Recent MBL Publications

(as of June 17, 2019)

Chen, R., Park, H. A., Mnatsakanyan, N., Niu, Y., Licznerski, P., Wu, J., Miranda, P., Graham, M., Tang, J., Boon, A. J. W., Cossu, G., Mandemakers, W., Bonifati, V., Smith, P. J. S., Alavian, K. N., & Jonas, E. A. (2019). Parkinson’s disease protein DJ-1 regulates ATP synthase protein components to increase neuronal process outgrowth. Cell Death Dis, 10(6), 469. doi: 10.1038/s41419-019-1679-x

Field, C. M., Pelletier, J. F., & Mitchison, T. J. (2019). Disassembly of Actin and Keratin Networks by Aurora B Kinase at the Midplane of Cleaving Xenopus laevis Eggs. Curr Biol. doi: 10.1016/j.cub.2019.05.016

Sun, D. A., & Patel, N. H. (2019). The amphipod crustacean Parhyale hawaiensis: An emerging comparative model of arthropod development, evolution, and regeneration. Wiley Interdiscip Rev Dev Biol, e355. doi: 10.1002/wdev.355

Welch, J. L. M., Dewhirst, F. E., & Borisy, G. G. (2019). Biogeography of the Oral Microbiome: The Site-Specialist Hypothesis. Annu Rev Microbiol. doi: 10.1146/annurev-micro-090817-062503

Blommaert, J., Riss, S., Hecox-Lea, B., Mark Welch, D. B., & Stelzer, C. P. (2019). Small, but surprisingly repetitive genomes: transposon expansion and not polyploidy has driven a doubling in genome size in a metazoan species complex. BMC GENOMICS, 20(1), 466. doi: 10.1186/s12864-019-5859-y

Cisneros, M., Cacho, I., Frigola, J., Sanchez-Vidal, A., Calafat, A., Pedrosa-Pamies, R., Rumin-Caparros, A., & Canals, M. (2019). Deep-water formation variability in the north-western Mediterranean Sea during the last 2500 yr: A proxy validation with present-day data. GLOBAL AND PLANETARY CHANGE, 177, 56-68. doi: 10.1016/j.gloplacha.2019.03.012

Moss, R. H., Avery, S., Baja, K., Burkett, M., Chischilly, A. M., Dell, J., Fleming, P. A., Geil, K., Jacobs, K., Jones, A., Knowlton, K., Koh, J., Lemos, M. C., Melillo, J., Pandya, R., Richmond, T. C., Scarlett, L., Snyder, J., Stults, M., Waple, A. M., Whitehead, J., Zarrilli, D., Ayyub, B. M., Fox, J., Ganguly, A., Joppa, L., Julius, S., Kirshen, P., Kreutter, R., McGovern, A., Meyer, R., Neumann, J., Solecki, W., Smith, J., Tissot, P., Yohe, G., & Zimmerman, R. (2019). Evaluating Knowledge to Support Climate Action: A Framework for Sustained Assessment. Report of an Independent Advisory Committee on Applied Climate Assessment. WEATHER CLIMATE AND SOCIETY, 11(3), 465-487. doi: 10.1175/WCAS-D-18-0134.1

Shaiber, A., & Eren, A. M. (2019). Composite Metagenome-Assembled Genomes Reduce the Quality of Public Genome Repositories. MBIO, 10(3). doi: 10.1128/mBio.00725-19

Szymanski, J. R., & Yuste, R. (2019). Mapping the Whole-Body Muscle Activity of Hydra vulgaris. Curr Biol. doi: 10.1016/j.cub.2019.05.012

Cramm, M. A., Chakraborty, A., Li, C., Ruff, S. E., Jorgensen, B. B., & Hubert, C. R. J. (2019). Freezing Tolerance of Thermophilic Bacterial Endospores in Marine Sediments. FRONTIERS IN MICROBIOLOGY, 10(ARTN 945). doi: 10.3389/fmicb.2019.00945

Dion, M. F., Kapoor, M., Sun, Y., Wilson, S., Ryan, J., Vigouroux, A., van Teeffelen, S., Oldenbourg, R., & Garner, E. C. (2019). Bacillus subtilis cell diameter is determined by the opposing actions of two distinct cell wall synthetic systems. Nat Microbiol. doi: 10.1038/s41564-019-0439-0

