Recent MBL Publications

As of September 22, 2021

Chancellor, S., Abbo, L., Grasse, B., Sakmar, T., Brown, J. S., Scheel, D., & Santymire, R. M. (2021). Determining the effectiveness of using dermal swabs to evaluate the stress physiology of laboratory cephalopods: a preliminary investigation. Gen Comp Endocrinol, 113903. doi: 10.1016/j.ygcen.2021.113903

Stelzer, C. P., Blommaert, J., Waldvogel, A. M., Pichler, M., Hecox-Lea, B., & Mark Welch, D. B. (2021). Comparative analysis reveals within-population genome size variation in a rotifer is driven by large genomic elements with highly abundant satellite DNA repeat elements. BMC Biol, 19(1), 206. doi: 10.1186/s12915-021-01134-w

Snead, W. T., & Gladfelter, A. S. (2021). Getting droplets into shape. SCIENCE, 373(6560), 1198-1199. doi: 10.1126/science.abl6282

Malchow, R. P., Tchernookova, B. K., Choi, J. I. V., Smith, P. J. S., Kramer, R. H., & Kreitzer, M. A. (2021). Review and Hypothesis: A Potential Common Link Between Glial Cells, Calcium Changes, Modulation of Synaptic Transmission, Spreading Depression, Migraine, and Epilepsy—H+. FRONTIERS IN CELLULAR NEUROSCIENCE, 15, 693095. doi: 10.3389/fncel.2021.693095

Miyoshi, J., Miyoshi, S., Delmont, T. O., Cham, C., Lee, S. T. M., Sakatani, A., Yang, K., Shan, Y., Kennedy, M., Kiefl, E., Yousef, M., Crosson, S., Sogin, M., Antonopoulos, D. A., Eren, A. M., Leone, V., & Chang, E. B. (2021). Early-Life Microbial Restitution Reduces Colitis Risk Promoted by Antibiotic-Induced Gut Dysbiosis in Interleukin 10(-/-) Mice. Gastroenterology, 161(3), 940-+. doi: 10.1053/j.gastro.2021.05.054

MacCord, K., & Maienschein, J. (2021). Explaining Regeneration: Cells and Limbs as Complex Living Systems, Learning From History. Frontiers in Cell and Developmental Biology, 9, 734315. doi: 10.3389/fcell.2021.734315

Chowdhury, P. R., Golas, S. M., Alteio, L. V., Stevens, J. T. E., Billings, A. F., Blanchard, J. L., Melillo, J. M., & DeAngelis, K. M. (2021). The Transcriptional Response of Soil Bacteria to Long-Term Warming and Short-Term Seasonal Fluctuations in a Terrestrial Forest. FRONTIERS IN MICROBIOLOGY, 12, 666558. doi: 10.3389/fmicb.2021.666558

Ma, T., Parker, T., Unger, S., Gewirtzman, J., Fetcher, N., Moody, M. L., & Tang, J. (2021). Responses of root phenology in ecotypes of Eriophorum vaginatum to transplantation and warming in the Arctic. The Science of The Total Environment, 149926. doi: 10.1016/j.scitotenv.2021.149926

Ojha, N., Quiroz, J. F. D., & Rosenthal, J. J. C. (2021). In vitro and in cellula site-directed RNA editing using the λNDD-BoxB system. doi: 10.1016/bs.mie.2021.06.009

Tassia, M. G., David, K. T., Townsend, J. P., & Halanych, K. M. (2021). TIAMMAt: Leveraging biodiversity to revise protein domain models, evidence from innate immunity. Mol Biol Evol. doi: 10.1093/molbev/msab258

Nguyen, Q. P., Karagas, M. R., Madan, J. C., Dade, E., Palys, T. J., Morrison, H. G., Pathmasiri, W. W., McRitche, S., Sumner, S. J., Frost, H. R., & Hoen, A. G. (2021). Associations between the gut microbiome and metabolome in early life. BMC Microbiology, 21(1). doi: 10.1186/s12866-021-02282-3

