Recent MBL Publications

(as of April 15, 2019)

Bhatnagar, S., Cowley, E. S., Kopf, S. H., Perez Castro, S., Kearney, S., Dawson, S., Hanselmann, K., & Ruff, S. E. (2019). Microbial community dynamics and coexistence in a sulfide-driven phototrophic bloom. bioRxiv, 604504. doi: 10.1101/604504Curr Biol. doi: 10.1016/j.cub.2019.02.061

Field, C. M., Pelletier, J. F., & Mitchison, T. (2019). Disassembly of actin and keratin networks by Aurora B kinase at the midplane of cleaving Xenopus laevis eggs. bioRxiv, 513200. doi: 10.1101/513200

Nelson, J. A., Johnson, D. S., Deegan, L. A., Spivak, A. C., & Sommer, N. R. (2019). Feedbacks Between Nutrient Enrichment and Geomorphology Alter Bottom-Up Control on Food Webs. ECOSYSTEMS, 22(2), 229-242. doi: 10.1007/s10021-018-0265-x

Trammell, T. L. E., Pataki, D. E., Still, C. J., Ehleringer, J. R., Avolio, M. L., Bettez, N., Cavender-Bares, J., Groffman, P. M., Grove, M., Hall, S. J., Heffernan, J., Hobbie, S. E., Larson, K. L., Morse, J. L., Neill, C., Nelson, K. C., O’Neil-Dunne, J., Pearse, W. D., Chowdhury, R. R., Steele, M., & Wheeler, M. M. (2019). Climate and lawn management interact to control C4 plant distribution in residential lawns across seven U.S. cities. Ecol Appl, e01884. doi: 10.1002/eap.1884

Fujioka, Y., Satoh, A. O., Horiuchi, K., Fujioka, M., Tsutsumi, K., Sasaki, J., Nepal, P., Kashiwagi, S., Paudel, S., Nishide, S., Nanbo, A., Sasaki, T., & Ohba, Y. (2019). A peptide derived from phosphoinositide 3-kinase inhibits endocytosis and influenza virus infection. Cell Struct Funct. doi: 10.1247/csf.19001

Curasi, S. R., Parker, T. C., Rocha, A. V., Moody, M. L., Tang, J., & Fetcher, N. (2019). Differential responses of ecotypes to climate in a ubiquitous arctic sedge: implications for future ecosystem C cycling. New Phytol. doi: 10.1111/nph.15790

Gladfelter, A. S., James, T. Y., & Amend, A. S. (2019). Marine fungi. Current Biology, 29(6), R191-R195. doi: 10.1016/j.cub.2019.02.009

Mo, Q., Li, Z., Sayer, E. J., Lambers, H., Li, Y., Zou, B., Tang, J., Heskel, M., Ding, Y., & Wang, F. (2019). Foliar phosphorus fractions reveal how tropical plants maintain photosynthetic rates despite low soil phosphorus availability. FUNCTIONAL ECOLOGY, 33(3), 503-513. doi: 10.1111/1365-2435.13252

MacCord, K. (2019). The impacts of assumptions on theories of tooth development and evolution at the turn of the nineteenth century. Hist Philos Life Sci, 41(1), 12. doi: 10.1007/s40656-019-0245-2

MacCord, K., & Maienschein, J. (2019). Understanding regeneration at different scales. Elife, 8. doi: 10.7554/elife.46569

Mitchison, T. J. (2019). Colloid osmotic parameterization and measurement of subcellular crowding. Mol Biol Cell, 30(2), 173-180. doi: 10.1091/mbc.E18-09-0549

Pervolaraki, E., Tyson, A. L., Pibiri, F., Poulter, S. L., Reichelt, A. C., Rodgers, R. J., Clapcote, S. J., Lever, C., Andreae, L. C., & Dachtler, J. (2019). The within-subject application of diffusion tensor MRI and CLARITY reveals brain structural changes in Nrxn2 deletion mice. Molecular Autism, 10. doi: 10.1186/s13229-019-0261-9

