Recent MBL Publications

(as of December 9, 2019)

Kuehn, E., Stockinger, A. W., Girard, J., Raible, F., & Özpolat, B. D. (2019). A scalable culturing system for the marine annelid Platynereis dumerilii. PLOS ONE, 14(12), e0226156. doi: 10.1371/journal.pone.0226156

Northcutt, A. J., Kick, D. R., Otopalik, A. G., Goetz, B. M., Harris, R. M., Santin, J. M., Hofmann, H. A., Marder, E., & Schulz, D. J. (2019). Molecular profiling of single neurons of known identity in two ganglia from the crab Cancer borealis. Proc Natl Acad Sci U S A. doi: 10.1073/pnas.1911413116

Patino Vargas, M. I., Mesa Cadavid, M., Arenas Gomez, C. M., Diosa Arango, J., Restrepo Munera, L. M., & Becerra Colorado, N. Y. (2019). Polyplexes system to enhance the LL-37 antimicrobial peptide expression in human skin cells. Tissue Eng Part A. doi: 10.1089/ten.TEA.2019.0196

Du Clos, K. T., Dabiri, J. O., Costello, J. H., Colin, S. P., Morgan, J. R., Fogerson, S. M., & Gemmell, B. J. (2019). Thrust generation during steady swimming and acceleration from rest in anguilliform swimmers. J Exp Biol, 222(Pt 22). doi: 10.1242/jeb.212464

Hunter-Cevera, K. R., Neubert, M. G., Olson, R. J., Shalapyonok, A., Solow, A. R., & Sosik, H. M. (2019). Seasons of Syn. LIMNOLOGY AND OCEANOGRAPHY. doi: 10.1002/lno.11374

Koganti, L., Liu, J., DeMajewski, A., Agostini, M. A., Wong, T. W., Faber, D. S., & Zottoli, S. J. (2019). Invasion of microglia/macrophages and granulocytes into the Mauthner axon myelin sheath following spinal cord injury of the adult goldfish, Carassius auratus. J Morphol. doi: 10.1002/jmor.21086

Schlundt, C., Mark Welch, J. L., Knochel, A. M., Zettler, E. R., & Amaral-Zettler, L. A. (2019). Spatial structure in the “Plastisphere”: Molecular resources for imaging microscopic communities on plastic marine debris. Mol Ecol Resour. doi: 10.1111/1755-0998.13119

Wang, F., Lu, X., Sanders, C. J., & Tang, J. (2019). Tidal wetland resilience to sea level rise increases their carbon sequestration capacity in United States. Nat Commun, 10(1), 5434. doi: 10.1038/s41467-019-13294-z

Natali, S. M., Watts, J. D., Rogers, B. M., Potter, S., Ludwig, S. M., Selbmann, A. K., Sullivan, P. F., Abbott, B. W., Arndt, K. A., Birch, L., Bjorkman, M. P., Bloom, A. A., Celis, G., Christensen, T. R., Christiansen, C. T., Commane, R., Cooper, E. J., Crill, P., Czimczik, C., Davydov, S., Du, J., Egan, J. E., Elberling, B., Euskirchen, E. S., Friborg, T., Genet, H., Goeckede, M., Goodrich, J. P., Grogan, P., Helbig, M., Jafarov, E. E., Jastrow, J. D., Kalhori, A. A. M., Kim, Y., Kimball, J. S., Kutzbach, L., Lara, M. J., Larsen, K. S., Lee, B. Y., Liu, Z., Loranty, M. M., Lund, M., Lupascu, M., Madani, N., Malhotra, A., Matamala, R., McFarland, J., McGuire, A. D., Michelsen, A., Minions, C., Oechel, W. C., Olefeldt, D., Parmentier, F. J. W., Pirk, N., Poulter, B., Quinton, W., Rezanezhad, F., Risk, D., Sachs, T., Schaefer, K., Schmidt, N. M., Schuur, E. A. G., Semenchuk, P. R., Shaver, G., Sonnentag, O., Starr, G., Treat, C. C., Waldrop, M. P., Wang, Y., Welker, J., Wille, C., Xu, X., Zhang, Z., Zhuang, Q., & Zona, D. (2019). Large loss of CO2 in winter observed across the northern permafrost region. NATURE CLIMATE CHANGE, 9(11), 852-+. doi: 10.1038/s41558-019-0592-8

Carey, J. C., Abbott, B. W., & Rocha, A. V. (2019). Plant Uptake Offsets Silica Release From a Large Arctic Tundra Wildfire. EARTHS FUTURE, 7(9), 1044-1057. doi: 10.1029/2019EF001149

Dai, Z., Sevillano-Rivera, M. C., Calus, S. T., Bautista-de los Santos, Q. M., Eren, A. M., van der Wielen, P. W. J. J., Ijaz, U. Z., & Pinto, A. J. (2019). Disinfection exhibits systematic impacts on the drinking water microbiome. bioRxiv, 828970. doi: 10.1101/828970