Goldmann, K., Boeddinghaus, R. S., Klemmer, S., Regan, K. M., Heintz-Buschart, A., Fischer, M., Prati, D., Piepho, H. P., Berner, D., Marhan, S., Kandeler, E., Buscot, F., & Wubet, T. (2019). Unraveling spatio-temporal variability of arbuscular mycorrhiza fungi in a temperate grassland plot. Environ Microbiol. doi: 10.1111/1462-2920.14653

Harris, R. M., Kao, H. Y., Alarcon, J. M., Hofmann, H. A., & Fenton, A. A. (2019). Hippocampal transcriptomic responses to enzyme-mediated cellular dissociation. Hippocampus. doi: 10.1002/hipo.23095

Lutz, H. L., Ramírez-Puebla, S. T., Abbo, L., Durand, A., Schlundt, C., Gottel, N. R., Sjaarda, A. K., Hanlon, R. T., Gilbert, J. A., & Mark Welch, J. L. (2019). A Simple Microbiome in the European Common Cuttlefish, Sepia officinalis. mSystems, 4(4). doi: 10.1128/mSystems.00177-19

Alcami, P., & Pereda, A. E. (2019). Beyond plasticity: the dynamic impact of electrical synapses on neural circuits. NATURE REVIEWS NEUROSCIENCE, 20(5), 253-271. doi: 10.1038/s41583-019-0133-5

Horb, M., Wlizia, M., Abu-Daya, A., McNamara, S., Gajdasik, D., Igawa, T., Suzuki, A., Ogino, H., Noble, A., Robert, J., James-Zorn, C., Guille, M., Nicolas, M., Lafond, T., Boujard, D., Audic, Y., Guillet, B., Kashiwagi, A., Kashiwagi, K., Suzuki, N., Tazawa, I., Ochi, H., Furuno, N., Takasc, M., Nakajima, K., Hanada, H., Miura, I., Kurabayashi, A., Kato, T., Sato, K., Takcbayashi-Suzuki, K., & Yoshida, H. (2019). Xenopus Resources: Transgenic, Inbred and Mutant Animals, Training Opportunities, and Web-Based Support. FRONTIERS IN PHYSIOLOGY, 10(ARTN 387). doi: 10.3389/fphys.2019.00387

Morrison, E. W., Pringle, A., van Diepen, L. T. A., Grandy, A. S., Melillo, J. M., & Frey, S. D. (2019). Warming alters fungal communities and litter chemistry with implications for soil carbon stocks. SOIL BIOLOGY & BIOCHEMISTRY, 132, 120-130. doi: 10.1016/j.soilbio.2019.02.005

Gemmell, B. J., Colin, S. P., Costello, J. H., & Sutherland, K. R. (2019). A ctenophore (comb jelly) employs vortex rebound dynamics and outperforms other gelatinous swimmers. R Soc Open Sci, 6(3), 181615. doi: 10.1098/rsos.181615

Han, M., Dsouza, M., Zhou, C., Li, H., Zhang, J., Chen, C., Yao, Q., Zhong, C., Zhou, H., Gilbert, J. A., Wang, Z., & Ning, K. (2019). Agricultural Risk Factors Influence Microbial Ecology in Honghu Lake. Genomics Proteomics Bioinformatics. doi: 10.1016/j.gpb.2018.04.008

Taylor, D. I., Oviatt, C. A., Giblin, A. E., Tucker, J., Diaz, R. J., & Keay, K. (2019). Wastewater input reductions reverse historic hypereutrophication of Boston Harbor, USA. AMBIO. doi: 10.1007/s13280-019-01174-1

Coker, M. O., Hoen, A. G., Dade, E., Lundgren, S., Li, Z., Wong, A. D., Zens, M. S., Palys, T. J., Morrison, H. G., Sogin, M. L., Baker, E. R., Karagas, M. R., & Madan, J. C. (2019). Specific class of intrapartum antibiotics relates to maturation of the infant gut microbiota: a prospective cohort study. BJOG. doi: 10.1111/1471-0528.15799