Schnell, A. K., Jozet-Alves, C., Hall, K. C., Radday, L., & Hanlon, R. T. (2019). Fighting and mating success in giant Australian cuttlefish is influenced by behavioural lateralization. Proceedings of the Royal Society B: Biological Sciences, 286(1898), 20182507-20182507. doi: 10.1098/rspb.2018.2507

Tamm, S. L. (2019). Defecation by the ctenophore Mnemiopsis leidyi occurs with an ultradian rhythm through a single transient anal pore. INVERTEBRATE BIOLOGY. doi: 10.1111/ivb.12236

Zheng, Y., Heng, P., Conte, M. H., Vachula, R. S., & Huang, Y. (2019). Systematic chemotaxonomic profiling and novel paleotemperature indices based on alkenones and alkenoates: Potential for disentangling mixed species input. Organic Geochemistry, 128, 26-41. doi: 10.1016/j.orggeochem.2018.12.008

Amend, A., Burgaud, G., Cunliffe, M., Edgcomb, V. P., Ettinger, C. L., Gutiérrez, M. H., Heitman, J., Hom, E. F. Y., Ianiri, G., Jones, A. C., Kagami, M., Picard, K. T., Quandt, C. A., Raghukumar, S., Riquelme, M., Stajich, J., Vargas-Muñiz, J., Walker, A. K., Yarden, O., & Gladfelter, A. S. (2019). Fungi in the Marine Environment: Open Questions and Unsolved Problems. MBIO, 10(2). doi: 10.1128/mBio.01189-18

Case, L. B., Zhang, X., Ditlev, J. A., & Rosen, M. K. (2019). Stoichiometry controls activity of phase-separated clusters of actin signaling proteins. SCIENCE, 363(6431), 1093-1097. doi: 10.1126/science.aau6313

Lamborg, C., Mincer, T., Buchanan, W., Collins, C., Swarr, G., Ganguli, P., Whalen, K., Bothner, M., & Valiela, I. (2019). Mercury speciation and retention in a salt marsh undergoing long-term fertilization. ESTUARINE COASTAL AND SHELF SCIENCE, 218, 188-196. doi: 10.1016/j.ecss.2018.11.031

McKay, L. J., Dlakić, M., Fields, M. W., Delmont, T. O., Eren, A. M., Jay, Z. J., Klingelsmith, K. B., Rusch, D. B., & Inskeep, W. P. (2019). Co-occurring genomic capacity for anaerobic methane and dissimilatory sulfur metabolisms discovered in the Korarchaeota. Nat Microbiol. doi: 10.1038/s41564-019-0362-4

Nagashima, R., Hibino, K., Ashwin, S. S., Babokhov, M., Fujishiro, S., Imai, R., Nozaki, T., Tamura, S., Tani, T., Kimura, H., Shribak, M., Kanemaki, M. T., Sasai, M., & Maeshima, K. (2019). Single nucleosome imaging reveals loose genome chromatin networks via active RNA polymerase II. J Cell Biol. doi: 10.1083/jcb.201811090

Reveillaud, J., Bordenstein, S. R., Cruaud, C., Shaiber, A., Esen, Ö. C., Weill, M., Makoundou, P., Lolans, K., Watson, A. R., Rakotoarivony, I., Bordenstein, S. R., & Eren, A. M. (2019). The Wolbachia mobilome in Culex pipiens includes a putative plasmid. Nat Commun, 10(1), 1051. doi: 10.1038/s41467-019-08973-w

Sabin, K. Z., Jiang, P., Gearhart, M. D., Stewart, R., & Echeverri, K. (2019). AP-1cFos/JunB/miR-200a regulate the pro-regenerative glial cell response during axolotl spinal cord regeneration. Communications Biology, 2(1), 91. doi: 10.1038/s42003-019-0335-4

