Ecosystems Publications

Recent Publications

Reed D. E., Chu H., Peter B. G., Chen J., Abraha M., Amiro B., Anderson R. G., Arain M. A., Arruda P., Barron-Gafford G. A., Bernacchi C., Beverly D. P., Biraud S. C., Black T. A., Blanken P. D., Bohrer G., Bowler R., Bowling D. R., Bret-Harte M. S., Bretfeld M., Brunsell N. A., Bullock S. H., Celis G., Chen X., Classen A. T., Cook D. R., Cueva A., Dalmagro H. J., Davis K., Desai A., Duff A. J., Dunn A. L., Durden D., Edgar C. W., Euskirchen E., Bracho R., Ewers B., Flanagan L. B., Florian C., Foord V., Forbrich I., Forsythe B. R., Frank J., Garatuza-Payan J., Goslee S., Gough C., Green M., Griffis T., Helbig M., Hill A. C., Hinkle R., Horne J., Humphreys E., Ikawa H., Iwahana G., Jassal R., Johnson B., Johnson M., Kannenberg S. A., Kelsey E., King J., Knowles J. F., Knox S., Kobayashi H., Kolb T., Kolka R., Krauss K. W., Kutzbach L., Lamb B., Law B., Lee S.-C., Lee X., Liu H., Loescher H. W., Malone S. L., Matamala R., Mauritz M., Metzger S., Meyer G., Mitra B., Munger J. W., Nesic Z., Noormets A., O'Halloran T. L., O'Keeffe P. T., Oberbauer S. F., Oechel W., Oikawa P., Olivas P. C., Ouimette A., Pastorello G., Perez-Quezada J. F., Phillips C., Posse G., Qu B., Quinton W. L., Reba M. L., Richardson A. D., Picasso V., Rocha A. V., Rodriguez J. C., Ruzol R., Saleska S., Scott R. L., Schreiner-McGraw A. P., Schuur E. A. G., Silveira M., Sonnentag O., Spittlehouse D. L., Staebler R., Starr G., Staudhammer C., Still C., Sturtevant C., Sullivan R. C., Suyker A., Trejo D., Ueyama M., Vargas R., Viner B., Vivoni E. R., Wang D., Ward E. J., Wiesner S., Windham-Myers L., Yannick D., Yepez E. A., Zenone T., Zhao J., Zona D. (2025). Network of networks: Time series clustering of AmeriFlux sites. Agricultural And Forest Meteorology. 372:110686. doi: 10.1016/j.agrformet.2025.110686

Bölscher T., Cardon Z. G., Garcia Arredondo M., Grand S., Griffen G., Hestrin R., Imboden J., Jamoteau F., Lacroix E. M., Pérez Castro S., Persson P., Riley W. J., Keiluweit M. (2025). Vulnerability of mineral-organic associations in the rhizosphere. Nature Communications. 16:5527. doi: 10.1038/s41467-025-61273-4

Uveges B. T., Howarth R. W., Sparks J. P. (2025). Fossil fuel methane emissions likely underestimated in a model based on atmospheric δ13C trends. Proceedings Of The National Academy Of Sciences Of The United States Of America. 122:e2507837122. doi: 10.1073/pnas.2507837122

Conte M. H., Pedrosa-Pàmies R., Weber J. C., Johnson R. J. (2025). The climatology of the deep particle flux in the oligotrophic western North Atlantic gyre, 1978–2022. Progress In Oceanography. 234:103433. doi: 10.1016/j.pocean.2025.103433

Valiela I., Chenoweth K., Day J. (2025). Meta-analysis of vegetation responses to experimental nitrogen enrichments done in salt marshes under different sea level rise regimes reveal interaction of N supply and sea level rise. The Science Of The Total Environment. 975:179198. doi: 10.1016/j.scitotenv.2025.179198

Sullivan H. L., Holtzer J., Deegan L. A., Bowen J. L. (2025). The Effect of Runnels on Salt Marsh Sediment Dynamics, Vegetation, and Nitrogen Cycling. Estuaries And Coasts. 48:73. doi: 10.1007/s12237-025-01511-6