Daniels, W. C., Russell, J. M., Morrill, C., Longo, W. M., Giblin, A. E., Holland-Stergar, P., Welker, J. M., Wen, X., Hu, A., & Huang, Y. (2021). Lacustrine leaf wax hydrogen isotopes indicate strong regional climate feedbacks in Beringia since the last ice age. Quaternary Science Reviews, 269, 107130. doi: 10.1016/j.quascirev.2021.107130

Yu, E. M., Yoshinaga, T., Jalufka, F. L., Ehsan, H., Mark Welch, D. B., & Kaneko, G. (2021). The complex evolution of the metazoan HSP70 gene family. Sci Rep, 11(1), 17794. doi: 10.1038/s41598-021-97192-9

Hoffert, M., Anderson, R. E., Reveillaud, J., Murphy, L. G., Stepanauskas, R., & Huber, J. A. (2021). Genomic Variation Influences Methanothermococcus Fitness in Marine Hydrothermal Systems. FRONTIERS IN MICROBIOLOGY, 12, 714920. doi: 10.3389/fmicb.2021.714920

Tian, Y., Liu, X., Li, J., Deng, Y., DeGiorgis, J. A., Zhou, S., Caratenuto, A., Minus, M. L., Wan, Y., Xiao, G., & Zheng, Y. (2021). Farm-waste-derived recyclable photothermal evaporator. Cell Reports Physical Science, 100549. doi: 10.1016/j.xcrp.2021.100549

Dibner, R. R., Weaver, A. M., Brock, M. T., Custer, G. F., Morrison, H. G., Maignien, L., & Weinig, C. (2021). Time outweighs the effect of host developmental stage on microbial community composition. FEMS Microbiology Ecology. doi: 10.1093/femsec/fiab102

Liu, X., Tian, Y., Wu, Y., Caratenuto, A., Chen, F., Cui, S., DeGiorgis, J. A., Wan, Y., & Zheng, Y. (2021). Seawater desalination derived entirely from ocean biomass. Journal of Materials Chemistry A. doi: 10.1039/d1ta05068k

Voronezhskaya, E. E., Melnikova, V. I., & Ivashkin, E. G. (2021). Monoamines as Adaptive Developmental Regulators: Phenomenon and Mechanisms of Action. Zhurnal Vysshei Nervnoi Deyatelnosti Imeni I P Pavlova, 71(3), 295-305. doi: 10.31857/S0044467721030126

Brandt, P. D., Varvayanis, S. S., Baas, T., Bolgioni, A. F., Alder, J., Petrie, K. A., Dominguez, I., Brown, A. M., Stayart, C. A., Singh, H., Van Wart, A., Chow, C. S., Mathur, A., Schreiber, B. M., Fruman, D. A., Bowden, B., Wiesen, C. A., Golightly, Y. M., Holmquist, C. E., Arneman, D., Hall, J. D., Hyman, L. E., Gould, K. L., Chalkley, R., Brennwald, P. J., & Layton, R. L. (2021). A cross-institutional analysis of the effects of broadening trainee professional development on research productivity. PLOS BIOLOGY, 19(7). doi: 10.1371/journal.pbio.3000956

Bennice, C. O., Brooks, W. R., & Hanlon, R. T. (2021). Behavioral dynamics provide insight into resource exploitation and habitat coexistence of two octopus species in a shallow Florida lagoon. JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY, 542, 151592. doi: 10.1016/j.jembe.2021.151592

Schnell, A. K., Clayton, N. S., Hanlon, R. T., & Jozet-Alves, C. (2021). Episodic-like memory is preserved with age in cuttlefish. Proc Biol Sci, 288(1957), 20211052. doi: 10.1098/rspb.2021.1052

Hawk, J. D., Wisdom, E. M., Sengupta, T., Kashlan, Z. D., & Colón-Ramos, D. A. (2021). A genetically encoded tool for reconstituting synthetic modulatory neurotransmission and reconnect neural circuits in vivo. Nature Communications, 12(1), 4795. doi: 10.1038/s41467-021-24690-9

El Baidouri, F., Zalar, P., James, T. Y., Gladfelter, A. S., & Amend, A. (2021). Evolution and Physiology of Amphibious Yeasts. Annual Review of Microbiology, 75(1), 1-21. doi: 10.1146/annurev-micro-051421-121352

