Recent MBL Publications

(as of January 22, 2020)

Banks, S. M. L., Medeiros, A. T., McQuillan, M., Busch, D. J., Ibarraran-Viniegra, A. S., Sousa, R., Lafer, E. M., & Morgan, J. R. (2020). Hsc70 Ameliorates the Vesicle Recycling Defects Caused by Excess α-Synuclein at Synapses. eNeuro. doi: 10.1523/ENEURO.0448-19.2020

Bhatnagar, S., Cowley, E. S., Kopf, S. H., Pérez Castro, S., Kearney, S., Dawson, S. C., Hanselmann, K., & Ruff, S. E. (2020). Microbial community dynamics and coexistence in a sulfide-driven phototrophic bloom. Environmental Microbiome, 15(1). doi: 10.1186/s40793-019-0348-0

da Fonseca, R. R., Couto, A., Machado, A. M., Brejova, B., Albertin, C. B., Silva, F., Gardner, P., Baril, T., Hayward, A., Campos, A., Ribeiro, Â. M., Barrio-Hernandez, I., Hoving, H. J., Tafur-Jimenez, R., Chu, C., Frazão, B., Petersen, B., Peñaloza, F., Musacchia, F., Alexander, G. C., Osório, H., Winkelmann, I., Simakov, O., Rasmussen, S., Rahman, M. Z., Pisani, D., Vinther, J., Jarvis, E., Zhang, G., Strugnell, J. M., Castro, L. F. C., Fedrigo, O., Patricio, M., Li, Q., Rocha, S., Antunes, A., Wu, Y., Ma, B., Sanges, R., Vinar, T., Blagoev, B., Sicheritz-Ponten, T., Nielsen, R., & Gilbert, M. T. P. (2020). A draft genome sequence of the elusive giant squid, Architeuthis dux. GigaScience, 9(1). doi: 10.1093/gigascience/giz152

Perks, K. E., Krotinger, A., & Bodznick, D. (2020). A cerebellum-like circuit in the lateral line system of fish cancels mechanosensory input associated with its own movements. J Exp Biol. doi: 10.1242/jeb.204438

Wan, K. Y., Hürlimann, S. K., Fenix, A. M., McGillivary, R. M., Makushok, T., Burns, E., Sheung, J. Y., & Marshall, W. F. (2020). Reorganization of complex ciliary flows around regenerating Stentor coeruleus. Philosophical Transactions of the Royal Society B: Biological Sciences, 375(1792), 20190167. doi: 10.1098/rstb.2019.0167

Lundgren, S. N., Madan, J. C., Karagas, M. R., Morrison, H. G., Hoen, A. G., & Christensen, B. C. (2019). Microbial Communities in Human Milk Relate to Measures of Maternal Weight. Front Microbiol, 10, 2886. doi: 10.3389/fmicb.2019.02886

Mitchison, T. J. (2020). Shinya Inoué (1921–2019). Cell, 180(1), 2-5. doi: 10.1016/j.cell.2019.12.022

Pérez Castro, S., Esch, E. H., Eviner, V. T., Cleland, E. E., & Lipson, D. A. (2020). Exotic herbaceous species interact with severe drought to alter soil N cycling in a semi-arid shrubland. Geoderma, 361, 114111. doi: 10.1016/j.geoderma.2019.114111

Gilly, W. F., Renken, C., Rosenthal, J., & Kier, W. M. (2020). Specialization for rapid excitation in fast squid tentacle muscle involves action potentials absent in slow arm muscle. J Exp Biol. doi: 10.1242/jeb.218081

Huang, Y., Guo, H., Chen, X., Chen, Z., van der Tol, C., Zhou, Y., & Tang, J. (2019). Meteorological controls on evapotranspiration over a coastal salt marsh ecosystem under tidal influence. AGRICULTURAL AND FOREST METEOROLOGY, 279(UNSP 107755). doi: 10.1016/j.agrformet.2019.107755