Conte, M. H., Carter, A. M., Koweek, D. A., Huang, S., & Weber, J. C. (2019). The elemental composition of the deep particle flux in the Sargasso Sea. CHEMICAL GEOLOGY, 511, 279-313. doi: 10.1016/j.chemgeo.2018.11.001

Nissimov, J. I., Talmy, D., Haramaty, L., Fredricks, H., Zelzion, E., Knowles, B., Eren, M., Vandzura, R., Laber, C. P., Schieler, B. M., Johns, C. T., More, K., Coolen, M. J. L., Follows, M. J., Bhattacharya, D., Van Mooy, B. A. S., & Bidle, K. D. (2019). Biochemical diversity of glycosphingolipid biosynthesis as a driver of Coccolithovirus competitive ecology. Environ Microbiol. doi: 10.1111/1462-2920.14633

Van Wert, J. C., & Mensinger, A. F. (2019). Seasonal and Daily Patterns of the Mating Calls of the Oyster Toadfish, Opsanus tau. Biol Bull, 236(2), 97-107. doi: 10.1086/701754

Bhatnagar, S., Cowley, E. S., Kopf, S. H., Perez Castro, S., Kearney, S., Dawson, S., Hanselmann, K., & Ruff, S. E. (2019). Microbial community dynamics and coexistence in a sulfide-driven phototrophic bloom. bioRxiv, 604504. doi: 10.1101/604504Curr Biol. doi: 10.1016/j.cub.2019.02.061

Field, C. M., Pelletier, J. F., & Mitchison, T. (2019). Disassembly of actin and keratin networks by Aurora B kinase at the midplane of cleaving Xenopus laevis eggs. bioRxiv, 513200. doi: 10.1101/513200

Nelson, J. A., Johnson, D. S., Deegan, L. A., Spivak, A. C., & Sommer, N. R. (2019). Feedbacks Between Nutrient Enrichment and Geomorphology Alter Bottom-Up Control on Food Webs. ECOSYSTEMS, 22(2), 229-242. doi: 10.1007/s10021-018-0265-x

Trammell, T. L. E., Pataki, D. E., Still, C. J., Ehleringer, J. R., Avolio, M. L., Bettez, N., Cavender-Bares, J., Groffman, P. M., Grove, M., Hall, S. J., Heffernan, J., Hobbie, S. E., Larson, K. L., Morse, J. L., Neill, C., Nelson, K. C., O’Neil-Dunne, J., Pearse, W. D., Chowdhury, R. R., Steele, M., & Wheeler, M. M. (2019). Climate and lawn management interact to control C4 plant distribution in residential lawns across seven U.S. cities. Ecol Appl, e01884. doi: 10.1002/eap.1884

Fujioka, Y., Satoh, A. O., Horiuchi, K., Fujioka, M., Tsutsumi, K., Sasaki, J., Nepal, P., Kashiwagi, S., Paudel, S., Nishide, S., Nanbo, A., Sasaki, T., & Ohba, Y. (2019). A peptide derived from phosphoinositide 3-kinase inhibits endocytosis and influenza virus infection. Cell Struct Funct. doi: 10.1247/csf.19001

Curasi, S. R., Parker, T. C., Rocha, A. V., Moody, M. L., Tang, J., & Fetcher, N. (2019). Differential responses of ecotypes to climate in a ubiquitous arctic sedge: implications for future ecosystem C cycling. New Phytol. doi: 10.1111/nph.15790

Gladfelter, A. S., James, T. Y., & Amend, A. S. (2019). Marine fungi. Current Biology, 29(6), R191-R195. doi: 10.1016/j.cub.2019.02.009

Mo, Q., Li, Z., Sayer, E. J., Lambers, H., Li, Y., Zou, B., Tang, J., Heskel, M., Ding, Y., & Wang, F. (2019). Foliar phosphorus fractions reveal how tropical plants maintain photosynthetic rates despite low soil phosphorus availability. FUNCTIONAL ECOLOGY, 33(3), 503-513. doi: 10.1111/1365-2435.13252