Marian, J. E. A. R., Apostólico, L. H., Chiao, C. C., Hanlon, R. T., Hirohashi, N., Iwata, Y., Mather, J., Sato, N., & Shaw, P. W. (2019). Male Alternative Reproductive Tactics and Associated Evolution of Anatomical Characteristics in Loliginid Squid. FRONTIERS IN PHYSIOLOGY, 10. doi: 10.3389/fphys.2019.01281

Mitchison, T. J., & Field, C. M. (2019). Toward synthetic cells. SCIENCE, 366(6465), 569-570. doi: 10.1126/science.aaz5635

Ritschard, E. A., Whitelaw, B., Albertin, C. B., Cooke, I. R., Strugnell, J. M., & Simakov, O. (2019). Coupled Genomic Evolutionary Histories as Signatures of Organismal Innovations in Cephalopods: Co-evolutionary Signatures Across Levels of Genome Organization May Shed Light on Functional Linkage and Origin of Cephalopod Novelties. Bioessays, e1900073. doi: 10.1002/bies.201900073

Bernhard, A. E., Chelsky, A., Giblin, A. E., & Roberts, B. J. (2019). Influence of Local and Regional Drivers on Spatial and Temporal Variation of Ammonia-Oxidizing Communities in Gulf of Mexico Salt Marshes. Environ Microbiol Rep. doi: 10.1111/1758-2229.12802

Martik, M. L., Gandhi, S., Uy, B. R., Gillis, J. A., Green, S. A., Simoes-Costa, M., & Bronner, M. E. (2019). Evolution of the new head by gradual acquisition of neural crest regulatory circuits. NATURE. doi: 10.1038/s41586-019-1691-4

Rawlinson, K. A., Lapraz, F., Ballister, E. R., Terasaki, M., Rodgers, J., McDowell, R. J., Girstmair, J., Criswell, K. E., Boldogkoi, M., Simpson, F., Goulding, D., Cormie, C., Hall, B., Lucas, R. J., & Telford, M. J. (2019). Extraocular, rod-like photoreceptors in a flatworm express xenopsin photopigment. Elife, 8. doi: 10.7554/eLife.45465

Trigodet, F., Larche, N., Morrison, H. G., Maignien, L., & Thierry, D. (2019). Influence of dissolved oxygen content on the bacteria-induced ennoblement of stainless steels in seawater and its consequence on the localized corrosion risk. MATERIALS AND CORROSION-WERKSTOFFE UND KORROSION. doi: 10.1002/maco.201911225

Chanaday, N. L., Cousin, M. A., Milosevic, I., Watanabe, S., & Morgan, J. R. (2019). The Synaptic Vesicle Cycle Revisited: New Insights into the Modes and Mechanisms. J Neurosci, 39(42), 8209-8216. doi: 10.1523/JNEUROSCI.1158-19.2019

Estrada-Gomez, S., Cardoso, F. C., Vargas-Munoz, L. J., Quintana-Castillo, J. C., Gomez, C. M. A., Pineda, S. S., & Saldarriaga-Cordoba, M. M. (2019). Venomic, Transcriptomic, and Bioactivity Analyses of Pamphobeteus verdolaga Venom Reveal Complex Disulfide-Rich Peptides That Modulate Calcium Channels. Toxins, 11(9). doi: 10.3390/toxins11090496

Bulseco, A. N., Vineis, J. H., Murphy, A. E., Spivak, A. C., Giblin, A. E., Tucker, J., & Bowen, J. L. (2019). Metagenomics coupled with biogeochemical rates measurements provide evidence that nitrate addition stimulates respiration in salt marsh sediments. Limnol Oceanogr, 0(0). doi: 10.1002/lno.11326

Kim, S., Kalappurakkal, J. M., Mayor, S., & Rosen, M. K. (2019). Phosphorylation of Nephrin induces phase separated domains that move through actomyosin contraction. Mol Biol Cell, mbcE18120823. doi: 10.1091/mbc.E18-12-0823

Mitchison-Field, L. M. Y., Vargas-Muñiz, J. M., Stormo, B. M., Vogt, E. J. D., Van Dierdonck, S., Pelletier, J. F., Ehrlich, C., Lew, D. J., Field, C. M., & Gladfelter, A. S. (2019). Unconventional Cell Division Cycles from Marine-Derived Yeasts. Curr Biol. doi: 10.1016/j.cub.2019.08.050

Snead, W. T., & Gladfelter, A. S. (2019). The Control Centers of Biomolecular Phase Separation: How Membrane Surfaces, PTMs, and Active Processes Regulate Condensation. Mol Cell. doi: 10.1016/j.molcel.2019.09.016

