Recent MBL Publications

(as of October 21, 2020)

Mukherjee, S., Chaturvedi, P., Rankin, S. A., Fish, M. B., Wlizla, M., Paraiso, K. D., MacDonald, M., Chen, X. T., Weirauch, M. T., Blitz, I. L., Cho, K. W. Y., & Zorn, A. M. (2020). Sox17 and beta-catenin co-occupy Wnt-responsive enhancers to govern the endoderm gene regulatory network. Elife, 9. doi: 10.7554/eLife.58029

Biswas, R., Sonenshein, A. L., & Belitsky, B. R. (2020). Role of GlnR in Controlling Expression of Nitrogen Metabolism Genes in Listeria monocytogenes. Journal of Bacteriology, 202(19). doi: 10.1128/JB.00209-20

Zattara, E. E., & Özpolat, B. D. (2021). Quantifying Cell Proliferation During Regeneration of Aquatic Worms. Methods in Molecular Biology (pp. 163-180): Springer US.

Jiao, F., Cannon, K. S., Lin, Y. C., Gladfelter, A. S., & Scheuring, S. (2020). The hierarchical assembly of septins revealed by high-speed AFM. Nat Commun, 11(1), 5062. doi: 10.1038/s41467-020-18778-x

Sulerud, T., Sami, A. B., Li, G., Kloxin, A., Oakey, J., & Gatlin, J. (2020). Microtubule-dependent pushing forces contribute to long-distance aster movement and centration in Xenopus laevis egg extracts. Mol Biol Cell, mbcE20010088. doi: 10.1091/mbc.E20-01-0088

Meaders, J. L., de Matos, S. N., & Burgess, D. R. (2020). A Pushing Mechanism for Microtubule Aster Positioning in a Large Cell Type. Cell Rep, 33(1), 108213. doi: 10.1016/j.celrep.2020.108213

Kusick, G. F., Chin, M., Raychaudhuri, S., Lippmann, K., Adula, K. P., Hujber, E. J., Vu, T., Davis, M. W., Jorgensen, E. M., & Watanabe, S. (2020). Synaptic vesicles transiently dock to refill release sites. Nat Neurosci. doi: 10.1038/s41593-020-00716-1

Dong, Y. R., Sanford, R. A., Boyanov, M. I., Flynn, T. M., O’Loughlin, E. J., Kemner, K. M., George, S., Fouke, K. E., Li, S. Y., Huang, D. M., Li, S. Z., & Fouke, B. W. (2020). Controls on Iron Reduction and Biomineralization over Broad Environmental Conditions as Suggested by the Firmicutes Orenia metallireducens Strain Z6. ENVIRONMENTAL SCIENCE & TECHNOLOGY, 54(16), 10128-10140. doi: 10.1021/acs.est.0c03853

Barske, L., Fabian, P., Hirschberger, C., Jandzik, D., Square, T., Xu, P., Nelson, N., Yu, H. V., Medeiros, D. M., Gillis, J. A., & Crump, J. G. (2020). Evolution of vertebrate gill covers via shifts in an ancient Pou3f3 enhancer. Proc Natl Acad Sci U S A. doi: 10.1073/pnas.2011531117

Katz, H. R., Menelaou, E., & Hale, M. E. (2020). Morphological and physiological properties of Rohon-Beard neurons along the zebrafish spinal cord. J Comp Neurol. doi: 10.1002/cne.25033

Liu, D., Ma, Q., Valiela, I., Anderson, D. M., Keesing, J. K., Gao, K., Zhen, Y., Sun, X., & Wang, Y. (2020). Role of C4 carbon fixation in Ulva prolifera, the macroalga responsible for the world’s largest green tides. Commun Biol, 3(1), 494. doi: 10.1038/s42003-020-01225-4

Quigley, C. T. C., Capistrant-Fossa, K. A., Morrison, H. G., Johnson, L. E., Morozov, A., Hertzberg, V. S., & Brawley, S. H. (2020). Bacterial Communities Show Algal Host (Fucus spp.)/Zone Differentiation Across the Stress Gradient of the Intertidal Zone (Vol. 11): Frontiers Media SA.

