Recent MBL Publications

As of May 4, 2021

Liu, X., Tian, Y., Chen, F., Caratenuto, A., DeGiorgis, J. A., Elsonbaty, M., Wan, Y., Ahlgren, R., & Zheng, Y. (2021). An Easy‐to‐Fabricate 2.5D Evaporator for Efficient Solar Desalination. ADVANCED FUNCTIONAL MATERIALS, 2100911. doi: 10.1002/adfm.202100911

Coker, M. O., Laue, H. E., Hoen, A. G., Hilliard, M., Dade, E., Li, Z., Palys, T., Morrison, H. G., Baker, E., Karagas, M. R., & Madan, J. C. (2021). Infant Feeding Alters the Longitudinal Impact of Birth Mode on the Development of the Gut Microbiota in the First Year of Life. FRONTIERS IN MICROBIOLOGY, 12, 642197. doi: 10.3389/fmicb.2021.642197

Klasek, S. A., Brock, M. T., Morrison, H. G., Weinig, C., & Maignien, L. (2021). Soil Microsite Outweighs Cultivar Genotype Contribution to Brassica Rhizobacterial Community Structure. FRONTIERS IN MICROBIOLOGY, 12, 645784. doi: 10.3389/fmicb.2021.645784

Laurinavicius, A., Rasmusson, A., Plancoulaine, B., Shribak, M., & Levenson, R. (2021). Machine-learning-based evaluation of intratumoral heterogeneity and tumor-stroma interface for clinical guidance. The American Journal of Pathology. doi: 10.1016/j.ajpath.2021.04.008

Hayes, C. T., Costa, K. M., Anderson, R. F., Calvo, E., Chase, Z., Demina, L. L., Dutay, J., German, C. R., Heimbürger‐Boavida, L., Jaccard, S. L., Jacobel, A., Kohfeld, K. E., Kravchishina, M. D., Lippold, J., Mekik, F., Missiaen, L., Pavia, F. J., Paytan, A., Pedrosa‐Pamies, R., Petrova, M. V., Rahman, S., Robinson, L. F., Roy‐Barman, M., Sanchez‐Vidal, A., Shiller, A., Tagliabue, A., Tessin, A. C., van Hulten, M., & Zhang, J. (2021). Global Ocean Sediment Composition and Burial Flux in the Deep Sea. Global Biogeochemical Cycles. doi: 10.1029/2020gb006769

Pedrosa-Pamies, R., Parinos, C., Sanchez-Vidal, A., Calafat, A., Canals, M., Velaoras, D., Mihalopoulos, N., Kanakidou, M., Lampadariou, N., & Gogou, A. (2021). Atmospheric and Oceanographic Forcing Impact Particle Flux Composition and Carbon Sequestration in the Eastern Mediterranean Sea: A Three-Year Time-Series Study in the Deep Ierapetra Basin. Frontiers in Earth Science, 9(ARTN 591948). doi: 10.3389/feart.2021.591948

Xu, N., Townsend, J., Costello, J., Colin, S., Gemmell, B., & Dabiri, J. (2021). Developing Biohybrid Robotic Jellyfish (Aurelia aurita) for Free-swimming Tests in the Laboratory and in the Field. Bio-protocol, 11(7). doi: 10.21769/bioprotoc.3974

Gomez, C. M. A., & Delgado, J. P. (2021). Limb regeneration in salamanders: the plethodontid tale. INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY, 65(4-6), 313-321. doi: 10.1387/ijdb.200228jd

Kuehn, E., Clausen, D. S., Null, R. W., Metzger, B. M., Willis, A. D., & Ozpolat, B. D. (2021). Segment number threshold determines juvenile onset of germline cluster proliferation in Platynereis dumerilii. bioRxiv. doi: 10.1101/2021.04.22.439825

Tani, T., Koike-Tani, M., Tran, M. T., Shribak, M., & Levic, S. (2021). Postnatal structural development of mammalian Basilar Membrane provides anatomical basis for the maturation of tonotopic maps and frequency tuning. SCIENTIFIC REPORTS, 11(1). doi: 10.1038/s41598-021-87150-w

Mitchison‐Field, L. M. Y., & Gladfelter, A. S. (2021). Culturing and Multiplexed Time‐Lapse Imaging of Fungal Isolates from Marine and Coastal Environments. Current Protocols, 1(4), e94. doi: 10.1002/cpz1.94

