Recent MBL Publications

(as of October 17, 2019)

Bulseco, A. N., Vineis, J. H., Murphy, A. E., Spivak, A. C., Giblin, A. E., Tucker, J., & Bowen, J. L. (2019). Metagenomics coupled with biogeochemical rates measurements provide evidence that nitrate addition stimulates respiration in salt marsh sediments. Limnol Oceanogr, 0(0). doi: 10.1002/lno.11326

Kim, S., Kalappurakkal, J. M., Mayor, S., & Rosen, M. K. (2019). Phosphorylation of Nephrin induces phase separated domains that move through actomyosin contraction. Mol Biol Cell, mbcE18120823. doi: 10.1091/mbc.E18-12-0823

Mitchison-Field, L. M. Y., Vargas-Muñiz, J. M., Stormo, B. M., Vogt, E. J. D., Van Dierdonck, S., Pelletier, J. F., Ehrlich, C., Lew, D. J., Field, C. M., & Gladfelter, A. S. (2019). Unconventional Cell Division Cycles from Marine-Derived Yeasts. Curr Biol. doi: 10.1016/j.cub.2019.08.050

Snead, W. T., & Gladfelter, A. S. (2019). The Control Centers of Biomolecular Phase Separation: How Membrane Surfaces, PTMs, and Active Processes Regulate Condensation. Mol Cell. doi: 10.1016/j.molcel.2019.09.016

Williams, L. E., Cullen, N., DeGiorgis, J. A., Martinez, K. J., Mellone, J., Oser, M., Wang, J., & Zhang, Y. (2019). Variation in genome content and predatory phenotypes between Bdellovibrio sp. NC01 isolated from soil and B. bacteriovorus type strain HD100. Microbiology. doi: 10.1099/mic.0.000861

Bono, L. M., Orton, R. J., Peredo, E. L., Morrison, H. G., Sistrom, M., Simmons, S., & Turner, P. E. (2019). Spatiotemporal dynamics of RNA virus diversity in a phyllosphere microbial community. bioRxiv. doi: 10.1101/772475

Theroux, S., Huang, Y., Toney, J. L., Andersen, R., Nyren, P., Bohn, R., Salacup, J., Murphy, L., & Amaral-Zettler, L. (2019). Successional blooms of alkenone-producing haptophytes in Lake George, North Dakota: Implications for continental paleoclimate reconstructions. LIMNOLOGY AND OCEANOGRAPHY. doi: 10.1002/lno.11311

Yang, H., Chen, X., Tang, J., Zhang, L., Zhang, C., Perry, D. C., & You, W. (2019). External carbon addition increases nitrate removal and decreases nitrous oxide emission in a restored wetland. ECOLOGICAL ENGINEERING, 138, 200-208. doi: 10.1016/j.ecoleng.2019.07.021

Bisht, J., LeValley, P., Noren, B., McBride, R., Kharkar, P., Kloxin, A., Gatlin, J., & Oakey, J. (2019). Light-inducible activation of cell cycle progression in Xenopus egg extracts under microfluidic confinement. Lab Chip. doi: 10.1039/c9lc00569b

Geffeney, S. L., Williams, B. L., Rosenthal, J. J. C., Birk, M. A., Felkins, J., Wisell, C. M., Curry, E. R., & Hanifin, C. T. (2019). Convergent and parallel evolution in a voltage-gated sodium channel underlies TTX-resistance in the Greater Blue-ringed Octopus: Hapalochlaena lunulata. Toxicon, 170, 77-84. doi: 10.1016/j.toxicon.2019.09.013

Gewirtzman, J., Tang, J., Melillo, J. M., Werner, W. J., Kurtz, A. C., Fulweiler, R. W., & Carey, J. C. (2019). Soil Warming Accelerates Biogeochemical Silica Cycling in a Temperate Forest. FRONTIERS IN PLANT SCIENCE, 10(ARTN 1097). doi: 10.3389/fpls.2019.01097

Barton, J. A., Hutson, K. S., Bourne, D. G., Humphrey, C., Dybala, C., & Rawlinson, K. A. (2019). The Life Cycle of the Acropora Coral-Eating Flatworm (AEFW), Prosthiostomum acroporae; The Influence of Temperature and Management Guidelines. Frontiers in Marine Science, 6. doi: 10.3389/fmars.2019.00524

Gibson, A., Laubichler, M. D., & Maienschein, J. (2019). Introduction. ISIS, 110(3), 497-501. doi: 10.1086/705542

Laubichler, M. D., Maienschein, J., & Renn, J. (2019). Computational History of Knowledge: Challenges and Opportunities. ISIS, 110(3), 502-512. doi: 10.1086/705544

