Recent MBL Publications

(as of February 12, 2019)

Bennice, C. O., Rayburn, A. P., Brooks, W. R., & Hanlon, R. T. (2019). Fine-scale habitat partitioning facilitates sympatry between two octopus species in a shallow Florida lagoon. MARINE ECOLOGY PROGRESS SERIES, 609, 151-161. doi: 10.3354/meps12845

Glodzik, L., Rusinek, H., Tsui, W., Pirraglia, E., Kim, H. J., Deshpande, A., Li, Y., Storey, P., Randall, C., Chen, J. Y., Osorio, R. S., Butler, T., Tanzi, E., McQuillan, M., Harvey, P., Williams, S. K., Ogedegbe, G., Babb, J. S., & de Leon, M. J. (2019). Different Relationship Between Systolic Blood Pressure and Cerebral Perfusion in Subjects With and Without Hypertension. Hypertension, 73(1), 197-205. doi: 10.1161/HYPERTENSIONAHA.118.11233

Otopalik, A. G., Pipkin, J., & Marder, E. (2019). Neuronal morphologies built for reliable physiology in a rhythmic motor circuit. Elife, 8. doi: 10.7554/eLife.41728

Richter, N., Longo, W. M., George, S., Shipunova, A., Huang, Y., & Amaral-Zettler, L. (2019). Phylogenetic diversity in freshwater-dwelling Isochrysidales haptophytes with implications for alkenone production. Geobiology. doi: 10.1111/gbi.12330

Battefeld, A., Popovic, M. A., van der Werf, D., & Kole, M. H. P. (2019). A Versatile and Open-Source Rapid LED Switching System for One-Photon Imaging and Photo-Activation. FRONTIERS IN CELLULAR NEUROSCIENCE, 12. doi: 10.3389/fncel.2018.00530

Hanslik, K. L., Allen, S. R., Harkenrider, T. L., Fogerson, S. M., Guadarrama, E., & Morgan, J. R. (2019). Regenerative capacity in the lamprey spinal cord is not altered after a repeated transection. PLOS ONE, 14(1), e0204193. doi: 10.1371/journal.pone.0204193

Youn, S., Okinaka, C., & Mäthger, L. M. (2019). Elaborate pupils in skates may help camouflage the eye. J Exp Biol. doi: 10.1242/jeb.195966

Alberti, S., Gladfelter, A., & Mittag, T. (2019). Considerations and Challenges in Studying Liquid-Liquid Phase Separation and Biomolecular Condensates. Cell, 176(3), 419-434. doi: 10.1016/j.cell.2018.12.035

Bock, M. J., Jarvis, G. C., Corey, E. L., Stone, E. E., & Gribble, K. E. (2019). Maternal age alters offspring lifespan, fitness, and lifespan extension under caloric restriction: Supplementary Information. doi: 10.1101/527770

Tan, S., Chen, B., Zheng, H., Xu, F., Xu, H., Wei, J., Huang, H., & Tang, J. (2019). Effects of cultivation techniques on CH4 emissions, net ecosystem production, and rice yield in a paddy ecosystem. ATMOSPHERIC POLLUTION RESEARCH, 10(1), 274-282. doi: 10.1016/j.apr.2018.08.007

Chandler, T., Shroff, H., Oldenbourg, R., & Rivière, P. L. (2019). Spatio-angular fluorescence microscopy II. Paraxial 4f imaging. doi: https://arxiv.org/pdf/1901.01181v1.pdf

Wishner, K. F., Seibel, B. A., Roman, C., Deutsch, C., Outram, D., Shaw, C. T., Birk, M. A., Mislan, K. A. S., Adams, T. J., Moore, D., & Riley, S. (2018). Ocean deoxygenation and zooplankton: Very small oxygen differences matter. Science Advances, 4(12). doi: 10.1126/sciadv.aau5180

Allard, C. A. H., Decker, F., Weiner, O. D., Toettcher, J. E., & Graziano, B. R. (2018). A size-invariant bud-duration timer enables robustness in yeast cell size control. PLOS ONE, 13(12), e0209301. doi: 10.1371/journal.pone.0209301

Chandler, T., Shroff, H., Oldenbourg, R., & Rivière, P. L. (2018). Spatio-angular fluorescence microscopy I. Basic theory.