Mueller, R. L., Combs, B., Alhadidy, M. M., Brady, S. T., Morfini, G. A., & Kanaan, N. M. (2021). Tau: A Signaling Hub Protein. Frontiers in Molecular Neuroscience, 14, 647054. doi: 10.3389/fnmol.2021.647054

Tendolkar, A., Pomerantz, A. F., Heryanto, C., Shirk, P. D., Patel, N. H., & Martin, A. (2021). Ultrabithorax Is a Micromanager of Hindwing Identity in Butterflies and Moths. Frontiers in Ecology and Evolution, 9, 643661. doi: 10.3389/fevo.2021.643661

Hoover, A. P., Xu, N. W., Gemmell, B. J., Colin, S. P., Costello, J. H., Dabiri, J. O., & Miller, L. A. (2021). Neuromechanical wave resonance in jellyfish swimming. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 118(11). doi: 10.1073/pnas.2020025118

Roman-Vendrell, C., Medeiros, A. T., Sanderson, J. B., Jiang, H., Bartels, T., & Morgan, J. R. (2021). Effects of Excess Brain-Derived Human alpha-Synuclein on Synaptic Vesicle Trafficking. Frontiers in Neuroscience, 15. doi: 10.3389/fnins.2021.639414

Tchernookova, B. K., Gongwer, M. W., George, A., Goeglein, B., Powell, A. M., Caringal, H. L., Leuschner, T., Phillips, A. G., Schantz, A. W., Kiedrowski, L., Chappell, R., Kreitzer, M. A., & Malchow, R. P. (2021). ATP-mediated increase in H+ flux from retinal Muller cells: a role for Na+/H+ exchange. Journal of Neurophysiology, 125(1), 184-198. doi: 10.1152/jn.00546.2020

Squyres, G. R., Holmes, M. J., Barger, S. R., Pennycook, B. R., Ryan, J., Yan, V. T., & Garner, E. C. (2021). Single-molecule imaging reveals that Z-ring condensation is essential for cell division in Bacillus subtilis. Nat Microbiol. doi: 10.1038/s41564-021-00878-z

Vitkunaite, A., Laurinaviciene, A., Plancoulaine, B., Rasmusson, A., Levenson, R., Shribak, M., & Laurinavicius, A. (2021). Intranuclear birefringent inclusions in paraffin sections by polychromatic polarization microscopy. Sci Rep, 11(1), 6275. doi: 10.1038/s41598-021-85667-8

Schön, I., Rodriguez, F., Dunn, M., Martens, K., Shribak, M., & Arkhipova, I. R. (2021). A Survey of Transposon Landscapes in the Putative Ancient Asexual Ostracod Darwinula stevensoni. Genes, 12(3), 401. doi: 10.3390/genes12030401

Torres, J. P., Lin, Z., Watkins, M., Salcedo, P. F., Baskin, R. P., Elhabian, S., Safavi-Hemami, H., Taylor, D., Tun, J., Concepcion, G. P., Saguil, N., Yanagihara, A. A., Fang, Y., McArthur, J. R., Tae, H. S., Finol-Urdaneta, R. K., Özpolat, B. D., Olivera, B. M., & Schmidt, E. W. (2021). Small-molecule mimicry hunting strategy in the imperial cone snail, Conus imperialis. Sci Adv, 7(11). doi: 10.1126/sciadv.abf2704

Howarth, R. W., Chan, F., Swaney, D. P., Marino, R. M., & Hayn, M. (2021). Role of external inputs of nutrients to aquatic ecosystems in determining prevalence of nitrogen vs. phosphorus limitation of net primary productivity. BIOGEOCHEMISTRY. doi: 10.1007/s10533-021-00765-z

Melillo, J. M. (2021). Disruption of the global nitrogen cycle: A grand challenge for the twenty-first century. AMBIO, 1-5. doi: 10.1007/s13280-020-01429-2

Kivenson, V., Paul, B. G., & Valentine, D. L. (2021). An ecological basis for dual genetic code expansion in marine deltaproteobacteria. bioRxiv, 2021.2003.2015.435355. doi: 10.1101/2021.03.15.435355

Keenen, M. M., Brown, D., Brennan, L. D., Renger, R., Khoo, H., Carlson, C. R., Huang, B., Grill, S. W., Narlikar, G. J., & Redding, S. (2021). HP1 proteins compact DNA into mechanically and positionally stable phase separated domains. Elife, 10. doi: 10.7554/eLife.64563