Pedrosa-Pàmies, R., Conte, M. H., Weber, J. C., & Johnson, R. (2019). Hurricanes Enhance Labile Carbon Export to the Deep Ocean. GEOPHYSICAL RESEARCH LETTERS, 0(0). doi: 10.1029/2019GL083719

Rossetti, B. J., Wilbert, S. A., Mark Welch, J. L., Borisy, G. G., & Nagy, J. G. (2019). Semi-blind sparse affine spectral unmixing of autofluorescence-contaminated micrographs. Bioinformatics. doi: 10.1093/bioinformatics/btz674

Yeoman, C. J., Brutscher, L. M., Esen, O. C., Ibaoglu, F., Fowler, C., Eren, A. M., Wanner, K., & Weaver, D. K. (2019). Genome-resolved insights into a novel Spiroplasma symbiont of the Wheat Stem Sawfly (Cephus cinctus). PeerJ, 7(ARTN e7548). doi: 10.7717/peerj.7548

Delmont, T. O., Kiefl, E., Kilinc, O., Esen, O. C., Uysal, I., Rappé, M. S., Giovannoni, S., & Eren, A. M. (2019). Single-amino acid variants reveal evolutionary processes that shape the biogeography of a global SAR11 subclade. Elife, 8. doi: 10.7554/eLife.46497

Noree, C., Begovich, K., Samilo, D., Broyer, R., Monfort, E., & Wilhelm, J. E. (2019). A quantitative screen for metabolic enzyme structures reveals patterns of assembly across the yeast metabolic network. Mol Biol Cell, mbcE19040224. doi: 10.1091/mbc.E19-04-0224

Sutherland, K. R., Gemmell, B. J., Colin, S. P., & Costello, J. H. (2019). Maneuvering Performance in the Colonial Siphonophore, Nanomia bijuga. Biomimetics (Basel), 4(3). doi: 10.3390/biomimetics4030062

Cavicchioli, R., Ripple, W. J., Timmis, K. N., Azam, F., Bakken, L. R., Baylis, M., Behrenfeld, M. J., Boetius, A., Boyd, P. W., Classen, A. T., Crowther, T. W., Danovaro, R., Foreman, C. M., Huisman, J., Hutchins, D. A., Jansson, J. K., Karl, D. M., Koskella, B., Welch, D. B. M., Martiny, J. B. H., Moran, M. A., Orphan, V. J., Reay, D. S., Remais, J. V., Rich, V. I., Singh, B. K., Stein, L. Y., Stewart, F. J., Sullivan, M. B., van Oppen, M. J. H., Weaver, S. C., Webb, E. A., & Webster, N. S. (2019). Scientists’ warning to humanity: microorganisms and climate change. NATURE REVIEWS MICROBIOLOGY, 17(9), 569-586. doi: 10.1038/s41579-019-0222-5

Sánchez-García, M. A., Zottoli, S. J., & Roberson, L. M. (2019). Hypoxia Has a Lasting Effect on Fast-Startle Behavior of the Tropical Fish Haemulon plumieri. Biol Bull, 237(1), 48-62. doi: 10.1086/704337

Sterner, Z. R., Rankin, S. A., Wlizla, M., Choi, J. A., Luedeke, D. M., Zorn, A. M., & Buchholz, D. R. (2019). Novel vectors for functional interrogation of Xenopus ORFeome coding sequences. Genesis. doi: 10.1002/dvg.23329

Song, J., Wan, S., Piao, S., Knapp, A. K., Classen, A. T., Vicca, S., Ciais, P., Hovenden, M. J., Leuzinger, S., Beier, C., Kardol, P., Xia, J., Liu, Q., Ru, J., Zhou, Z., Luo, Y., Guo, D., Adam Langley, J., Zscheischler, J., Dukes, J. S., Tang, J., Chen, J., Hofmockel, K. S., Kueppers, L. M., Rustad, L., Liu, L., Smith, M. D., Templer, P. H., Quinn Thomas, R., Norby, R. J., Phillips, R. P., Niu, S., Fatichi, S., Wang, Y., Shao, P., Han, H., Wang, D., Lei, L., Wang, J., Li, X., Zhang, Q., Li, X., Su, F., Liu, B., Yang, F., Ma, G., Li, G., Liu, Y., Liu, Y., Yang, Z., Zhang, K., Miao, Y., Hu, M., Yan, C., Zhang, A., Zhong, M., Hui, Y., Li, Y., & Zheng, M. (2019). A meta-analysis of 1,119 manipulative experiments on terrestrial carbon-cycling responses to global change. Nat Ecol Evol. doi: 10.1038/s41559-019-0958-3