MacCord, K. (2019). The impacts of assumptions on theories of tooth development and evolution at the turn of the nineteenth century. Hist Philos Life Sci, 41(1), 12. doi: 10.1007/s40656-019-0245-2

MacCord, K., & Maienschein, J. (2019). Understanding regeneration at different scales. Elife, 8. doi: 10.7554/elife.46569

Mitchison, T. J. (2019). Colloid osmotic parameterization and measurement of subcellular crowding. Mol Biol Cell, 30(2), 173-180. doi: 10.1091/mbc.E18-09-0549

Pervolaraki, E., Tyson, A. L., Pibiri, F., Poulter, S. L., Reichelt, A. C., Rodgers, R. J., Clapcote, S. J., Lever, C., Andreae, L. C., & Dachtler, J. (2019). The within-subject application of diffusion tensor MRI and CLARITY reveals brain structural changes in Nrxn2 deletion mice. Molecular Autism, 10. doi: 10.1186/s13229-019-0261-9

Schnell, A. K., Jozet-Alves, C., Hall, K. C., Radday, L., & Hanlon, R. T. (2019). Fighting and mating success in giant Australian cuttlefish is influenced by behavioural lateralization. Proceedings of the Royal Society B: Biological Sciences, 286(1898), 20182507-20182507. doi: 10.1098/rspb.2018.2507

Tamm, S. L. (2019). Defecation by the ctenophore Mnemiopsis leidyi occurs with an ultradian rhythm through a single transient anal pore. INVERTEBRATE BIOLOGY. doi: 10.1111/ivb.12236

Zheng, Y., Heng, P., Conte, M. H., Vachula, R. S., & Huang, Y. (2019). Systematic chemotaxonomic profiling and novel paleotemperature indices based on alkenones and alkenoates: Potential for disentangling mixed species input. Organic Geochemistry, 128, 26-41. doi: 10.1016/j.orggeochem.2018.12.008

Amend, A., Burgaud, G., Cunliffe, M., Edgcomb, V. P., Ettinger, C. L., Gutiérrez, M. H., Heitman, J., Hom, E. F. Y., Ianiri, G., Jones, A. C., Kagami, M., Picard, K. T., Quandt, C. A., Raghukumar, S., Riquelme, M., Stajich, J., Vargas-Muñiz, J., Walker, A. K., Yarden, O., & Gladfelter, A. S. (2019). Fungi in the Marine Environment: Open Questions and Unsolved Problems. MBIO, 10(2). doi: 10.1128/mBio.01189-18

Case, L. B., Zhang, X., Ditlev, J. A., & Rosen, M. K. (2019). Stoichiometry controls activity of phase-separated clusters of actin signaling proteins. SCIENCE, 363(6431), 1093-1097. doi: 10.1126/science.aau6313

Lamborg, C., Mincer, T., Buchanan, W., Collins, C., Swarr, G., Ganguli, P., Whalen, K., Bothner, M., & Valiela, I. (2019). Mercury speciation and retention in a salt marsh undergoing long-term fertilization. ESTUARINE COASTAL AND SHELF SCIENCE, 218, 188-196. doi: 10.1016/j.ecss.2018.11.031

McKay, L. J., Dlakić, M., Fields, M. W., Delmont, T. O., Eren, A. M., Jay, Z. J., Klingelsmith, K. B., Rusch, D. B., & Inskeep, W. P. (2019). Co-occurring genomic capacity for anaerobic methane and dissimilatory sulfur metabolisms discovered in the Korarchaeota. Nat Microbiol. doi: 10.1038/s41564-019-0362-4

Nagashima, R., Hibino, K., Ashwin, S. S., Babokhov, M., Fujishiro, S., Imai, R., Nozaki, T., Tamura, S., Tani, T., Kimura, H., Shribak, M., Kanemaki, M. T., Sasai, M., & Maeshima, K. (2019). Single nucleosome imaging reveals loose genome chromatin networks via active RNA polymerase II. J Cell Biol. doi: 10.1083/jcb.201811090