Glodzik, L., Rusinek, H., Tsui, W., Pirraglia, E., Kim, H.-J., Deshpande, A., Li, Y., Storey, P., Randall, C., Chen, J., Osorio Ricardo, S., Butler, T., Tanzi, E., McQuillan, M., Harvey, P., Williams Stephen, K., Ogedegbe, G., Babb James, S., & de Leon Mony, J. (2019). Different Relationship Between Systolic Blood Pressure and Cerebral Perfusion in Subjects With and Without Hypertension. Hypertension, 73(1), 197-205. doi: 10.1161/HYPERTENSIONAHA.118.11233

Hubbard, C. J., Li, B., McMinn, R., Brock, M. T., Maignien, L., Ewers, B. E., Kliebenstein, D., & Weinig, C. (2018). The effect of rhizosphere microbes outweighs host plant genetics in reducing insect herbivory. Mol Ecol. doi: 10.1111/mec.14989

Pedrosa-Pamies, R., Conte, M. H., Weber, J. C., & Johnson, R. (2018). Carbon cycling in the Sargasso Sea water column: Insights from lipid biomarkers in suspended particles. PROGRESS IN OCEANOGRAPHY, 168, 248-278. doi: 10.1016/j.pocean.2018.08.005

Zheng, H., Wang, X., Li, Y., Huang, G., Tang, Q., & Tang, J. (2018). Contributions of photosynthetic organs to the seed yield of hybrid rice: the effects of gibberellin application examined by carbon isotope technology. SEED SCIENCE AND TECHNOLOGY, 46(3), 533-546. doi: 10.15258/sst.2018.46.3.10

Edzuka, T., & Goshima, G. (2018). Drosophila kinesin-8 stabilizes the kinetochore-microtubule interaction. J Cell Biol. doi: 10.1083/jcb.201807077

Faber, D. S., & Pereda, A. E. (2018). Two Forms of Electrical Transmission Between Neurons. Frontiers in Molecular Neuroscience, 11. doi: 10.3389/fnmol.2018.00427

Montiel-Gonzalez, M. F., Diaz Quiroz, J. F., & Rosenthal, J. J. C. (2018). Current strategies for Site-Directed RNA Editing using ADARs. Methods. doi: 10.1016/j.ymeth.2018.11.016

Navarro, G., Sharma, A., Dugas, L. R., Forrester, T., Gilbert, J. A., & Layden, B. T. (2018). Gut microbial features can predict host phenotype response to protein deficiency. Physiol Rep, 6(23), e13932. doi: 10.14814/phy2.13932

Schwartz, M. H., Wang, H., Pan, J. N., Clark, W. C., Cui, S., Eckwahl, M. J., Pan, D. W., Parisien, M., Owens, S. M., Cheng, B. L., Martinez, K., Xu, J., Chang, E. B., Pan, T., & Eren, A. M. (2018). Microbiome characterization by high-throughput transfer RNA sequencing and modification analysis. Nat Commun, 9(1), 5353. doi: 10.1038/s41467-018-07675-z

Wang, X., Li, Y., Chen, W., Shi, H., Eren, A. M., Morozov, A., He, C., Luo, G. Z., & Pan, T. (2018). Transcriptome-wide reprogramming of N6-methyladenosine modification by the mouse microbiome. Cell Res. doi: 10.1038/s41422-018-0127-2

Carey, J. C., Kroeger, K. D., Zafari, B., & Tang, J. (2018). Passive experimental warming decouples air and sediment temperatures in a salt marsh. Limnology and Oceanography-Methods, 16(10), 640-648. doi: 10.1002/lom3.10270