Krehenwinkel, H., Pomerantz, A., & Prost, S. (2019). Genetic Biomonitoring and Biodiversity Assessment Using Portable Sequencing Technologies: Current Uses and Future Directions. Genes, 10(11). doi: 10.3390/genes10110858

Martiny, J. B. H., Whiteson, K. L., Bohannan, B. J. M., David, L. A., Hynson, N. A., McFall-Ngai, M., Rawls, J. F., Schmidt, T. M., Abdo, Z., Blaser, M. J., Bordenstein, S., Bréchot, C., Bull, C. T., Dorrestein, P., Eisen, J. A., Garcia-Pichel, F., Gilbert, J., Hofmockel, K. S., Holtz, M. L., Knight, R., Mark Welch, D. B., McDonald, D., Methé, B., Mouncey, N. J., Mueller, N. T., Pfister, C. A., Proctor, L., & Sachs, J. L. (2020). The emergence of microbiome centres. Nat Microbiol, 5(1), 2-3. doi: 10.1038/s41564-019-0644-x

Sharko, F. S., Nedoluzhko, A. V., Lê, B. M., Tsygankova, S. V., Boulygina, E. S., Rastorguev, S. M., Sokolov, A. S., Rodriguez, F., Mazur, A. M., Polilov, A. A., Benton, R., Evgen’ev, M. B., Arkhipova, I. R., Prokhortchouk, E. B., & Skryabin, K. G. (2019). A partial genome assembly of the miniature parasitoid wasp, Megaphragma amalphitanum. PLOS ONE, 14(12), e0226485. doi: 10.1371/journal.pone.0226485

Sieber, C. M. K., Paul, B. G., Castelle, C. J., Hu, P., Tringe, S. G., Valentine, D. L., Andersen, G. L., & Banfield, J. F. (2019). Unusual Metabolism and Hypervariation in the Genome of a Gracilibacterium (BD1-5) from an Oil-Degrading Community. MBIO, 10(6). doi: 10.1128/mBio.02128-19

Trötschel, C., Hamzeh, H., Alvarez, L., Pascal, R., Lavryk, F., Bönigk, W., Körschen, H. G., Müller, A., Poetsch, A., Rennhack, A., Gui, L., Nicastro, D., Strünker, T., Seifert, R., & Kaupp, U. B. (2019). Absolute proteomic quantification reveals design principles of sperm flagellar chemosensation. EMBO J, e102723. doi: 10.15252/embj.2019102723

Wan, K. Y., Hurlimann, S. K., Fenix, A. M., McGillivary, R. M., Makushok, T., Burns, E., Sheung, J. Y., & Marshall, W. F. (2020). Reorganization of complex ciliary flows around regenerating Stentor coeruleus. Philos Trans R Soc Lond B Biol Sci, 375(1792), 20190167. doi: 10.1098/rstb.2019.0167

Albertin, C. B., & Simakov, O. (2019). Cephalopod Biology: At the Intersection Between Genomic and Organismal Novelties. Annu Rev Anim Biosci. doi: 10.1146/annurev-animal-021419-083609

Liu, Z., Lu, X., An, S., Heskel, M., Yang, H., & Tang, J. (2019). Advantage of multi-band solar-induced chlorophyll fluorescence to derive canopy photosynthesis in a temperate forest. AGRICULTURAL AND FOREST METEOROLOGY, 279(UNSP 107691). doi: 10.1016/j.agrformet.2019.107691

Nakamura, M., Yoshida, H., Takahashi, E., Wlizla, M., Takebayashi-Suzuki, K., Horb, M. E., & Suzuki, A. (2019). The AP-1 transcription factor JunB functions in Xenopus tail regeneration by positively regulating cell proliferation. Biochem Biophys Res Commun. doi: 10.1016/j.bbrc.2019.11.060

Zhang, L., Zhou, L., Wei, J., Xu, H., Tang, Q., & Tang, J. (2019). Integrating cover crops with chicken grazing to improve soil nitrogen in rice fields and increase economic output. Sci Total Environ, 135218. doi: 10.1016/j.scitotenv.2019.135218