Williams, L. E., Cullen, N., DeGiorgis, J. A., Martinez, K. J., Mellone, J., Oser, M., Wang, J., & Zhang, Y. (2019). Variation in genome content and predatory phenotypes between Bdellovibrio sp. NC01 isolated from soil and B. bacteriovorus type strain HD100. Microbiology. doi: 10.1099/mic.0.000861

Bono, L. M., Orton, R. J., Peredo, E. L., Morrison, H. G., Sistrom, M., Simmons, S., & Turner, P. E. (2019). Spatiotemporal dynamics of RNA virus diversity in a phyllosphere microbial community. bioRxiv. doi: 10.1101/772475

Theroux, S., Huang, Y., Toney, J. L., Andersen, R., Nyren, P., Bohn, R., Salacup, J., Murphy, L., & Amaral-Zettler, L. (2019). Successional blooms of alkenone-producing haptophytes in Lake George, North Dakota: Implications for continental paleoclimate reconstructions. LIMNOLOGY AND OCEANOGRAPHY. doi: 10.1002/lno.11311

Yang, H., Chen, X., Tang, J., Zhang, L., Zhang, C., Perry, D. C., & You, W. (2019). External carbon addition increases nitrate removal and decreases nitrous oxide emission in a restored wetland. ECOLOGICAL ENGINEERING, 138, 200-208. doi: 10.1016/j.ecoleng.2019.07.021

Bisht, J., LeValley, P., Noren, B., McBride, R., Kharkar, P., Kloxin, A., Gatlin, J., & Oakey, J. (2019). Light-inducible activation of cell cycle progression in Xenopus egg extracts under microfluidic confinement. Lab Chip. doi: 10.1039/c9lc00569b

Geffeney, S. L., Williams, B. L., Rosenthal, J. J. C., Birk, M. A., Felkins, J., Wisell, C. M., Curry, E. R., & Hanifin, C. T. (2019). Convergent and parallel evolution in a voltage-gated sodium channel underlies TTX-resistance in the Greater Blue-ringed Octopus: Hapalochlaena lunulata. Toxicon, 170, 77-84. doi: 10.1016/j.toxicon.2019.09.013

Gewirtzman, J., Tang, J., Melillo, J. M., Werner, W. J., Kurtz, A. C., Fulweiler, R. W., & Carey, J. C. (2019). Soil Warming Accelerates Biogeochemical Silica Cycling in a Temperate Forest. FRONTIERS IN PLANT SCIENCE, 10(ARTN 1097). doi: 10.3389/fpls.2019.01097

Barton, J. A., Hutson, K. S., Bourne, D. G., Humphrey, C., Dybala, C., & Rawlinson, K. A. (2019). The Life Cycle of the Acropora Coral-Eating Flatworm (AEFW), Prosthiostomum acroporae; The Influence of Temperature and Management Guidelines. Frontiers in Marine Science, 6. doi: 10.3389/fmars.2019.00524

Gibson, A., Laubichler, M. D., & Maienschein, J. (2019). Introduction. ISIS, 110(3), 497-501. doi: 10.1086/705542

Laubichler, M. D., Maienschein, J., & Renn, J. (2019). Computational History of Knowledge: Challenges and Opportunities. ISIS, 110(3), 502-512. doi: 10.1086/705544

Pedrosa-Pàmies, R., Conte, M. H., Weber, J. C., & Johnson, R. (2019). Hurricanes Enhance Labile Carbon Export to the Deep Ocean. GEOPHYSICAL RESEARCH LETTERS, 0(0). doi: 10.1029/2019GL083719

Rossetti, B. J., Wilbert, S. A., Mark Welch, J. L., Borisy, G. G., & Nagy, J. G. (2019). Semi-blind sparse affine spectral unmixing of autofluorescence-contaminated micrographs. Bioinformatics. doi: 10.1093/bioinformatics/btz674

Yeoman, C. J., Brutscher, L. M., Esen, O. C., Ibaoglu, F., Fowler, C., Eren, A. M., Wanner, K., & Weaver, D. K. (2019). Genome-resolved insights into a novel Spiroplasma symbiont of the Wheat Stem Sawfly (Cephus cinctus). PeerJ, 7(ARTN e7548). doi: 10.7717/peerj.7548

Delmont, T. O., Kiefl, E., Kilinc, O., Esen, O. C., Uysal, I., Rappé, M. S., Giovannoni, S., & Eren, A. M. (2019). Single-amino acid variants reveal evolutionary processes that shape the biogeography of a global SAR11 subclade. Elife, 8. doi: 10.7554/eLife.46497

Noree, C., Begovich, K., Samilo, D., Broyer, R., Monfort, E., & Wilhelm, J. E. (2019). A quantitative screen for metabolic enzyme structures reveals patterns of assembly across the yeast metabolic network. Mol Biol Cell, mbcE19040224. doi: 10.1091/mbc.E19-04-0224