Reveillaud, J., Bordenstein, S. R., Cruaud, C., Shaiber, A., Esen, Ö. C., Weill, M., Makoundou, P., Lolans, K., Watson, A. R., Rakotoarivony, I., Bordenstein, S. R., & Eren, A. M. (2019). The Wolbachia mobilome in Culex pipiens includes a putative plasmid. Nat Commun, 10(1), 1051. doi: 10.1038/s41467-019-08973-w

Sabin, K. Z., Jiang, P., Gearhart, M. D., Stewart, R., & Echeverri, K. (2019). AP-1cFos/JunB/miR-200a regulate the pro-regenerative glial cell response during axolotl spinal cord regeneration. Communications Biology, 2(1), 91. doi: 10.1038/s42003-019-0335-4

Stewart, L. C., Algar, C. K., Fortunato, C. S., Larson, B. I., Vallino, J. J., Huber, J. A., Butterfield, D. A., & Holden, J. F. (2019). Fluid geochemistry, local hydrology, and metabolic activity define methanogen community size and composition in deep-sea hydrothermal vents. ISME J. doi: 10.1038/s41396-019-0382-3

Strandwitz, P., Kim, K. H., Terekhova, D., Liu, J. K., Sharma, A., Levering, J., McDonald, D., Dietrich, D., Ramadhar, T. R., Lekbua, A., Mroue, N., Liston, C., Stewart, E. J., Dubin, M. J., Zengler, K., Knight, R., Gilbert, J. A., Clardy, J., & Lewis, K. (2019). GABA-modulating bacteria of the human gut microbiota. Nat Microbiol, 4(3), 396-403. doi: 10.1038/s41564-018-0307-3

Wang, F., Kroeger, K. D., Gonneea, M. E., Pohlman, J. W., & Tang, J. (2019). Water salinity and inundation control soil carbon decomposition during salt marsh restoration: An incubation experiment. Ecol Evol, 9(4), 1911-1921. doi: 10.1002/ece3.4884

Williams, T. L., Senft, S. L., Yeo, J., Martín-Martínez, F. J., Kuzirian, A. M., Martin, C. A., DiBona, C. W., Chen, C. T., Dinneen, S. R., Nguyen, H. T., Gomes, C. M., Rosenthal, J. J. C., MacManes, M. D., Chu, F., Buehler, M. J., Hanlon, R. T., & Deravi, L. F. (2019). Dynamic pigmentary and structural coloration within cephalopod chromatophore organs. Nat Commun, 10(1), 1004. doi: 10.1038/s41467-019-08891-x

Wilts, B. D., Clode, P. L., Patel, N. H., & Schroeder-Turk, G. E. (2019). Nature’s functional nanomaterials: Growth or self-assembly? MRS BULLETIN, 44(2), 106-112. doi: 10.1557/mrs.2019.21

Sutherland, K. R., Gemmell, B. J., Colin, S. P., & Costello, J. H. (2019). Propulsive design principles in a multi-jet siphonophore. J Exp Biol. doi: 10.1242/jeb.198242

Arkhipova, I. R., & Yushenova, I. A. (2019). Giant transposons in eukaryotes: Is bigger better? Genome Biol Evol. doi: 10.1093/gbe/evz041

Dobay, A., Haas, C., Fucile, G., Downey, N., Morrison, H. G., Kratzer, A., & Arora, N. (2019). Microbiome-based body fluid identification of samples exposed to indoor conditions. Forensic Sci Int Genet, 40, 105-113. doi: 10.1016/j.fsigen.2019.02.010

Trigodet, F., Larche, N., Morrison, H. G., Jebbar, M., Thierry, D., & Maignien, L. (2019). Electroactive Bacteria Associated With Stainless Steel Ennoblement in Seawater. FRONTIERS IN MICROBIOLOGY, 10(ARTN 170). doi: 10.3389/fmicb.2019.00170

Vachula, R. S., Huang, Y., Longo, W. M., Dee, S. G., Daniels, W. C., & Russell, J. M. (2019). Evidence of Ice Age humans in eastern Beringia suggests early migration to North America. Quaternary Science Reviews, 205, 35-44. doi: 10.1016/j.quascirev.2018.12.003