Stewart, L. C., Algar, C. K., Fortunato, C. S., Larson, B. I., Vallino, J. J., Huber, J. A., Butterfield, D. A., & Holden, J. F. (2019). Fluid geochemistry, local hydrology, and metabolic activity define methanogen community size and composition in deep-sea hydrothermal vents. ISME J. doi: 10.1038/s41396-019-0382-3

Strandwitz, P., Kim, K. H., Terekhova, D., Liu, J. K., Sharma, A., Levering, J., McDonald, D., Dietrich, D., Ramadhar, T. R., Lekbua, A., Mroue, N., Liston, C., Stewart, E. J., Dubin, M. J., Zengler, K., Knight, R., Gilbert, J. A., Clardy, J., & Lewis, K. (2019). GABA-modulating bacteria of the human gut microbiota. Nat Microbiol, 4(3), 396-403. doi: 10.1038/s41564-018-0307-3

Wang, F., Kroeger, K. D., Gonneea, M. E., Pohlman, J. W., & Tang, J. (2019). Water salinity and inundation control soil carbon decomposition during salt marsh restoration: An incubation experiment. Ecol Evol, 9(4), 1911-1921. doi: 10.1002/ece3.4884

Williams, T. L., Senft, S. L., Yeo, J., Martín-Martínez, F. J., Kuzirian, A. M., Martin, C. A., DiBona, C. W., Chen, C. T., Dinneen, S. R., Nguyen, H. T., Gomes, C. M., Rosenthal, J. J. C., MacManes, M. D., Chu, F., Buehler, M. J., Hanlon, R. T., & Deravi, L. F. (2019). Dynamic pigmentary and structural coloration within cephalopod chromatophore organs. Nat Commun, 10(1), 1004. doi: 10.1038/s41467-019-08891-x

Wilts, B. D., Clode, P. L., Patel, N. H., & Schroeder-Turk, G. E. (2019). Nature’s functional nanomaterials: Growth or self-assembly? MRS BULLETIN, 44(2), 106-112. doi: 10.1557/mrs.2019.21

Sutherland, K. R., Gemmell, B. J., Colin, S. P., & Costello, J. H. (2019). Propulsive design principles in a multi-jet siphonophore. J Exp Biol. doi: 10.1242/jeb.198242

Arkhipova, I. R., & Yushenova, I. A. (2019). Giant transposons in eukaryotes: Is bigger better? Genome Biol Evol. doi: 10.1093/gbe/evz041

Dobay, A., Haas, C., Fucile, G., Downey, N., Morrison, H. G., Kratzer, A., & Arora, N. (2019). Microbiome-based body fluid identification of samples exposed to indoor conditions. Forensic Sci Int Genet, 40, 105-113. doi: 10.1016/j.fsigen.2019.02.010

Trigodet, F., Larche, N., Morrison, H. G., Jebbar, M., Thierry, D., & Maignien, L. (2019). Electroactive Bacteria Associated With Stainless Steel Ennoblement in Seawater. FRONTIERS IN MICROBIOLOGY, 10(ARTN 170). doi: 10.3389/fmicb.2019.00170

Vachula, R. S., Huang, Y., Longo, W. M., Dee, S. G., Daniels, W. C., & Russell, J. M. (2019). Evidence of Ice Age humans in eastern Beringia suggests early migration to North America. Quaternary Science Reviews, 205, 35-44. doi: 10.1016/j.quascirev.2018.12.003

Bennice, C. O., Rayburn, A. P., Brooks, W. R., & Hanlon, R. T. (2019). Fine-scale habitat partitioning facilitates sympatry between two octopus species in a shallow Florida lagoon. MARINE ECOLOGY PROGRESS SERIES, 609, 151-161. doi: 10.3354/meps12845