Sugizaki, A., Sato, K., Chiba, K., Saito, K., Kawagishi, M., Tomabechi, Y., Mehta, S. B., Ishii, H., Sakai, N., Shirouzu, M., Tani, T., & Terada, S. (2021). POLArIS, a versatile probe for molecular orientation, revealed actin filaments associated with microtubule asters in early embryos. Proc Natl Acad Sci U S A, 118(11). doi: 10.1073/pnas.2019071118

Schnell, A. K., Boeckle, M., Rivera, M., Clayton, N. S., & Hanlon, R. T. (2021). Cuttlefish exert self-control in a delay of gratification task. Proceedings of the Royal Society B: Biological Sciences, 288(1946), 20203161. doi: 10.1098/rspb.2020.3161

Jakuba, R. W., Williams, T., Neill, C., Costa, J. E., McHorney, R., Scott, L., Howes, B. L., Ducklow, H., Erickson, M., & Rasmussen, M. (2021). Water quality measurements in Buzzards Bay by the Buzzards Bay Coalition Baywatchers Program from 1992 to 2018. Sci Data, 8(1), 76. doi: 10.1038/s41597-021-00856-4

Lai, N. Y., Bell, J. M., & Bodznick, D. (2021). Multiple behavior-specific cancellation signals contribute to suppressing predictable sensory reafference in a cerebellum-like structure. J Exp Biol. doi: 10.1242/jeb.240143

Watson, A. R., Fuessel, J., Veseli, I., DeLongchamp, J. Z., Silva, M., Trigodet, F., Lolans, K., Shaiber, A., Fogarty, E., Quince, C., Yu, M. K., Soylev, A., Morrison, H. G., Lee, S. T. M., Rubin, D. T., Jabri, B., Louie, T., & Eren, A. M. (2021). Adaptive ecological processes and metabolic independence drive microbial colonization and resilience in the human gut. bioRxiv, 2021.2003.2002.433653. doi: 10.1101/2021.03.02.433653

Trigodet, F., Lolans, K., Fogarty, E., Shaiber, A., Morrison, H., Barreiro, L., Jabri, B., & Eren, A. M. (2021). High molecular weight DNA extraction strategies for long-read sequencing of complex metagenomes. bioRxiv, 2021.2003.2003.433801. doi: 10.1101/2021.03.03.433801

Han, X., Su, Y., White, H., O’Neill, K. M., Morgan, N. Y., Christensen, R., Potarazu, D., Vishwasrao, H. D., Xu, S., Sun, Y., Huang, S. Y., Moyle, M. W., Dai, Q., Pommier, Y., Giniger, E., Albrecht, D. R., Probst, R., & Shroff, H. (2021). A polymer index-matched to water enables diverse applications in fluorescence microscopy. Lab Chip. doi: 10.1039/d0lc01233e

Moyle, M. W., Barnes, K. M., Kuchroo, M., Gonopolskiy, A., Duncan, L. H., Sengupta, T., Shao, L., Guo, M., Santella, A., Christensen, R., Kumar, A., Wu, Y., Moon, K. R., Wolf, G., Krishnaswamy, S., Bao, Z., Shroff, H., Mohler, W. A., & Colón-Ramos, D. A. (2021). Structural and developmental principles of neuropil assembly in C. elegans. NATURE. doi: 10.1038/s41586-020-03169-5

Román-Vendrell, C., Medeiros, A. T., Sanderson, J. B., Jiang, H., Bartels, T., & Morgan, J. R. (2021). Effects of Excess Brain-Derived Human α-Synuclein on Synaptic Vesicle Trafficking. Frontiers in Neuroscience, 15, 639414. doi: 10.3389/fnins.2021.639414

Jiang, H., Costello, J. H., & Colin, S. P. (2021). Fluid dynamics and efficiency of colonial swimming via multijet propulsion at intermediate Reynolds numbers. PHYSICAL REVIEW FLUIDS, 6(1). doi: 10.1103/PhysRevFluids.6.013103

Messenger, S., Lloret, J., Galloway, J. N., & Giblin, A. (2021). Identifying and assessing effectiveness of alternative low-effort nitrogen footprint reductions in small research institutions. ENVIRONMENTAL RESEARCH LETTERS. doi: 10.1088/1748-9326/abd9f6

Möbius, W., Hümmert, S., Ruhwedel, T., Kuzirian, A., & Gould, R. (2021). New Species Can Broaden Myelin Research: Suitability of Little Skate, Leucoraja erinacea. Life, 11(2). doi: 10.3390/life11020136