Bennice, C. O., Rayburn, A. P., Brooks, W. R., & Hanlon, R. T. (2019). Fine-scale habitat partitioning facilitates sympatry between two octopus species in a shallow Florida lagoon. MARINE ECOLOGY PROGRESS SERIES, 609, 151-161. doi: 10.3354/meps12845

Glodzik, L., Rusinek, H., Tsui, W., Pirraglia, E., Kim, H. J., Deshpande, A., Li, Y., Storey, P., Randall, C., Chen, J. Y., Osorio, R. S., Butler, T., Tanzi, E., McQuillan, M., Harvey, P., Williams, S. K., Ogedegbe, G., Babb, J. S., & de Leon, M. J. (2019). Different Relationship Between Systolic Blood Pressure and Cerebral Perfusion in Subjects With and Without Hypertension. Hypertension, 73(1), 197-205. doi: 10.1161/HYPERTENSIONAHA.118.11233

Otopalik, A. G., Pipkin, J., & Marder, E. (2019). Neuronal morphologies built for reliable physiology in a rhythmic motor circuit. Elife, 8. doi: 10.7554/eLife.41728

Richter, N., Longo, W. M., George, S., Shipunova, A., Huang, Y., & Amaral-Zettler, L. (2019). Phylogenetic diversity in freshwater-dwelling Isochrysidales haptophytes with implications for alkenone production. Geobiology. doi: 10.1111/gbi.12330

Battefeld, A., Popovic, M. A., van der Werf, D., & Kole, M. H. P. (2019). A Versatile and Open-Source Rapid LED Switching System for One-Photon Imaging and Photo-Activation. FRONTIERS IN CELLULAR NEUROSCIENCE, 12. doi: 10.3389/fncel.2018.00530

Hanslik, K. L., Allen, S. R., Harkenrider, T. L., Fogerson, S. M., Guadarrama, E., & Morgan, J. R. (2019). Regenerative capacity in the lamprey spinal cord is not altered after a repeated transection. PLOS ONE, 14(1), e0204193. doi: 10.1371/journal.pone.0204193

Youn, S., Okinaka, C., & Mäthger, L. M. (2019). Elaborate pupils in skates may help camouflage the eye. J Exp Biol. doi: 10.1242/jeb.195966

Alberti, S., Gladfelter, A., & Mittag, T. (2019). Considerations and Challenges in Studying Liquid-Liquid Phase Separation and Biomolecular Condensates. Cell, 176(3), 419-434. doi: 10.1016/j.cell.2018.12.035

Bock, M. J., Jarvis, G. C., Corey, E. L., Stone, E. E., & Gribble, K. E. (2019). Maternal age alters offspring lifespan, fitness, and lifespan extension under caloric restriction: Supplementary Information. doi: 10.1101/527770

Tan, S., Chen, B., Zheng, H., Xu, F., Xu, H., Wei, J., Huang, H., & Tang, J. (2019). Effects of cultivation techniques on CH4 emissions, net ecosystem production, and rice yield in a paddy ecosystem. ATMOSPHERIC POLLUTION RESEARCH, 10(1), 274-282. doi: 10.1016/j.apr.2018.08.007

Chandler, T., Shroff, H., Oldenbourg, R., & Rivière, P. L. (2019). Spatio-angular fluorescence microscopy II. Paraxial 4f imaging. doi: https://arxiv.org/pdf/1901.01181v1.pdf

Wishner, K. F., Seibel, B. A., Roman, C., Deutsch, C., Outram, D., Shaw, C. T., Birk, M. A., Mislan, K. A. S., Adams, T. J., Moore, D., & Riley, S. (2018). Ocean deoxygenation and zooplankton: Very small oxygen differences matter. Science Advances, 4(12). doi: 10.1126/sciadv.aau5180

Allard, C. A. H., Decker, F., Weiner, O. D., Toettcher, J. E., & Graziano, B. R. (2018). A size-invariant bud-duration timer enables robustness in yeast cell size control. PLOS ONE, 13(12), e0209301. doi: 10.1371/journal.pone.0209301

Chandler, T., Shroff, H., Oldenbourg, R., & Rivière, P. L. (2018). Spatio-angular fluorescence microscopy I. Basic theory.