Glodzik, L., Rusinek, H., Tsui, W., Pirraglia, E., Kim, H. J., Deshpande, A., Li, Y., Storey, P., Randall, C., Chen, J. Y., Osorio, R. S., Butler, T., Tanzi, E., McQuillan, M., Harvey, P., Williams, S. K., Ogedegbe, G., Babb, J. S., & de Leon, M. J. (2019). Different Relationship Between Systolic Blood Pressure and Cerebral Perfusion in Subjects With and Without Hypertension. Hypertension, 73(1), 197-205. doi: 10.1161/HYPERTENSIONAHA.118.11233

Otopalik, A. G., Pipkin, J., & Marder, E. (2019). Neuronal morphologies built for reliable physiology in a rhythmic motor circuit. Elife, 8. doi: 10.7554/eLife.41728

Richter, N., Longo, W. M., George, S., Shipunova, A., Huang, Y., & Amaral-Zettler, L. (2019). Phylogenetic diversity in freshwater-dwelling Isochrysidales haptophytes with implications for alkenone production. Geobiology. doi: 10.1111/gbi.12330

Battefeld, A., Popovic, M. A., van der Werf, D., & Kole, M. H. P. (2019). A Versatile and Open-Source Rapid LED Switching System for One-Photon Imaging and Photo-Activation. FRONTIERS IN CELLULAR NEUROSCIENCE, 12. doi: 10.3389/fncel.2018.00530

Hanslik, K. L., Allen, S. R., Harkenrider, T. L., Fogerson, S. M., Guadarrama, E., & Morgan, J. R. (2019). Regenerative capacity in the lamprey spinal cord is not altered after a repeated transection. PLOS ONE, 14(1), e0204193. doi: 10.1371/journal.pone.0204193

Youn, S., Okinaka, C., & Mäthger, L. M. (2019). Elaborate pupils in skates may help camouflage the eye. J Exp Biol. doi: 10.1242/jeb.195966

Alberti, S., Gladfelter, A., & Mittag, T. (2019). Considerations and Challenges in Studying Liquid-Liquid Phase Separation and Biomolecular Condensates. Cell, 176(3), 419-434. doi: 10.1016/j.cell.2018.12.035

Bock, M. J., Jarvis, G. C., Corey, E. L., Stone, E. E., & Gribble, K. E. (2019). Maternal age alters offspring lifespan, fitness, and lifespan extension under caloric restriction: Supplementary Information. doi: 10.1101/527770

Tan, S., Chen, B., Zheng, H., Xu, F., Xu, H., Wei, J., Huang, H., & Tang, J. (2019). Effects of cultivation techniques on CH4 emissions, net ecosystem production, and rice yield in a paddy ecosystem. ATMOSPHERIC POLLUTION RESEARCH, 10(1), 274-282. doi: 10.1016/j.apr.2018.08.007

Chandler, T., Shroff, H., Oldenbourg, R., & Rivière, P. L. (2019). Spatio-angular fluorescence microscopy II. Paraxial 4f imaging. doi: https://arxiv.org/pdf/1901.01181v1.pdf

Wishner, K. F., Seibel, B. A., Roman, C., Deutsch, C., Outram, D., Shaw, C. T., Birk, M. A., Mislan, K. A. S., Adams, T. J., Moore, D., & Riley, S. (2018). Ocean deoxygenation and zooplankton: Very small oxygen differences matter. Science Advances, 4(12). doi: 10.1126/sciadv.aau5180

Allard, C. A. H., Decker, F., Weiner, O. D., Toettcher, J. E., & Graziano, B. R. (2018). A size-invariant bud-duration timer enables robustness in yeast cell size control. PLOS ONE, 13(12), e0209301. doi: 10.1371/journal.pone.0209301

Chandler, T., Shroff, H., Oldenbourg, R., & Rivière, P. L. (2018). Spatio-angular fluorescence microscopy I. Basic theory.