Fortunato, C. S., Butterfield, D. A., Larson, B., Lawrence-Slavas, N., Algar, C. K., Zeigler Allen, L., Holden, J. F., Proskurowski, G., Reddington, E., Stewart, L. C., Topçuoğlu, B. D., Vallino, J. J., & Huber, J. A. (2021). Seafloor incubation experiment with deep-sea hydrothermal vent fluid reveals effect of pressure and lag time on autotrophic microbial communities. Appl Environ Microbiol. doi: 10.1128/AEM.00078-21

Gerbich, T. M., & Gladfelter, A. S. (2021). Moving beyond disease to function: Physiological roles for polyglutamine-rich sequences in cell decisions. Curr Opin Cell Biol, 69, 120-126. doi: 10.1016/

Richter-Heitmann, T., Hofner, B., Krah, F. S., Sikorski, J., Wust, P. K., Bunk, B., Huang, S. X., Regan, K. M., Berner, D., Boeddinghaus, R. S., Marhan, S., Prati, D., Kandeler, E., Overmann, J., & Friedrich, M. W. (2020). Stochastic Dispersal Rather Than Deterministic Selection Explains the Spatio-Temporal Distribution of Soil Bacteria in a Temperate Grassland. FRONTIERS IN MICROBIOLOGY, 11. doi: 10.3389/fmicb.2020.01391

Chan, K. M. C., Arthur, A. L., Morstein, J., Jin, M. Y., Bhat, A., Schlesinger, D., Son, S., Stevens, D. A., Drubin, D. G., & Fletcher, D. A. (2021). Evolutionarily related small viral fusogens hijack distinct but modular actin nucleation pathways to drive cell-cell fusion. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 118(1). doi: 10.1073/pnas.2007526118

de Vogel, F. A., Schlundt, C., Stote, R. E., Ratto, J. A., & Amaral-Zettler, L. A. (2021). Comparative Genomics of Marine Bacteria from a Historically Defined Plastic Biodegradation Consortium with the Capacity to Biodegrade Polyhydroxyalkanoates. Microorganisms, 9(1), 186. doi: 10.3390/microorganisms9010186

Teske, A., Wegener, G., Chanton, J. P., White, D., MacGregor, B., Hoer, D., de Beer, D., Zhuang, G., Saxton, M. A., Joye, S. B., Lizarralde, D., Soule, S. A., & Ruff, S. E. (2021). Microbial Communities Under Distinct Thermal and Geochemical Regimes in Axial and Off-Axis Sediments of Guaymas Basin (Vol. 12, pp. 110).

Peredo, E. L., & Simmons, S. (2021). Leaf-FISH: In Situ Hybridization Method for Visualizing Bacterial Taxa on Plant Surfaces. Methods Mol Biol, 2246, 111-128. doi: 10.1007/978-1-0716-1115-9_8

Morris, S. L., Tsai, M. Y., Aloe, S., Bechberger, K., König, S., Morfini, G., & Brady, S. T. (2020). Defined Tau Phosphospecies Differentially Inhibit Fast Axonal Transport Through Activation of Two Independent Signaling Pathways. Frontiers in Molecular Neuroscience, 13, 610037. doi: 10.3389/fnmol.2020.610037

Li, H., Bölscher, T., Winnick, M., Tfaily, M. M., Cardon, Z. G., & Keiluweit, M. (2021). Simple Plant and Microbial Exudates Destabilize Mineral-Associated Organic Matter via Multiple Pathways. ENVIRONMENTAL SCIENCE & TECHNOLOGY(acs.est.0c04592). doi: 10.1021/acs.est.0c04592

Sivaguru, M., Todorov, L. G., Fouke, C. E., Munro, C. M. O., Fouke, K. W., Fouke, K. E., Baughman, M. E., & Fouke, B. W. (2021). Corals regulate the distribution and abundance of Symbiodiniaceae and biomolecules in response to changing water depth and sea surface temperature. Sci Rep, 11(1), 2230. doi: 10.1038/s41598-021-81520-0

Nowell, R. W., Wilson, C. G., Almeida, P., Schiffer, P. H., Fontaneto, D., Becks, L., Rodriguez, F., Arkhipova, I. R., & Barraclough, T. G. (2021). Evolutionary dynamics of transposable elements in bdelloid rotifers. Elife, 10. doi: 10.7554/eLife.63194