquatic animals. Hydrobiologia. https://doi.org/10.1007/s10750-023-05328-x

Voss, G., & Rosenthal, J. J. C. (2023). High-level RNA editing diversifies the coleoid cephalopod brain proteome. Briefings in Functional Genomics, elad034. https://doi.org/10.1093/bfgp/elad034

Amaral-Zettler, L. (2023). Eukarya. In M. Gargaud, W. M. Irvine, R. Amils, P. Claeys, H. J. Cleaves, M. Gerin, D. Rouan, T. Spohn, S. Tirard, & M. Viso (Eds.), Encyclopedia of Astrobiology (pp. 931–934). Springer. https://doi.org/10.1007/978-3-662-65093-6_537

Jones, I., Schumm, M., Stanley, J., Hanlon, R., & Mooney, T. (2023). Longfin squid reproductive behaviours and spawning withstand wind farm pile driving noise. ICES Journal of Marine Science. https://doi.org/10.1093/icesjms/fsad117

Matrishin, C., Haase, E., Dewhirst, F., Mark Welch, J., Miranda-Sanchez, F., Chen, T., MacFarland, D., & Kauffman, K. (2023). Phages are unrecognized players in the ecology of the oral pathogen Porphyromonas gingivalis. Microbiome, 11. https://doi.org/10.1186/s40168-023-01607-w

Vargas, K. J., Colosi, P. L., Girardi, E., Park, J.-M., Harmon, L. E., & Chandra, S. S. (2023). α-Synuclein colocalizes with AP180 and affects the size of clathrin lattices. Journal of Biological Chemistry, 105091. https://doi.org/10.1016/j.jbc.2023.105091

Allsman, L., Bellinger, M., Huang, V., Duong, M., Contreras, A., Romero, A., Verboonen, B., Sidhu, S., Zhang, X., Steinkraus, H., Uyehara, A., Martinez, S., Sinclair, R., Soriano, G., Diep, B., V., D., Noriega, A., Drakakaki, G., Sylvester, A., & Rasmussen, C. (2023). Subcellular positioning during cell division and cell plate formation in maize. Frontiers in Plant Science, 14, 1204889. https://doi.org/10.3389/fpls.2023.1204889

Feng, H., Bavister, G., Gribble, K. E., & Welch, D. B. M. (2023). Highly efficient CRISPR-mediated gene editing in a rotifer. PLOS Biology, 21(7), e3001888. https://doi.org/10.1371/journal.pbio.3001888

Fujita, R., Augyte, S., Bender, J., Brittingham, P., Buschmann, A. H., Chalfin, M., Collins, J., Davis, K. A., Gallagher, J. B., Gentry, R., Gruby, R. L., Kleisner, K., Moritsch, M., Price, N., Roberson, L., Taylor, J., & Yarish, C. (2023). Seaweed blue carbon: Ready? Or Not? Marine Policy, 155, 105747. https://doi.org/10.1016/j.marpol.2023.105747

McGillivary, R. M., Sood, P., Hammar, K., & Marshall, W. F. (2023). The nuclear transport factor CSE1 drives macronuclear volume increase and macronuclear node coalescence in Stentor coeruleus. IScience, 26(8), 107318. https://doi.org/10.1016/j.isci.2023.107318

Valiela, I., Lloret, J., & Chenoweth, K. (2023). Effects of Climate Change on Salt Marshes. In Climate Change and Estuaries (1st Edition, pp. 355–380). Taylor & Francis. https://doi.org/10.1201/9781003126096-21

Holland, P., Langdale, J., Patel, N., & Stone, G. (2023). Discovery of the bicycle gene family provides new insights into insect manipulation of plant development during gall induction. Faculty Reviews, 12(16). https://doi.org/10.12703/r-01-0000022 (https://europepmc.org/article/med/37449009)

Lewis, T. R., Phan, S., Castillo, C. M., Kim, K.-Y., Coppenrath, K., Thomas, W., Hao, Y., Skiba, N. P., Horb, M. E., Ellisman, M. H., & Arshavsky, V. Y. (2023). Photoreceptor disc incisures form as an adaptive mechanism ensuring the completion of disc enclosure. eLife, 12, e89160. https://doi.org/10.7554/eLife.89160