Glodzik, L., Rusinek, H., Tsui, W., Pirraglia, E., Kim, H.-J., Deshpande, A., Li, Y., Storey, P., Randall, C., Chen, J., Osorio Ricardo, S., Butler, T., Tanzi, E., McQuillan, M., Harvey, P., Williams Stephen, K., Ogedegbe, G., Babb James, S., & de Leon Mony, J. (2019). Different Relationship Between Systolic Blood Pressure and Cerebral Perfusion in Subjects With and Without Hypertension. Hypertension, 73(1), 197-205. doi: 10.1161/HYPERTENSIONAHA.118.11233

Hubbard, C. J., Li, B., McMinn, R., Brock, M. T., Maignien, L., Ewers, B. E., Kliebenstein, D., & Weinig, C. (2018). The effect of rhizosphere microbes outweighs host plant genetics in reducing insect herbivory. Mol Ecol. doi: 10.1111/mec.14989

Pedrosa-Pamies, R., Conte, M. H., Weber, J. C., & Johnson, R. (2018). Carbon cycling in the Sargasso Sea water column: Insights from lipid biomarkers in suspended particles. PROGRESS IN OCEANOGRAPHY, 168, 248-278. doi: 10.1016/j.pocean.2018.08.005

Zheng, H., Wang, X., Li, Y., Huang, G., Tang, Q., & Tang, J. (2018). Contributions of photosynthetic organs to the seed yield of hybrid rice: the effects of gibberellin application examined by carbon isotope technology. SEED SCIENCE AND TECHNOLOGY, 46(3), 533-546. doi: 10.15258/sst.2018.46.3.10

Edzuka, T., & Goshima, G. (2018). Drosophila kinesin-8 stabilizes the kinetochore-microtubule interaction. J Cell Biol. doi: 10.1083/jcb.201807077

Faber, D. S., & Pereda, A. E. (2018). Two Forms of Electrical Transmission Between Neurons. Frontiers in Molecular Neuroscience, 11. doi: 10.3389/fnmol.2018.00427

Montiel-Gonzalez, M. F., Diaz Quiroz, J. F., & Rosenthal, J. J. C. (2018). Current strategies for Site-Directed RNA Editing using ADARs. Methods. doi: 10.1016/j.ymeth.2018.11.016

Navarro, G., Sharma, A., Dugas, L. R., Forrester, T., Gilbert, J. A., & Layden, B. T. (2018). Gut microbial features can predict host phenotype response to protein deficiency. Physiol Rep, 6(23), e13932. doi: 10.14814/phy2.13932

Schwartz, M. H., Wang, H., Pan, J. N., Clark, W. C., Cui, S., Eckwahl, M. J., Pan, D. W., Parisien, M., Owens, S. M., Cheng, B. L., Martinez, K., Xu, J., Chang, E. B., Pan, T., & Eren, A. M. (2018). Microbiome characterization by high-throughput transfer RNA sequencing and modification analysis. Nat Commun, 9(1), 5353. doi: 10.1038/s41467-018-07675-z

Wang, X., Li, Y., Chen, W., Shi, H., Eren, A. M., Morozov, A., He, C., Luo, G. Z., & Pan, T. (2018). Transcriptome-wide reprogramming of N6-methyladenosine modification by the mouse microbiome. Cell Res. doi: 10.1038/s41422-018-0127-2

Carey, J. C., Kroeger, K. D., Zafari, B., & Tang, J. (2018). Passive experimental warming decouples air and sediment temperatures in a salt marsh. Limnology and Oceanography-Methods, 16(10), 640-648. doi: 10.1002/lom3.10270

Daniels, W. C., Huang, Y., Russell, J. M., & Giblin, A. E. (2018). Effect of continuous light on leaf wax isotope ratios in Betula nana and Eriophorum vaginatum: implications for Arctic paleoclimate reconstructions. Organic Geochemistry, 125, 70-81. doi: 10.1016/j.orggeochem.2018.08.008

Gribble, K. E., Moran, B. M., Jones, S., Corey, E. L., & Mark Welch, D. B. (2018). Congeneric variability in lifespan extension and onset of senescence suggest active regulation of aging in response to low temperature. Exp Gerontol, 114, 99-106. doi: 10.1016/j.exger.2018.10.023