Kuehn, E., Stockinger, A. W., Girard, J., Raible, F., & Özpolat, B. D. (2019). A scalable culturing system for the marine annelid Platynereis dumerilii. PLOS ONE, 14(12), e0226156. doi: 10.1371/journal.pone.0226156

Northcutt, A. J., Kick, D. R., Otopalik, A. G., Goetz, B. M., Harris, R. M., Santin, J. M., Hofmann, H. A., Marder, E., & Schulz, D. J. (2019). Molecular profiling of single neurons of known identity in two ganglia from the crab Cancer borealis. Proc Natl Acad Sci U S A. doi: 10.1073/pnas.1911413116

Patino Vargas, M. I., Mesa Cadavid, M., Arenas Gomez, C. M., Diosa Arango, J., Restrepo Munera, L. M., & Becerra Colorado, N. Y. (2019). Polyplexes system to enhance the LL-37 antimicrobial peptide expression in human skin cells. Tissue Eng Part A. doi: 10.1089/ten.TEA.2019.0196

Du Clos, K. T., Dabiri, J. O., Costello, J. H., Colin, S. P., Morgan, J. R., Fogerson, S. M., & Gemmell, B. J. (2019). Thrust generation during steady swimming and acceleration from rest in anguilliform swimmers. J Exp Biol, 222(Pt 22). doi: 10.1242/jeb.212464

Hunter-Cevera, K. R., Neubert, M. G., Olson, R. J., Shalapyonok, A., Solow, A. R., & Sosik, H. M. (2019). Seasons of Syn. LIMNOLOGY AND OCEANOGRAPHY. doi: 10.1002/lno.11374

Koganti, L., Liu, J., DeMajewski, A., Agostini, M. A., Wong, T. W., Faber, D. S., & Zottoli, S. J. (2019). Invasion of microglia/macrophages and granulocytes into the Mauthner axon myelin sheath following spinal cord injury of the adult goldfish, Carassius auratus. J Morphol. doi: 10.1002/jmor.21086

Schlundt, C., Mark Welch, J. L., Knochel, A. M., Zettler, E. R., & Amaral-Zettler, L. A. (2019). Spatial structure in the “Plastisphere”: Molecular resources for imaging microscopic communities on plastic marine debris. Mol Ecol Resour. doi: 10.1111/1755-0998.13119

Wang, F., Lu, X., Sanders, C. J., & Tang, J. (2019). Tidal wetland resilience to sea level rise increases their carbon sequestration capacity in United States. Nat Commun, 10(1), 5434. doi: 10.1038/s41467-019-13294-z

Natali, S. M., Watts, J. D., Rogers, B. M., Potter, S., Ludwig, S. M., Selbmann, A. K., Sullivan, P. F., Abbott, B. W., Arndt, K. A., Birch, L., Bjorkman, M. P., Bloom, A. A., Celis, G., Christensen, T. R., Christiansen, C. T., Commane, R., Cooper, E. J., Crill, P., Czimczik, C., Davydov, S., Du, J., Egan, J. E., Elberling, B., Euskirchen, E. S., Friborg, T., Genet, H., Goeckede, M., Goodrich, J. P., Grogan, P., Helbig, M., Jafarov, E. E., Jastrow, J. D., Kalhori, A. A. M., Kim, Y., Kimball, J. S., Kutzbach, L., Lara, M. J., Larsen, K. S., Lee, B. Y., Liu, Z., Loranty, M. M., Lund, M., Lupascu, M., Madani, N., Malhotra, A., Matamala, R., McFarland, J., McGuire, A. D., Michelsen, A., Minions, C., Oechel, W. C., Olefeldt, D., Parmentier, F. J. W., Pirk, N., Poulter, B., Quinton, W., Rezanezhad, F., Risk, D., Sachs, T., Schaefer, K., Schmidt, N. M., Schuur, E. A. G., Semenchuk, P. R., Shaver, G., Sonnentag, O., Starr, G., Treat, C. C., Waldrop, M. P., Wang, Y., Welker, J., Wille, C., Xu, X., Zhang, Z., Zhuang, Q., & Zona, D. (2019). Large loss of CO2 in winter observed across the northern permafrost region. NATURE CLIMATE CHANGE, 9(11), 852-+. doi: 10.1038/s41558-019-0592-8