Budy, P., Pennock, C. A., Giblin, A. E., Luecke, C., White, D. L., & Kling, G. W. (2021). Understanding the effects of climate change via disturbance on pristine arctic lakes-multitrophic level response and recovery to a 12-yr, low-level fertilization experiment. LIMNOLOGY AND OCEANOGRAPHY. doi: 10.1002/lno.11893

Tilvawala, R., Nemmara, V. V., Reyes, A. C., Sorvillo, N., Salinger, A. J., Cherpokova, D., Fukui, S., Gutch, S., Wagner, D., & Thompson, P. R. (2021). The role of SERPIN citrullination in thrombosis. Cell Chemical Biology. doi: 10.1016/j.chembiol.2021.07.009

Cael, B. B., Bisson, K., Conte, M., Duret, M. T., Follett, C. L., Henson, S. A., Honda, M. C., Iversen, M. H., Karl, D. M., Lampitt, R. S., Mouw, C. B., Muller-Karger, F., Pebody, C. A., Smith, K. L., & Talmy, D. (2021). Open Ocean Particle Flux Variability From Surface to Seafloor. GEOPHYSICAL RESEARCH LETTERS, 48(9). doi: 10.1029/2021GL092895

Giblin, A. E., Fulweiler, R. W., & Hopkinson, C. S. (2021). The Role of Marshes in Coastal Nutrient Dynamics and Loss Salt Marshes (pp. 113-154).

Bernhard, A. E., Beltz, J., Giblin, A. E., & Roberts, B. J. (2021). Biogeography of ammonia oxidizers in New England and Gulf of Mexico salt marshes and the potential importance of comammox. ISME Communications, 1(1), 9. doi: 10.1038/s43705-021-00008-0

Coppenrath, K., Tavares, A. L. P., Shaidani, N. I., Wlizla, M., Moody, S. A., & Horb, M. (2021). Generation of a new six1-null line in Xenopus tropicalis for study of development and congenital disease. doi: 10.1101/2021.07.30.454496

Craig, R. J., Yushenova, I. A., Rodriguez, F., & Arkhipova, I. R. (2021). An ancient clade of Penelope-like retroelements with permuted domains is present in the green lineage and protists, and dominates many invertebrate genomes. Mol Biol Evol. doi: 10.1093/molbev/msab225

Woods, B. L., Cannon, K. S., Vogt, E. J. D., Crutchley, J. M., & Gladfelter, A. S. (2021). Interplay of septin amphipathic helices in sensing membrane-curvature and filament bundling. Mol Biol Cell, mbcE20050303. doi: 10.1091/mbc.E20-05-0303

Quince, C., Nurk, S., Raguideau, S., James, R., Soyer, O. S., Summers, J. K., Limasset, A., Eren, A. M., Chikhi, R., & Darling, A. E. (2021). STRONG: metagenomics strain resolution on assembly graphs. Genome Biology, 22(1), 214. doi: 10.1186/s13059-021-02419-7

Richter, N., Russell, J. M., Garfinkel, J., & Huang, Y. S. (2021). Winter-spring warming in the North Atlantic during the last 2000 years: evidence from southwest Iceland. Climate of the Past, 17(3), 1363-1383. doi: 10.5194/cp-17-1363-2021

Liu, X. J. A., Frey, S. D., Melillo, J. M., & DeAngelis, K. M. (2021). Physical protection regulates microbial thermal responses to chronic soil warming. SOIL BIOLOGY & BIOCHEMISTRY, 159(ARTN 108298). doi: 10.1016/j.soilbio.2021.108298

Kanso, E. A., Lopes, R. M., Strickler, J. R., Dabiri, J. O., & Costello, J. H. (2021). Teamwork in the viscous oceanic microscale. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 118(29), e2018193118. doi: 10.1073/pnas.2018193118

Hunter-Cevera, K. R., Hamilton, B. R., Neubert, M. G., & Sosik, H. M. (2021). Seasonal environmental variability drives microdiversity within a coastal Synechococcus population. Environ Microbiol. doi: 10.1111/1462-2920.15666