Steinbach, R., Baidouri, F., Mitchison-Field, L., Lim, F., Ekena, J., Vogt, E., Gladfelter, A., Theberge, A., & Amend, A. (2023). Malassezia is widespread and has undescribed diversity in the marine environment. Fungal Ecology, 65, 101273. https://doi.org/10.1016/j.funeco.2023.101273

Kosmopoulos, J. C., Campbell, D. E., Whitaker, R. J., & Wilbanks, E. G. (2023). Horizontal Gene Transfer and CRISPR Targeting Drive Phage-Bacterial Host Interactions and Coevolution in “Pink Berry” Marine Microbial Aggregates. Applied and Environmental Microbiology, e0017723. https://doi.org/10.1128/aem.00177-23

Mugnaini, M., Mehrotra, D., Davoine, F., Sharma, V., Mendes, A. R., Gerhardt, B., Concha-Miranda, M., Brecht, M., & Clemens, A. M. (2023). Supra-orbital whiskers act as wind-sensing antennae in rats. PLoS Biology, 21(7), e3002168. https://doi.org/10.1371/journal.pbio.3002168

Arredondo, M., Fang, Y., Jones, M., Yabusaki, S., Cardon, Z., & Keiluweit, M. (2023). Resolving dynamic mineral-organic interactions in the rhizosphere by combining in-situ microsensors with plant-soil reactive transport modeling. Soil Biology and Biochemistry, 184, 109097. https://doi.org/10.1016/j.soilbio.2023.109097

Eckmann, C. A., Eberle, J. S., Wittmers, F., Wilken, S., Bergauer, K., Poirier, C., Blum, M., Makareviciute-Fichtner, K., Jimenez, V., Bachy, C., Vermeij, M. J. A., & Worden, A. Z. (2023). Eukaryotic algal community composition in tropical environments from solar salterns to the open sea. Frontiers in Marine Science, 10. https://www.frontiersin.org/articles/10.3389/fmars.2023.1131351

Torres-Morales, J., Mark Welch, J. L., Dewhirst, F. E., & Borisy, G. G. (2023). Site-specialization of human oral Gemella species. Journal of Oral Microbiology, 15(1), 2225261. https://doi.org/10.1080/20002297.2023.2225261

Baden, T., Briseño, J., Coffing, G., Cohen-Bodénès, S., Courtney, A., Dickerson, D., Dölen, G., Fiorito, G., Gestal, C., Gustafson, T., Heath-Heckman, E., Hua, Q., Imperadore, P., Kimbara, R., Król, M., Lajbner, Z., Lichilín, N., Macchi, F., McCoy, M. J., Nishiguchi, M. K., Nyholm, S. V., Otjacques, E., Perez-Ferrer, P. A., Ponte, G., Pungor, J. R., Rogers, T. F., Rosenthal, J. J. C., Rouressol, L., Rubas, N., Sanchez, G., Santos, C. P., Schultz, D. T., Seuntjens, E., Songco-Casey, J. O., Stewart, I. E., Styfhals, R., Tuanapaya, S., Vijayan, N., Weissenbacher, A., Zifcakova, L., Schulz, G., Weertman, W., Simakov, O., & Albertin, C. (2023). Cephalopod-omics: Emerging Fields and Technologies in Cephalopod Biology. Integrative and Comparative Biology, icad087. https://doi.org/10.1093/icb/icad087

Jeffery, W. R., Li, B., Ng, M., Li, L., Gorički, Š., & Ma, L. (2023). Differentially expressed chaperone genes reveal a stress response required for unidirectional regeneration in the basal chordate Ciona. BMC Biology, 21. https://doi.org/10.1186/s12915-023-01633-y

Koop-Jakobsen, K., & Dolch, T. (2023). Future climate conditions alter biomass of salt marsh plants in the Wadden Sea. Marine Biodiversity, 53. https://doi.org/10.1007/s12526-023-01347-y

Linklater, D., Vailionis, A., Ryu, M., Kamegaki, S., Morikawa, J., Mu, H., Smith, D., Maasoumi, P., Ford, R., Katkus, T., Blamires, S., Kondo, T., Nishijima, Y., Moraru, D., Shribak, M., O’Connor, A., Ivanova, E. P., Ng, S. H., Masuda, H., & Juodkazis, S. (2023). Structure and Optical Anisotropy of Spider Scales and Silk: The Use of Chromaticity and Azimuth Colors to Optically Characterize Complex Biological  Structures. Nanomaterials, 13(12). https://doi.org/10.3390/nano13121894