Chandler, T., Shroff, H., Oldenbourg, R., & La Riviere, P. (2019). Spatio-angular Fluorescence microscopy I. Basic theory. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA A-OPTICS IMAGE SCIENCE AND VISION, 36(8), 1334-1345. doi: 10.1364/JOSAA.36.001334

Chandler, T., Shroff, H., Oldenbourg, R., & La Riviere, P. (2019). Spatio-angular fluorescence microscopy II. Paraxial 4f imaging. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA A-OPTICS IMAGE SCIENCE AND VISION, 36(8), 1346-1360. doi: 10.1364/JOSAA.36.001346

Hale, M. E. (2019). Toward Diversification of Species Models in Neuroscience. Brain Behav Evol, 93(2-3), 166-168. doi: 10.1159/000500499

Kuehn, E., Stockinger, A. W., Girard, J., Raible, F., & Özpolat, B. D. (2019). A scalable culturing system for the marine annelid Platynereis dumerilii. doi: 10.1101/714238

Mayes, M., Melillo, J., Neill, C., Palm, C., Mustard, J., & Nyadzi, G. (2019). Nitrogen Cycle Patterns During Forest Regrowth in an African Miombo woodland Landscape. JOURNAL OF GEOPHYSICAL RESEARCH-BIOGEOSCIENCES, 124(6), 1591-1603. doi: 10.1029/2018JG004803

Virgirinia, R. P., Jahan, N., Okada, M., Takebayashi-Suzuki, K., Yoshida, H., Nakamura, M., Akao, H., Yoshimoto, Y., Fatchiyah, F., Ueno, N., & Suzuki, A. (2019). Cdc2-like kinase 2 (Clk2) promotes early neural development in Xenopus embryos. Development Growth & Differentiation. doi: 10.1111/dgd.12619

Willett, J. A., Cao, J. Y., Johnson, A., Patel, O. H., Dorris, D. M., & Meitzen, J. (2019). The estrous cycle modulates rat caudate-putamen medium spiny neuron physiology. European Journal of Neuroscience. doi: 10.1111/ejn.14506

Bortolus, A., Adam, P., Adams, J. B., Ainouche, M. L., Ayres, D., Bertness, M. D., Bouma, T. J., Bruno, J. F., Caçador, I., Carlton, J. T., Castillo, J. M., Costa, C. S. B., Davy, A. J., Deegan, L., Duarte, B., Figueroa, E., Gerwein, J., Gray, A. J., Grosholz, E. D., Hacker, S. D., Hughes, A. R., Mateos-Naranjo, E., Mendelssohn, I. A., Morris, J. T., Muñoz-Rodríguez, A. F., Nieva, F. J. J., Levin, L. A., Li, B., Liu, W., Pennings, S. C., Pickart, A., Redondo-Gómez, S., Richardson, D. M., Salmon, A., Schwindt, E., Silliman, B. R., Sotka, E. E., Stace, C., Sytsma, M., Temmerman, S., Turner, R. E., Valiela, I., Weinstein, M. P., & Weis, J. S. (2019). Supporting Spartina: Interdisciplinary perspective shows Spartina as a distinct solid genus. Ecology, e02863. doi: 10.1002/ecy.2863

Pollak, D. J., Feller, K. D., Serbe, E., Mircic, S., & Gage, G. J. (2019). An Electrophysiological Investigation of Power-Amplification in the Ballistic Mantis Shrimp Punch. J Undergrad Neurosci Educ, 17(2), T12-t18. doi:

Altartouri, B., Bidhendi, A. J., Tani, T., Suzuki, J., Conrad, C., Chebli, Y., Liu, N., Karunakaran, C., Scarcelli, G., & Geitmann, A. (2019). Pectin chemistry and cellulose crystallinity govern pavement cell morphogenesis in a multi-step mechanism. Plant Physiol. doi: 10.1104/pp.19.00303

Bloodgood, R. A., Tetreault, J., & Sloboda, R. D. (2019). The flagellar membrane glycoprotein FMG-1B Is necessary for expression of force at the flagellar surface. J Cell Sci. doi: 10.1242/jcs.233429

Colón-Ramos, D. A., La Riviere, P., Shroff, H., & Oldenbourg, R. (2019). Transforming the development and dissemination of cutting-edge microscopy and computation. Nat Methods, 16(8), 667-669. doi: 10.1038/s41592-019-0475-y
Mayorova, T. D., Hammar, K., Winters, C. A., Reese, T. S., & Smith, C. L. (2019). The ventral epithelium of Trichoplax adhaerens deploys in distinct patterns cells that secrete digestive enzymes, mucus or diverse neuropeptides. Biol Open. doi: 10.1242/bio.045674