Daniels, W. C., Huang, Y., Russell, J. M., & Giblin, A. E. (2018). Effect of continuous light on leaf wax isotope ratios in Betula nana and Eriophorum vaginatum: implications for Arctic paleoclimate reconstructions. Organic Geochemistry, 125, 70-81. doi: 10.1016/j.orggeochem.2018.08.008

Gribble, K. E., Moran, B. M., Jones, S., Corey, E. L., & Mark Welch, D. B. (2018). Congeneric variability in lifespan extension and onset of senescence suggest active regulation of aging in response to low temperature. Exp Gerontol, 114, 99-106. doi: 10.1016/j.exger.2018.10.023

Howard, E. M., Forbrich, I., Giblin, A. E., Lott, D. E., Cahill, K. L., & Stanley, R. H. R. (2018). Using Noble Gases to Compare Parameterizations of Air-Water Gas Exchange and to Constrain Oxygen Losses by Ebullition in a Shallow Aquatic Environment. JOURNAL OF GEOPHYSICAL RESEARCH-BIOGEOSCIENCES, 123(9), 2711-2726. doi: 10.1029/2018JG004441

Hubbard, C. J., Brock, M. T., van Diepen, L. T., Maignien, L., Ewers, B. E., & Weinig, C. (2018). The plant circadian clock influences rhizosphere community structure and function. ISME J, 12(2), 400-410. doi: 10.1038/ismej.2017.172

Iglesias, T. L., Boal, J. G., Frank, M. G., Zeil, J., & Hanlon, R. T. (2018). Cyclic nature of the REM sleep-like state in the cuttlefish Sepia officinalis. J Exp Biol. doi: 10.1242/jeb.174862

Ladau, J., Shi, Y., Jing, X., He, J. S., Chen, L., Lin, X., Fierer, N., Gilbert, J. A., Pollard, K. S., & Chu, H. (2018). Existing Climate Change Will Lead to Pronounced Shifts in the Diversity of Soil Prokaryotes. mSystems, 3(5). doi: 10.1128/mSystems.00167-18

Langdon, E. M., & Gladfelter, A. S. (2018). Probing RNA Structure in Liquid-Liquid Phase Separation Using SHAPE-MaP. Methods Enzymol, 611, 67-79. doi: 10.1016/bs.mie.2018.09.039

Li, J., Wang, G., Mayes, M. A., Allison, S. D., Frey, S. D., Shi, Z., Hu, X. M., Luo, Y., & Melillo, J. M. (2018). Reduced carbon use efficiency and increased microbial turnover with soil warming. Glob Chang Biol. doi: 10.1111/gcb.14517

Liang, A., Zhang, Y., Zhang, X., Yang, X., McLaughlin, N., Chen, X., Guo, Y., Jia, S., Zhang, S., Wang, L., & Tang, J. (2019). Investigations of relationships among aggregate pore structure, microbial biomass, and soil organic carbon in a Mollisol using combined non-destructive measurements and phospholipid fatty acid analysis. SOIL & TILLAGE RESEARCH, 185, 94-101. doi: 10.1016/j.still.2018.09.003

Maxson Jones, K., Ankeny, R. A., & Cook-Deegan, R. (2018). The Bermuda Triangle: The Pragmatics, Policies, and Principles for Data Sharing in the History of the Human Genome Project. J Hist Biol. doi: 10.1007/s10739-018-9538-7

McGreevy, K. M., Heikes, K. L., Kult, S., Tharp, M. E., & Goldstein, B. (2018). Fluorescent Cell Staining Methods for Living Hypsibius exemplaris Embryos. Cold Spring Harb Protoc, 2018(11), pdb.prot106021. doi: 10.1101/pdb.prot106021

Mensinger, A. F., Van Wert, J. C., & Rogers, L. S. (2018). Lateral line sensitivity in free swimming toadfish, Opsanus tau. J Exp Biol. doi: 10.1242/jeb.190587