Vicente-Rodríguez, L. C., Torres-Arroyo, A. C., Hernández-Vázquez, A., Rosa-Casillas, M., Bracho-Rincón, D. P., de Jesús, P. M., Behra, M. L., Habib, M. R., Zhou, X.-N., Rosenthal, J. J. C., & Miller, M. W. (2023). The FMRF-NH₂ gated sodium channel of Biomphalaria glabrata: Localization and expression following infection by Schistosoma mansoni. PLoS Neglected Tropical Diseases, 17(6), e0011249. https://doi.org/10.1371/journal.pntd.0011249

Wilken, S., Yung, C. C. M., Poirier, C., Massana, R., Jimenez, V., & Worden, A. Z. (2023). Choanoflagellates alongside diverse uncultured predatory protists consume the abundant open-ocean cyanobacterium Prochlorococcus. Proceedings of the National Academy of Sciences of the United States of America, 120(27), e2302388120. https://doi.org/10.1073/pnas.2302388120

Ahuja, N., Hwaun, E., Pungor, J. R., Rafiq, R., Nemes, S., Sakmar, T., Vogt, M. A., Grasse, B., Quiroz, J. D., Montague, T. G., Null, R. W., Dallis, D. N., Gavriouchkina, D., Marletaz, F., Abbo, L., Rokhsar, D. S., Niell, C. M., Soltesz, I., Albertin, C. B., & Rosenthal, J. J. C. (2023). Creation of an albino squid line by CRISPR-Cas9 and its application for in vivo functional imaging of neural activity. Current Biology. https://doi.org/10.1016/j.cub.2023.05.066

Arkhipova, I., Yushenova, I., & Rodriguez, F. (2023). Shaping eukaryotic epigenetic systems by horizontal gene transfer. Bioessays, 45(7), e2200232. https://doi.org/10.1002/bies.202200232

Imperadore, P., Jones, K. M., Morgan, J. R., De Sio, F., & Stahnisch, F. W. (2023). Editorial: Regeneration from cells to limbs: past, present, and future. Frontiers in Cell and Developmental Biology, 11. https://www.frontiersin.org/articles/10.3389/fcell.2023.1229613

Itano, M. S., Kumar, A., & Maddox, P. S. (2023). Editorial: Live cell imaging: Cell and developmental research bridging education, optical engineering, industry, software, shared facilities. Frontiers in Cell and Developmental Biology, 11. https://www.frontiersin.org/articles/10.3389/fcell.2023.1191235

Ruff, S. E., Humez, P., de Angelis, I. H., Diao, M., Nightingale, M., Cho, S., Connors, L., Kuloyo, O. O., Seltzer, A., Bowman, S., Wankel, S. D., McClain, C. N., Mayer, B., & Strous, M. (2023). Hydrogen and dark oxygen drive microbial productivity in diverse groundwater ecosystems. Nature Communications, 14. https://doi.org/10.1038/s41467-023-38523-4

von Montfort, G. M., Costello, J. H., Colin, S. P., Morandini, A. C., Migotto, A. E., Maronna, M. M., Reginato, M., Miyake, H., & Nagata, R. M. (2023). Ontogenetic transitions, biomechanical trade-offs and macroevolution of scyphozoan medusae swimming patterns. Scientific Reports, 13. https://doi.org/10.1038/s41598-023-34927-w

Birk, M. A., Liscovitch-Brauer, N., Dominguez, M. J., McNeme, S., Yue, Y., Hoff, J. D., Twersky, I., Verhey, K. J., Sutton, R. B., Eisenberg, E., & Rosenthal, J. J. C. (2023). Temperature-dependent RNA editing in octopus extensively recodes the neural proteome. Cell, 186(12), 2544-2555.e13. https://doi.org/10.1016/j.cell.2023.05.004

Miller, S. E., Colman, A. S., & Waldbauer, J. R. (2023). Metaproteomics reveals functional partitioning and vegetational variation among permafrost-affected Arctic soil bacterial communities. MSystems, e01238-22. https://doi.org/10.1128/msystems.01238-22