Carey, J. C., Abbott, B. W., & Rocha, A. V. (2019). Plant Uptake Offsets Silica Release From a Large Arctic Tundra Wildfire. EARTHS FUTURE, 7(9), 1044-1057. doi: 10.1029/2019EF001149

Dai, Z., Sevillano-Rivera, M. C., Calus, S. T., Bautista-de los Santos, Q. M., Eren, A. M., van der Wielen, P. W. J. J., Ijaz, U. Z., & Pinto, A. J. (2019). Disinfection exhibits systematic impacts on the drinking water microbiome. bioRxiv, 828970. doi: 10.1101/828970

Marian, J. E. A. R., Apostólico, L. H., Chiao, C. C., Hanlon, R. T., Hirohashi, N., Iwata, Y., Mather, J., Sato, N., & Shaw, P. W. (2019). Male Alternative Reproductive Tactics and Associated Evolution of Anatomical Characteristics in Loliginid Squid. FRONTIERS IN PHYSIOLOGY, 10. doi: 10.3389/fphys.2019.01281

Mitchison, T. J., & Field, C. M. (2019). Toward synthetic cells. SCIENCE, 366(6465), 569-570. doi: 10.1126/science.aaz5635

Ritschard, E. A., Whitelaw, B., Albertin, C. B., Cooke, I. R., Strugnell, J. M., & Simakov, O. (2019). Coupled Genomic Evolutionary Histories as Signatures of Organismal Innovations in Cephalopods: Co-evolutionary Signatures Across Levels of Genome Organization May Shed Light on Functional Linkage and Origin of Cephalopod Novelties. Bioessays, e1900073. doi: 10.1002/bies.201900073

Bernhard, A. E., Chelsky, A., Giblin, A. E., & Roberts, B. J. (2019). Influence of Local and Regional Drivers on Spatial and Temporal Variation of Ammonia-Oxidizing Communities in Gulf of Mexico Salt Marshes. Environ Microbiol Rep. doi: 10.1111/1758-2229.12802

Martik, M. L., Gandhi, S., Uy, B. R., Gillis, J. A., Green, S. A., Simoes-Costa, M., & Bronner, M. E. (2019). Evolution of the new head by gradual acquisition of neural crest regulatory circuits. NATURE. doi: 10.1038/s41586-019-1691-4

Rawlinson, K. A., Lapraz, F., Ballister, E. R., Terasaki, M., Rodgers, J., McDowell, R. J., Girstmair, J., Criswell, K. E., Boldogkoi, M., Simpson, F., Goulding, D., Cormie, C., Hall, B., Lucas, R. J., & Telford, M. J. (2019). Extraocular, rod-like photoreceptors in a flatworm express xenopsin photopigment. Elife, 8. doi: 10.7554/eLife.45465

Trigodet, F., Larche, N., Morrison, H. G., Maignien, L., & Thierry, D. (2019). Influence of dissolved oxygen content on the bacteria-induced ennoblement of stainless steels in seawater and its consequence on the localized corrosion risk. MATERIALS AND CORROSION-WERKSTOFFE UND KORROSION. doi: 10.1002/maco.201911225

Chanaday, N. L., Cousin, M. A., Milosevic, I., Watanabe, S., & Morgan, J. R. (2019). The Synaptic Vesicle Cycle Revisited: New Insights into the Modes and Mechanisms. J Neurosci, 39(42), 8209-8216. doi: 10.1523/JNEUROSCI.1158-19.2019