Putland, R., Rogers, L., Giuffrida, B., & Mensinger, A. (2020). Anesthetic effects of AQUI-S 20E® (eugenol) on the afferent neural activity of the oyster toadfish (Opsanus tau). Fish Physiol Biochem. doi: 10.1007/s10695-020-00874-w

Naert, T., Tulkens, D., Edwards, N. A., Carron, M., Shaidani, N.-I., Wlizla, M., Boel, A., Demuynck, S., Horb, M. E., Coucke, P., Willaert, A., Zorn, A. M., & Vleminckx, K. (2020). Maximizing CRISPR/Cas9 phenotype penetrance applying predictive modeling of editing outcomes in Xenopus and zebrafish embryos. SCIENTIFIC REPORTS, 10(1), 14662. doi: 10.1038/s41598-020-71412-0

Zhao, S., Zettler, E. R., Amaral-Zettler, L. A., & Mincer, T. J. (2020). Microbial carrying capacity and carbon biomass of plastic marine debris. ISME J. doi: 10.1038/s41396-020-00756-2

Goebel, W. L. H., Colin, S. P., Costello, J. H., Gemmell, B. J., & Sutherland, K. R. (2020). Scaling of ctenes and consequences for swimming performance in the ctenophorePleurobrachia bachei. INVERTEBRATE BIOLOGY(ARTN e12297). doi: 10.1111/ivb.12297

Rastetter, E. B., Kling, G. W., Shaver, G. R., Crump, B. C., Gough, L., & Griffin, K. L. (2020). Ecosystem Recovery from Disturbance is Constrained by N Cycle Openness, Vegetation-Soil N Distribution, Form of N Losses, and the Balance Between Vegetation and Soil-Microbial Processes. ECOSYSTEMS. doi: 10.1007/s10021-020-00542-3

Wang, F., Eagle, M., Kroeger, K. D., Spivak, A. C., & Tang, J. (2020). Plant biomass and rates of carbon dioxide uptake are enhanced by successful restoration of tidal connectivity in salt marshes. Sci Total Environ, 750, 141566. doi: 10.1016/j.scitotenv.2020.141566

Sabin, K. Z., & Echeverri, K. (2020). The role of the immune system during regeneration of the central nervous system. J Immunol Regen Med, 7. doi: 10.1016/j.regen.2019.100023

Mäthger, L. M., Zhao, K., & Herbst, L. (2020). Photoreceptors in skate are arranged to allow for a broad horizontal field of view. J Comp Neurol. doi: 10.1002/cne.25014

Krueger, J. N., Wilmot, J. H., Teratani-Ota, Y., Puhger, K. R., Nemes, S. E., Crestani, A. P., Lafreniere, M. M., & Wiltgen, B. J. (2020). Amnesia for context fear is caused by widespread disruption of hippocampal activity. Neurobiology of Learning and Memory, 107295. doi:

Wiechmann, A. F., Martin, T. A., & Horb, M. E. (2020). CRISPR/Cas9 mediated mutation of the mtnr1a melatonin receptor gene causes rod photoreceptor degeneration in developing Xenopus tropicalis. Sci Rep, 10(1), 13757. doi: 10.1038/s41598-020-70735-2

Sevillano, M., Dai, Z., Calus, S., Bautista-de Los Santos, Q. M., Eren, A. M., van der Wielen, P. W. J. J., Ijaz, U. Z., & Pinto, A. J. (2020). Differential prevalence and host-association of antimicrobial resistance traits in disinfected and non-disinfected drinking water systems. Sci Total Environ, 749, 141451. doi: 10.1016/j.scitotenv.2020.141451

Vanni, C., Schechter, M. S., Acinas, S. G., Barberán, A., Buttigieg, P. L., Casamayor, E. O., Delmont, T. O., Duarte, C. M., Eren, A. M., Finn, R. D., Kottmann, R., Mitchell, A., Sanchez, P., Siren, K., Steinegger, M., Glöckner, F. O., & Fernandez-Guerra, A. Light into the darkness: Unifying the known and unknown coding sequence space in microbiome analyses. doi: 10.1101/2020.06.30.180448