Sutherland, K. R., Gemmell, B. J., Colin, S. P., & Costello, J. H. (2019). Maneuvering Performance in the Colonial Siphonophore, Nanomia bijuga. Biomimetics (Basel), 4(3). doi: 10.3390/biomimetics4030062

Cavicchioli, R., Ripple, W. J., Timmis, K. N., Azam, F., Bakken, L. R., Baylis, M., Behrenfeld, M. J., Boetius, A., Boyd, P. W., Classen, A. T., Crowther, T. W., Danovaro, R., Foreman, C. M., Huisman, J., Hutchins, D. A., Jansson, J. K., Karl, D. M., Koskella, B., Welch, D. B. M., Martiny, J. B. H., Moran, M. A., Orphan, V. J., Reay, D. S., Remais, J. V., Rich, V. I., Singh, B. K., Stein, L. Y., Stewart, F. J., Sullivan, M. B., van Oppen, M. J. H., Weaver, S. C., Webb, E. A., & Webster, N. S. (2019). Scientists’ warning to humanity: microorganisms and climate change. NATURE REVIEWS MICROBIOLOGY, 17(9), 569-586. doi: 10.1038/s41579-019-0222-5

Sánchez-García, M. A., Zottoli, S. J., & Roberson, L. M. (2019). Hypoxia Has a Lasting Effect on Fast-Startle Behavior of the Tropical Fish Haemulon plumieri. Biol Bull, 237(1), 48-62. doi: 10.1086/704337

Sterner, Z. R., Rankin, S. A., Wlizla, M., Choi, J. A., Luedeke, D. M., Zorn, A. M., & Buchholz, D. R. (2019). Novel vectors for functional interrogation of Xenopus ORFeome coding sequences. Genesis. doi: 10.1002/dvg.23329

Song, J., Wan, S., Piao, S., Knapp, A. K., Classen, A. T., Vicca, S., Ciais, P., Hovenden, M. J., Leuzinger, S., Beier, C., Kardol, P., Xia, J., Liu, Q., Ru, J., Zhou, Z., Luo, Y., Guo, D., Adam Langley, J., Zscheischler, J., Dukes, J. S., Tang, J., Chen, J., Hofmockel, K. S., Kueppers, L. M., Rustad, L., Liu, L., Smith, M. D., Templer, P. H., Quinn Thomas, R., Norby, R. J., Phillips, R. P., Niu, S., Fatichi, S., Wang, Y., Shao, P., Han, H., Wang, D., Lei, L., Wang, J., Li, X., Zhang, Q., Li, X., Su, F., Liu, B., Yang, F., Ma, G., Li, G., Liu, Y., Liu, Y., Yang, Z., Zhang, K., Miao, Y., Hu, M., Yan, C., Zhang, A., Zhong, M., Hui, Y., Li, Y., & Zheng, M. (2019). A meta-analysis of 1,119 manipulative experiments on terrestrial carbon-cycling responses to global change. Nat Ecol Evol. doi: 10.1038/s41559-019-0958-3

Chandler, T., Shroff, H., Oldenbourg, R., & La Riviere, P. (2019). Spatio-angular Fluorescence microscopy I. Basic theory. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA A-OPTICS IMAGE SCIENCE AND VISION, 36(8), 1334-1345. doi: 10.1364/JOSAA.36.001334

Chandler, T., Shroff, H., Oldenbourg, R., & La Riviere, P. (2019). Spatio-angular fluorescence microscopy II. Paraxial 4f imaging. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA A-OPTICS IMAGE SCIENCE AND VISION, 36(8), 1346-1360. doi: 10.1364/JOSAA.36.001346

Hale, M. E. (2019). Toward Diversification of Species Models in Neuroscience. Brain Behav Evol, 93(2-3), 166-168. doi: 10.1159/000500499

Kuehn, E., Stockinger, A. W., Girard, J., Raible, F., & Özpolat, B. D. (2019). A scalable culturing system for the marine annelid Platynereis dumerilii. doi: 10.1101/714238

Mayes, M., Melillo, J., Neill, C., Palm, C., Mustard, J., & Nyadzi, G. (2019). Nitrogen Cycle Patterns During Forest Regrowth in an African Miombo woodland Landscape. JOURNAL OF GEOPHYSICAL RESEARCH-BIOGEOSCIENCES, 124(6), 1591-1603. doi: 10.1029/2018JG004803

Virgirinia, R. P., Jahan, N., Okada, M., Takebayashi-Suzuki, K., Yoshida, H., Nakamura, M., Akao, H., Yoshimoto, Y., Fatchiyah, F., Ueno, N., & Suzuki, A. (2019). Cdc2-like kinase 2 (Clk2) promotes early neural development in Xenopus embryos. Development Growth & Differentiation. doi: 10.1111/dgd.12619