Steimle, J. D., Rankin, S. A., Slagle, C. E., Bekeny, J., Rydeen, A. B., Chan, S. S. K., Kweon, J., Yang, X. H., Ikegami, K., Nadadur, R. D., Rowton, M., Hoffmann, A. D., Lazarevic, S., Thomas, W., Boyle Anderson, E. A. T., Horb, M. E., Luna-Zurita, L., Ho, R. K., Kyba, M., Jensen, B., Zorn, A. M., Conlon, F. L., & Moskowitz, I. P. (2018). Evolutionarily conserved Tbx5-Wnt2/2b pathway orchestrates cardiopulmonary development. Proc Natl Acad Sci U S A. doi: 10.1073/pnas.1811624115

Valiela, I., Liu, D., Lloret, J., Chenoweth, K., & Hanacek, D. (2018). Stable isotopic evidence of nitrogen sources and C4 metabolism driving the world’s largest macroalgal green tides in the Yellow Sea. SCIENTIFIC REPORTS, 8(1), 17437. doi: 10.1038/s41598-018-35309-3

Braubach, O., Tombaz, T., Geiller, T., Homma, R., Bozza, T., Cohen, L. B., & Choi, Y. (2018). Sparsened neuronal activity in an optogenetically activated olfactory glomerulus. Sci Rep, 8(1), 14955. doi: 10.1038/s41598-018-33021-w

Elmstrom, E., Valiela, I., & Fox, S. E. (2018). Watershed-Estuary Coupling in Pacific Panama: Isotopic Evidence of Forest and Pasture Land Covers on Watersheds and Marine Contributions to Suspended Particulate Matter in Mangrove Estuaries. ESTUARIES AND COASTS, 41(7), 1968-1976. doi: 10.1007/s12237-018-0400-0

Fan, K., Weisenhorn, P., Gilbert, J. A., & Chu, H. (2018). Wheat rhizosphere harbors a less complex and more stable microbial co-occurrence pattern than bulk soil. SOIL BIOLOGY & BIOCHEMISTRY, 125, 251-260. doi: 10.1016/j.soilbio.2018.07.022

Osorno, T., Arenas, O., Ramirez-Suarez, N. J., Echeverry, F. A., Gomez, M. D. P., & Nasi, E. (2018). Light control of G protein signaling pathways by a novel photopigment. PLOS ONE, 13(10), e0205015. doi: 10.1371/journal.pone.0205015

Sokolov, A., Kicklighter, D., Schlosser, A., Wang, C., Monier, E., Brown-Steiner, B., Prinn, R., Forest, C., Gao, X., Libardoni, A., & Eastham, S. (2018). Description and Evaluation of the MIT Earth System Model (MESM). JOURNAL OF ADVANCES IN MODELING EARTH SYSTEMS, 10(8), 1759-1789. doi: 10.1029/2018MS001277

Tian, H., Lu, C., Pan, S., Yang, J., Miao, R., Ren, W., Yu, Q., Fu, B., Jin, F. F., Lu, Y., Melillo, J., Ouyang, Z., Palm, C., & Reilly, J. (2018). Optimizing resource use efficiencies in the food-energy-water nexus for sustainable agriculture: from conceptual model to decision support system. CURRENT OPINION IN ENVIRONMENTAL SUSTAINABILITY, 33, 104-113. doi: 10.1016/j.cosust.2018.04.003

Cardinal, E. A., Radford, C. A., & Mensinger, A. F. (2018). The potential for the anterior lateral line to function for sound localization in toadfish (Opsanus tau). J Exp Biol. doi: 10.1242/jeb.180679

Edsinger, E., & Dölen, G. (2018). A Conserved Role for Serotonergic Neurotransmission in Mediating Social Behavior in Octopus. Current Biology. doi: 10.1016/j.cub.2018.07.061

Hanlon, R. T. (2018). Checking your mate: The Evolution of Beauty: How Darwin’s Forgotten Theory of Mate Choice Shapes the Animal World-and Us. FASEB J, 32(10), 5213-5214. doi: 10.1096/fj.201801701