Birk, M. A., Mislan, K. A. S., Wishner, K. F., & Seibel, B. A. (2019). Metabolic adaptations of the pelagic octopod Japetella diaphana to oxygen minimum zones. Deep-Sea Research Part I-Oceanographic Research Papers, 148, 123-131. doi: 10.1016/j.dsr.2019.04.017

Ivashkin, E., Melnikova, V., Kurtova, A., Brun, N., Obukhova, A., Khabarova, M. Y., Yakusheff, A., Adameyko, I., Gribble, K. E., & Voronezhskaya, E. E. (2019). Transglutaminase activity determines nuclear localization of serotonin immunoreactivity in the early embryos of invertebrates and vertebrates. ACS Chem Neurosci. doi: 10.1021/acschemneuro.9b00346

Bulseco, A. N., Giblin, A. E., Tucker, J., Murphy, A. E., Sanderman, J., Hiller-Bittrolff, K., & Bowen, J. L. (2019). Nitrate addition stimulates microbial decomposition of organic matter in salt marsh sediments. Glob Chang Biol. doi: 10.1111/gcb.14726

Kicklighter, D. W., Melillo, J. M., Monier, E., Sokolov, A. P., & Zhuang, Q. (2019). Future nitrogen availability and its effect on carbon sequestration in Northern Eurasia. Nat Commun, 10(1), 3024. doi: 10.1038/s41467-019-10944-0

Colin, S. P. (2019). The role of predatory jellyfish and ctenophores is increasing where their main competitors are being overfished. NATURAL HISTORY, 127(7-8), 18-23.

Costello, J. H., Colin, S. P., Gemmell, B. J., & Dabiri, J. O. (2019). Hydrodynamics of Vortex Generation during Bell Contraction by the Hydromedusa Eutonina indicans (Romanes, 1876). Biomimetics (Basel), 4(3). doi: 10.3390/biomimetics4030044

Griffith, T. N., Docter, T. A., & Lumpkin, E. A. (2019). Tetrodotoxin-sensitive sodium channels mediate action potential firing and excitability in menthol-sensitive Vglut3-lineage sensory neurons. The Journal of Neuroscience, 2817-2818. doi: 10.1523/JNEUROSCI.2817-18.2019

Messerli, M. A., Raihan, M. J., Kobylkevich, B. M., Benson, A. C., Bruening, K. S., Shribak, M., Rosenthal, J. J. C., & Sohn, J. J. (2019). Construction and Composition of the Squid Pen from Doryteuthis pealeii. The Biological Bulletin, 000-000. doi: 10.1086/704209

Ditlev, J. A., Vega, A. R., Köster, D. V., Su, X., Tani, T., Lakoduk, A. M., Vale, R. D., Mayor, S., Jaqaman, K., & Rosen, M. K. (2019). A composition-dependent molecular clutch between T cell signaling condensates and actin. Elife, 8. doi: 10.7554/eLife.42695

Nakai, N., Sato, K., Tani, T., Saito, K., Sato, F., & Terada, S. (2019). Genetically encoded orientation probes for F-actin for fluorescence polarization microscopy. Microscopy (Oxf). doi: 10.1093/jmicro/dfz022

Willett, J. A., Cao, J., Johnson, A., Patel, O. H., Dorris, D. M., & Meitzen, J. (2019). The estrous cycle modulates rat caudate-putamen medium spiny neuron physiology. Eur J Neurosci. doi: 10.1111/ejn.14506

Ecklu-Mensah, G., Sackey, S. T., Morrison, H. G., Sogin, M. L., Murphy, L. G., & Reznikoff, W. S. (2019). Assessment of bacterial diversity in western Accra, Ghana, drinking water samples. Journal of Water, Sanitation and Hygiene for Development. doi: 10.2166/washdev.2019.123

Fiore-Donno, A. M., Richter-Heitmann, T., Degrune, F., Dumack, K., Regan, K. M., Marhan, S., Boeddinghaus, R. S., Rillig, M. C., Friedrich, M. W., Kandeler, E., & Bonkowski, M. (2019). Functional Traits and Spatio-Temporal Structure of a Major Group of Soil Protists (Rhizaria: Cercozoa) in a Temperate Grassland. FRONTIERS IN MICROBIOLOGY, 10. doi: 10.3389/fmicb.2019.01332