Joern G. M., Pedrosa-Pàmies R., Jiang X., Liu Z., Bochdansky A. B. (2025). Characterization of microbial biofilms on marine plastics: community development and density implications for vertical transport dynamics. Frontiers In Marine Science. 12:1581727. doi: 10.3389/fmars.2025.1581727

Malhotra A., Megonigal P., Forbrich I., Määttä T., Morris K., Bittencourt Peixoto R., Wilson S., Zheng J., Bailey V. (2025). Revisiting the primary production control on wetland methane emission. doi: 10.5194/egusphere-egu25-12843

Peck E. K., Walker J. E., Ackerman K. V., Carr J., Correll M. D., Defne Z., Deegan L. A., Eaton M. J., Ganju N. K., Hartley M., Johnson C., Mercer J., Ruskin K. J., Woodruff J. D., Yellen B. (2025). Distribution and disturbances of ditches across salt marshes of the Northeast U.S. with implications for management and restoration. Journal Of Environmental Management. 376:124444. doi: 10.1016/j.jenvman.2025.124444

Peredo E. L., Thomas S., Cardon Z. G. (2025). Draft genome sequence of Mycobacterium sp. SA01 isolated from Sporobolus alterniflorus seedlings collected in Cape Cod (USA). Microbiology Resource Announcements. 14:e01025-e01024. doi: 10.1128/mra.01025-24

Guimond J. A., Grande E., Michael H. A., Pratt D., Herndon E., Noyce G. L., Ward N. D., Forbrich I., Regier P., Berens M. J., Arora B. (2025). The hidden influence of terrestrial groundwater on salt marsh function and resilience. Nature Water. 3:157-166. doi: 10.1038/s44221-024-00384-6

Stegen J., Burgin A. J., Busch M. H., Fisher J. B., Ladau J., Abrahamson J., Kinsman-Costello L., Li L., Chen X., Datry T., McDowell N., Tatariw C., Braswell A., Deines J. M., Guimond J. A., Regier P., Rod K., Bam E. K. P., Fluet-Chouinard E., Forbrich I., Jaeger K. L., O'Meara T., Scheibe T., Seybold E., Sweetman J. N., Zheng J., Allen D. C., Herndon E., Middleton B. A., Painter S., Roche K., Scamardo J., Vander Vorste R., Boye K., Wohl E., Zimmer M., Hondula K., Laan M., Marshall A., Patel K. F. (2025). Reviews and syntheses: Variable inundation across Earth's terrestrial ecosystems. Biogeosciences. 22:995-1034. doi: 10.5194/bg-22-995-2025

Hopkinson C. S., Weston N. B., Vallino J. J., Garritt R. H., Forbrich I. (2025). Comparative Metabolism and Blue Carbon Sequestration of Two Wetland-Dominated Estuaries. Ocean-Land-Atmosphere Research. 4. doi: 10.34133/olar.0091

Simon S. A., Soares A. R., Bornemann T. L. V., Lange A., Griesdorn L., Fuentes A., Dieckmann M., Krok B. A., Ruff S. E., Hügler M., Moraru C., Probst A. J. (2025). Inferring replication states of bacteria and viruses in enrichment cultures via long-read sequencing. Isme Communications. 5:ycaf041. doi: 10.1093/ismeco/ycaf041

Vallino J. J., Ahern O. M., Huber J. A. Deriving microbial food web structure by maximizing entropy production over variable timescales. doi: 10.1101/2025.04.30.651452

Luo E., Pham N. D., Rogers T. J., Vallino J. J., Benner B. E., Trubl G., Huber J. A. Virus-mediated recycling of chemoautotrophic biomass. doi: 10.1101/2025.05.27.656380

Elkassas S. M., Fortunato C. S., Grim S. L., Butterfield D. A., Holden J. F., Vallino J. J., Algar C. K., Allen L. Z., Larson B. T., Proskurowski G., Reddington E., Stewart L. C., Topçuoğlu B., Huber J. A. Metabolic and Population Profiles of Active Subseafloor Autotrophs in Young Oceanic Crust at Deep-Sea Hydrothermal Vents. doi: 10.1101/2025.04.25.650746