Licznerski, P., Park, H. A., Rolyan, H., Chen, R., Mnatsakanyan, N., Miranda, P., Graham, M., Wu, J., Cruz-Reyes, N., Mehta, N., Sohail, S., Salcedo, J., Song, E., Effman, C., Effman, S., Brandao, L., Xu, G. N., Braker, A., Gribkoff, V. K., Levy, R. J., & Jonas, E. A. (2020). ATP Synthase c-Subunit Leak Causes Aberrant Cellular Metabolism in Fragile X Syndrome. Cell. doi: 10.1016/j.cell.2020.07.008

Mark Welch, J. L., Ramírez-Puebla, S. T., & Borisy, G. G. (2020). Oral Microbiome Geography: Micron-Scale Habitat and Niche. Cell Host Microbe, 28(2), 160-168. doi: 10.1016/j.chom.2020.07.009

Begovich, K., & Wilhelm, J. E. (2020). An In Vitro Assembly System Identifies Roles for RNA Nucleation and ATP in Yeast Stress Granule Formation. Mol Cell. doi: 10.1016/j.molcel.2020.07.017

Lebeaux, R. M., Coker, M. O., Dade, E. F., Palys, T. J., Morrison, H. G., Ross, B. D., Baker, E. R., Karagas, M. R., Madan, J. C., & Hoen, A. G. (2020). The Infant Gut Resistome is Associated with E. coli and Early-life Exposures. doi: 10.21203/

Lynum, C. A., Bulseco, A. N., Dunphy, C. M., Osborne, S. M., Vineis, J. H., & Bowen, J. L. (2020). Microbial Community Response to a Passive Salt Marsh Restoration. ESTUARIES AND COASTS, 43(6), 1439-1455. doi: 10.1007/s12237-020-00719-y

Zheng, H., Zhou, L., Wei, J., Tang, Q., Zou, Y., Tang, J., & Xu, H. (2020). Cover crops and chicken grazing in a winter fallow field improve soil carbon and nitrogen contents and decrease methane emissions. Sci Rep, 10(1), 12607. doi: 10.1038/s41598-020-69407-y

Domeignoz-Horta, L. A., Pold, G., Liu, X. J. A., Frey, S. D., Melillo, J. M., & DeAngelis, K. M. (2020). Microbial diversity drives carbon use efficiency in a model soil. Nat Commun, 11(1), 3684. doi: 10.1038/s41467-020-17502-z

Watterson, W. J., Tanyeri, M., Watson, A. R., Cham, C. M., Shan, Y., Chang, E. B., Eren, A. M., & Tay, S. (2020). Droplet-based high-throughput cultivation for accurate screening of antibiotic resistant gut microbes. Elife, 9(ARTN e56998). doi: 10.7554/eLife.56998

Yoshii, A., & Green, W. N. (2020). Editorial: Role of Protein Palmitoylation in Synaptic Plasticity and Neuronal Differentiation. Front Synaptic Neurosci, 12, 27. doi: 10.3389/fnsyn.2020.00027

Crawford, K., Diaz Quiroz, J. F., Koenig, K. M., Ahuja, N., Albertin, C. B., & Rosenthal, J. J. C. (2020). Highly Efficient Knockout of a Squid Pigmentation Gene. Current Biology. doi: 10.1016/j.cub.2020.06.099

Longo, W. M., Huang, Y., Russell, J. M., Morrill, C., Daniels, W. C., Giblin, A. E., & Crowther, J. (2020). Insolation and greenhouse gases drove Holocene winter and spring warming in Arctic Alaska. Quaternary Science Reviews, 242(106438), 106438-106438. doi: 10.1016/j.quascirev.2020.106438

Yamamoto, W., & Yuste, R. (2020). “Whole-body imaging of neural and muscle activity during behavior in Hydra vulgaris: effect of osmolarity on contraction bursts”. eNeuro. doi: 10.1523/ENEURO.0539-19.2020

Funikov, S. Y., Rezvykh, A. P., Kulikova, D. A., Zelentsova, E. S., Protsenko, L. A., Chuvakova, L. N., Tyukmaeva, V. I., Arkhipova, I. R., & Evgen’ev, M. B. (2020). Adaptation of gene loci to heterochromatin in the course of Drosophila evolution is associated with insulator proteins. Sci Rep, 10(1), 11893. doi: 10.1038/s41598-020-68879-2
Roden, C., & Gladfelter, A. S. (2020). RNA contributions to the form and function of biomolecular condensates. NATURE REVIEWS MOLECULAR CELL BIOLOGY. doi: 10.1038/s41580-020-0264-6