Heskel, M. A., & Tang, J. (2018). Environmental controls on light inhibition of respiration and leaf and canopy daytime carbon exchange in a temperate deciduous forest. Tree Physiol. doi: 10.1093/treephys/tpy103

Kendrick, M. R., Huryn, A. D., Bowden, W. B., Deegan, L. A., Findlay, R. H., Hershey, A. E., Peterson, B. J., Benes, J., & Schuett, E. (2018). Linking permafrost thaw to shifting biogeochemistry and food web resources in an arctic river. Glob Chang Biol. doi: 10.1111/gcb.14448

Simona, C., Stefania, V., Franco, T., Simona, R., Heba, R., Jacopo, C., Francesco, C., Barbara, N., Orlando, V., G, M. H., L, S. M., & Stefano, F. (2018). Microbiome profiling in extremely acidic soils affected by hydrothermal fluids: the case of Solfatara Crater (Campi Flegrei, southern Italy). FEMS Microbiology Ecology, fiy190-fiy190. doi: 10.1093/femsec/fiy190

Vachula, R. S., Russell, J. M., Huang, Y. S., & Richter, N. (2018). Assessing the spatial fidelity of sedimentary charcoal size fractions as fire history proxies with a high-resolution sediment record and historical data. Palaeogeography Palaeoclimatology Palaeoecology, 508, 166-175. doi: 10.1016/j.palaeo.2018.07.032

Amaral-Zettler, L. A., Schmidt, V., & Smith, K. F. (2018). Microbial Community and Potential Pathogen Shifts Along an Ornamental Fish Supply Chain. Microorganisms, 6(3). doi: 10.3390/microorganisms6030091

Hoen, A. G., Madan, J. C., Li, Z., Coker, M., Lundgren, S. N., Morrison, H. G., Palys, T., Jackson, B. P., Sogin, M. L., Cottingham, K. L., & Karagas, M. R. (2018). Sex-specific associations of infants’ gut microbiome with arsenic exposure in a US population. SCIENTIFIC REPORTS, 8(ARTN 12627). doi: 10.1038/s41598-018-30581-9

Jankowski, K., Neill, C., Davidson, E. A., Macedo, M. N., Costa, C., Galford, G. L., Maracahipes Santos, L., Lefebvre, P., Nunes, D., Cerri, C. E. P., McHorney, R., O’Connell, C., & Coe, M. T. (2018). Deep soils modify environmental consequences of increased nitrogen fertilizer use in intensifying Amazon agriculture. Sci Rep, 8(1), 13478. doi: 10.1038/s41598-018-31175-1

Jeffery, W. R. (2018). Progenitor Targeting by Adult Stem Cells in Ciona Homeostasis, Injury, and Regeneration. Dev Biol. doi: 10.1016/j.ydbio.2018.09.005

Langdon, E. M., & Gladfelter, A. S. (2018). A New Lens for RNA Localization: Liquid-Liquid Phase Separation. Annu Rev Microbiol, 72, 255-271. doi: 10.1146/annurev-micro-090817-062814

Liu, Z., An, S., Lu, X., Hu, H., & Tang, J. (2018). Using canopy greenness index to identify leaf ecophysiological traits during the foliar senescence in an oak forest. ECOSPHERE, 9(7). doi: 10.1002/ecs2.2337

Locke, D. H., Avolio, M., Trammell, T. L. E., Chowdhury, R. R., Grove, J. M., Rogan, J., Martin, D. G., Bettez, N., Cavender-Bares, J., Groffman, P. M., Hall, S. J., Heffernan, J. B., Hobbie, S. E., Larson, K. L., Morse, J. L., Neill, C., Ogden, L. A., O’Neil-Dunne, J. P. M., Pataki, D., Pearse, W. D., Polsky, C., & Wheeler, M. M. (2018). A multi-city comparison of front and backyard differences in plant species diversity and nitrogen cycling in residential landscapes. LANDSCAPE AND URBAN PLANNING, 178, 102-111. doi: 10.1016/j.landurbplan.2018.05.030