Gomez, D., Pinna, C., Pairraire, J., Arias, M., Barbut, J., Pomerantz, A., de Marcillac, W. D., Berthier, S., Patel, N., Andraud, C., & Elias, M. (2021). Wing transparency in butterflies and moths: structural diversity, optical properties, and ecological relevance. ECOLOGICAL MONOGRAPHS. doi: 10.1002/ecm.1475

Lebeaux, R. M., Coker, M. O., Dade, E. F., Palys, T. J., Morrison, H. G., Ross, B. D., Baker, E. R., Karagas, M. R., Madan, J. C., & Hoen, A. G. (2021). The infant gut resistome is associated with E. coli and early-life exposures. BMC Microbiol, 21(1), 201. doi: 10.1186/s12866-021-02129-x

Lovas, J. R., & Yuste, R. (2021). Ensemble synchronization in the reassembly of Hydra’s nervous system. Current Biology. doi: 10.1016/j.cub.2021.06.047

Haspel, G., Severi, K. E., Fauci, L. J., Cohen, N., Tytell, E. D., & Morgan, J. R. (2021). Resilience of neural networks for locomotion. The Journal of Physiology. doi: 10.1113/jp279214

Mitchison, T. J., & Field, C. M. (2021). Self-Organization of Cellular Units. Annual Review of Cell and Developmental Biology, 37(1), 1-19. doi: 10.1146/annurev-cellbio-120319-025356

Capistrant‐Fossa, K. A., Morrison, H. G., Engelen, A. H., Quigley, C. T. C., Morozov, A., Serrão, E. A., Brodie, J., Gachon, C. M. M., Badis, Y., Johnson, L. E., Hoarau, G., Abreu, M. H., Tester, P. A., Stearns, L. A., & Brawley, S. H. (2021). The microbiome of the habitat‐forming brown alga Fucus vesiculosus (Phaeophyceae) has similar cross‐atlantic structure that reflects past and present drivers 1. Journal of Phycology(jpy.13194). doi: 10.1111/jpy.13194

Hang, H., Heydari, S., Costello, J. H., & Kanso, E. (2021). Active tail flexion in concert with passive hydrodynamic forces improves swimming speed and efficiency. arXiv:2104.11869

Seibel, B. A., Andres, A., Birk, M. A., Burns, A. L., Shaw, C. T., Timpe, A. W., & Welsh, C. J. (2021). Oxygen supply capacity breathes new life into critical oxygen partial pressure (P-crit). JOURNAL OF EXPERIMENTAL BIOLOGY, 224(8). doi: 10.1242/jeb.242210

Nakamura, M., Yoshida, H., Moriyama, Y., Kawakita, I., Wlizla, M., Takebayashi-Suzuki, K., Horb, M. E., & Suzuki, A. (2021). TGF-beta 1 signaling is essential for tissue regeneration in the Xenopus tadpole tail. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 565, 91-96. doi: 10.1016/j.bbrc.2021.05.082

Pérez Castro, S., Borton, M. A., Regan, K., Hrabe de Angelis, I., Wrighton, K. C., Teske, A. P., Strous, M., & Ruff, S. E. (2021). Degradation of biological macromolecules supports uncultured microbial populations in Guaymas Basin hydrothermal sediments. ISME J. doi: 10.1038/s41396-021-01026-5

Miyoshi, J., Miyoshi, S., Delmont, T. O., Cham, C., Lee, S. T. M., Sakatani, A., Yang, K., Shan, Y., Kennedy, M., Kiefl, E., Yousef, M., Crosson, S., Sogin, M., Antonopoulos, D. A., Eren, A. M., Leone, V., & Chang, E. B. (2021). Early-life microbial restitution reduces colitis risk promoted by antibiotic-induced gut dysbiosis in IL-10-/- mice. Gastroenterology. doi: 10.1053/j.gastro.2021.05.054

Vera, J., & Lippmann, K. (2021). Post-stroke epileptogenesis is associated with altered intrinsic properties of hippocampal pyramidal neurons leading to increased theta resonance. NEUROBIOLOGY OF DISEASE(105425), 105425-105425. doi: 10.1016/j.nbd.2021.105425