Estrada-Gomez, S., Cardoso, F. C., Vargas-Munoz, L. J., Quintana-Castillo, J. C., Gomez, C. M. A., Pineda, S. S., & Saldarriaga-Cordoba, M. M. (2019). Venomic, Transcriptomic, and Bioactivity Analyses of Pamphobeteus verdolaga Venom Reveal Complex Disulfide-Rich Peptides That Modulate Calcium Channels. Toxins, 11(9). doi: 10.3390/toxins11090496

Bulseco, A. N., Vineis, J. H., Murphy, A. E., Spivak, A. C., Giblin, A. E., Tucker, J., & Bowen, J. L. (2019). Metagenomics coupled with biogeochemical rates measurements provide evidence that nitrate addition stimulates respiration in salt marsh sediments. Limnol Oceanogr, 0(0). doi: 10.1002/lno.11326

Kim, S., Kalappurakkal, J. M., Mayor, S., & Rosen, M. K. (2019). Phosphorylation of Nephrin induces phase separated domains that move through actomyosin contraction. Mol Biol Cell, mbcE18120823. doi: 10.1091/mbc.E18-12-0823

Mitchison-Field, L. M. Y., Vargas-Muñiz, J. M., Stormo, B. M., Vogt, E. J. D., Van Dierdonck, S., Pelletier, J. F., Ehrlich, C., Lew, D. J., Field, C. M., & Gladfelter, A. S. (2019). Unconventional Cell Division Cycles from Marine-Derived Yeasts. Curr Biol. doi: 10.1016/j.cub.2019.08.050

Snead, W. T., & Gladfelter, A. S. (2019). The Control Centers of Biomolecular Phase Separation: How Membrane Surfaces, PTMs, and Active Processes Regulate Condensation. Mol Cell. doi: 10.1016/j.molcel.2019.09.016

Williams, L. E., Cullen, N., DeGiorgis, J. A., Martinez, K. J., Mellone, J., Oser, M., Wang, J., & Zhang, Y. (2019). Variation in genome content and predatory phenotypes between Bdellovibrio sp. NC01 isolated from soil and B. bacteriovorus type strain HD100. Microbiology. doi: 10.1099/mic.0.000861

Bono, L. M., Orton, R. J., Peredo, E. L., Morrison, H. G., Sistrom, M., Simmons, S., & Turner, P. E. (2019). Spatiotemporal dynamics of RNA virus diversity in a phyllosphere microbial community. bioRxiv. doi: 10.1101/772475

Theroux, S., Huang, Y., Toney, J. L., Andersen, R., Nyren, P., Bohn, R., Salacup, J., Murphy, L., & Amaral-Zettler, L. (2019). Successional blooms of alkenone-producing haptophytes in Lake George, North Dakota: Implications for continental paleoclimate reconstructions. LIMNOLOGY AND OCEANOGRAPHY. doi: 10.1002/lno.11311

Yang, H., Chen, X., Tang, J., Zhang, L., Zhang, C., Perry, D. C., & You, W. (2019). External carbon addition increases nitrate removal and decreases nitrous oxide emission in a restored wetland. ECOLOGICAL ENGINEERING, 138, 200-208. doi: 10.1016/j.ecoleng.2019.07.021

Bisht, J., LeValley, P., Noren, B., McBride, R., Kharkar, P., Kloxin, A., Gatlin, J., & Oakey, J. (2019). Light-inducible activation of cell cycle progression in Xenopus egg extracts under microfluidic confinement. Lab Chip. doi: 10.1039/c9lc00569b

Geffeney, S. L., Williams, B. L., Rosenthal, J. J. C., Birk, M. A., Felkins, J., Wisell, C. M., Curry, E. R., & Hanifin, C. T. (2019). Convergent and parallel evolution in a voltage-gated sodium channel underlies TTX-resistance in the Greater Blue-ringed Octopus: Hapalochlaena lunulata. Toxicon, 170, 77-84. doi: 10.1016/j.toxicon.2019.09.013