Howard, E. M., Forbrich, I., Giblin, A. E., Lott, D. E., Cahill, K. L., & Stanley, R. H. R. (2018). Using Noble Gases to Compare Parameterizations of Air-Water Gas Exchange and to Constrain Oxygen Losses by Ebullition in a Shallow Aquatic Environment. JOURNAL OF GEOPHYSICAL RESEARCH-BIOGEOSCIENCES, 123(9), 2711-2726. doi: 10.1029/2018JG004441

Hubbard, C. J., Brock, M. T., van Diepen, L. T., Maignien, L., Ewers, B. E., & Weinig, C. (2018). The plant circadian clock influences rhizosphere community structure and function. ISME J, 12(2), 400-410. doi: 10.1038/ismej.2017.172

Iglesias, T. L., Boal, J. G., Frank, M. G., Zeil, J., & Hanlon, R. T. (2018). Cyclic nature of the REM sleep-like state in the cuttlefish Sepia officinalis. J Exp Biol. doi: 10.1242/jeb.174862

Ladau, J., Shi, Y., Jing, X., He, J. S., Chen, L., Lin, X., Fierer, N., Gilbert, J. A., Pollard, K. S., & Chu, H. (2018). Existing Climate Change Will Lead to Pronounced Shifts in the Diversity of Soil Prokaryotes. mSystems, 3(5). doi: 10.1128/mSystems.00167-18

Langdon, E. M., & Gladfelter, A. S. (2018). Probing RNA Structure in Liquid-Liquid Phase Separation Using SHAPE-MaP. Methods Enzymol, 611, 67-79. doi: 10.1016/bs.mie.2018.09.039

Li, J., Wang, G., Mayes, M. A., Allison, S. D., Frey, S. D., Shi, Z., Hu, X. M., Luo, Y., & Melillo, J. M. (2018). Reduced carbon use efficiency and increased microbial turnover with soil warming. Glob Chang Biol. doi: 10.1111/gcb.14517

Liang, A., Zhang, Y., Zhang, X., Yang, X., McLaughlin, N., Chen, X., Guo, Y., Jia, S., Zhang, S., Wang, L., & Tang, J. (2019). Investigations of relationships among aggregate pore structure, microbial biomass, and soil organic carbon in a Mollisol using combined non-destructive measurements and phospholipid fatty acid analysis. SOIL & TILLAGE RESEARCH, 185, 94-101. doi: 10.1016/j.still.2018.09.003

Maxson Jones, K., Ankeny, R. A., & Cook-Deegan, R. (2018). The Bermuda Triangle: The Pragmatics, Policies, and Principles for Data Sharing in the History of the Human Genome Project. J Hist Biol. doi: 10.1007/s10739-018-9538-7

McGreevy, K. M., Heikes, K. L., Kult, S., Tharp, M. E., & Goldstein, B. (2018). Fluorescent Cell Staining Methods for Living Hypsibius exemplaris Embryos. Cold Spring Harb Protoc, 2018(11), pdb.prot106021. doi: 10.1101/pdb.prot106021

Mensinger, A. F., Van Wert, J. C., & Rogers, L. S. (2018). Lateral line sensitivity in free swimming toadfish, Opsanus tau. J Exp Biol. doi: 10.1242/jeb.190587

Steimle, J. D., Rankin, S. A., Slagle, C. E., Bekeny, J., Rydeen, A. B., Chan, S. S. K., Kweon, J., Yang, X. H., Ikegami, K., Nadadur, R. D., Rowton, M., Hoffmann, A. D., Lazarevic, S., Thomas, W., Boyle Anderson, E. A. T., Horb, M. E., Luna-Zurita, L., Ho, R. K., Kyba, M., Jensen, B., Zorn, A. M., Conlon, F. L., & Moskowitz, I. P. (2018). Evolutionarily conserved Tbx5-Wnt2/2b pathway orchestrates cardiopulmonary development. Proc Natl Acad Sci U S A. doi: 10.1073/pnas.1811624115