Grettenberger, C. L., McCauley Rench, R. L., Gruen, D. S., Mills, D. B., Carney, C., Brainard, J., Hamasaki, H., Ramirez, R., Watanabe, Y., Amaral-Zettler, L. A., Ohmoto, H., & Macalady, J. L. (2020). Microbial population structure in a stratified, acidic pit lake in the Iberian Pyrite Belt. GEOMICROBIOLOGY JOURNAL, 37(7), 623-634. doi: 10.1080/01490451.2020.1751748

Utter, D. R., Borisy, G. G., Eren, A. M., Cavanaugh, C. M., & Mark Welch, J. L. (2020). Metapangenomics of the oral microbiome provides insights into habitat adaptation and cultivar diversity. doi: 10.1101/2020.05.01.072496

Hanlon, R. T., & McManus, G. (2020). Flamboyant cuttlefish behavior: Camouflage tactics and complex colorful reproductive behavior assessed during field studies at Lembeh Strait, Indonesia. JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY, 529(ARTN 151397). doi: 10.1016/j.jembe.2020.151397

Peredo, E. L., & Cardon, Z. G. (2020). Shared up-regulation and contrasting down-regulation of gene expression distinguish desiccation-tolerant from intolerant green algae. Proc Natl Acad Sci U S A. doi: 10.1073/pnas.1906904117

Rogers, E. T. F., Quraishe, S., Rogers, K. S., Newman, T. A., Smith, P. J. S., & Zheludev, N. (2020). Far-field unlabeled super-resolution imaging with superoscillatory illumination. APL PHOTONICS, 5(6). doi: 10.1063/1.5144918

Townsend, J. P., Gemmell, B. J., Sutherland, K. R., Colin, S. P., & Costello, J. H. (2020). Ink Release and Swimming Behavior in the Oceanic Ctenophore Eurhamphaea vexilligera. Biol Bull, 238(3), 206-213. doi: 10.1086/709504

P. O’Connell, C., Collatos, C., Picha, N. D., & He, P. (2020). A new animal-borne imaging system for studying the behavioral ecology of small sharks: laboratory and field evaluations. MARINE AND FRESHWATER BEHAVIOUR AND PHYSIOLOGY, 53(3), 131-150. doi: 10.1080/10236244.2020.1782753

Begovich, K., Vu, A. Q., Yeo, G., & Wilhelm, J. E. (2020). Conserved metabolite regulation of stress granule assembly via AdoMet. J Cell Biol, 219(8). doi: 10.1083/jcb.201904141

Hernández, C. M., van Daalen, S. F., Caswell, H., Neubert, M. G., & Gribble, K. E. (2020). A demographic and evolutionary analysis of maternal effect senescence. Proc Natl Acad Sci U S A. doi: 10.1073/pnas.1919988117

Guo, M., Li, Y., Su, Y., Lambert, T., Nogare, D. D., Moyle, M. W., Duncan, L. H., Ikegami, R., Santella, A., Rey-Suarez, I., Green, D., Beiriger, A., Chen, J., Vishwasrao, H., Ganesan, S., Prince, V., Waters, J. C., Annunziata, C. M., Hafner, M., Mohler, W. A., Chitnis, A. B., Upadhyaya, A., Usdin, T. B., Bao, Z., Colón-Ramos, D., La Riviere, P., Liu, H., Wu, Y., & Shroff, H. (2020). Rapid image deconvolution and multiview fusion for optical microscopy. Nat Biotechnol. doi: 10.1038/s41587-020-0560-x

Murphy, A. E., Bulseco, A. N., Ackerman, R., Vineis, J. H., & Bowen, J. L. (2020). Sulphide addition favours respiratory ammonification (DNRA) over complete denitrification and alters the active microbial community in salt marsh sediments. Environmental Microbiology, 22(6), 2124-2139. doi: 10.1111/1462-2920.14969

Laissue, P. P., Roberson, L., Gu, Y., Qian, C., & Smith, D. J. (2020). Long-term imaging of the photosensitive, reef-building coral Acropora muricata using light-sheet illumination. Sci Rep, 10(1), 10369. doi: 10.1038/s41598-020-67144-w