Recent MBL Publications

As of January 22, 2021

Lu, X., Liu, Z., Zhao, F., & Tang, J. (2020). Comparison of total emitted solar-induced chlorophyll fluorescence (SIF) and top-of-canopy (TOC) SIF in estimating photosynthesis. REMOTE SENSING OF ENVIRONMENT, 251(ARTN 112083). doi: 10.1016/j.rse.2020.112083

Ishii, H., & Tani, T. (2020). Dynamic organization of cortical actin filaments during the ooplasmic segregation of ascidian Ciona eggs. Mol Biol Cell, mbcE20010083. doi: 10.1091/mbc.E20-01-0083

Shaiber, A., Willis, A. D., Delmont, T. O., Roux, S., Chen, L. X., Schmid, A. C., Yousef, M., Watson, A. R., Lolans, K., Esen, Ö. C., Lee, S. T. M., Downey, N., Morrison, H. G., Dewhirst, F. E., Mark Welch, J. L., & Eren, A. M. (2020). Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome. Genome Biology, 21(1). doi: 10.1186/s13059-020-02195-w

Vallino, J. J., & Tsakalakis, I. (2020). Phytoplankton Temporal Strategies Increase Entropy Production in a Marine Food Web Model. Entropy (Basel), 22(11). doi: 10.3390/e22111Chan, K. M. C., Arthur, A. L., Morstein, J., Jin, M., Bhat, A., Schlesinger, D., Son, S., Stevens, D. A., Drubin, D. G., & Fletcher, D. A. (2021). Evolutionarily related small viral fusogens hijack distinct but modular actin nucleation pathways to drive cell-cell fusion. Proc Natl Acad Sci U S A, 118(1). doi: 10.1073/pnas.2007526118

Hirst, W. G., Kiefer, C., Abdosamadi, M. K., Schäffer, E., & Reber, S. (2020). In Vitro Reconstitution and Imaging of Microtubule Dynamics by Fluorescence and Label-free Microscopy. STAR Protoc, 1(3), 100177. doi: 10.1016/j.xpro.2020.100177

Reusch, S., Biswas, A., Hirst, W. G., & Reber, S. (2020). Affinity Purification of Label-free Tubulins from Xenopus Egg Extracts. STAR Protoc, 1(3), 100151. doi: 10.1016/j.xpro.2020.100151

Banks, S. M. L., Medeiros, A. T., Sousa, R., Lafer, E. M., & Morgan, J. R. (2021). Chaperone proteins as ameliorators of alpha-synuclein-induced synaptic pathologies: insights into Parkinson’s disease. Neural Regen Res, 16(6), 1198-1199. doi: 10.4103/1673-5374.300431

de Mendoza, A., Poppe, D., Buckberry, S., Pflueger, J., Albertin, C. B., Daish, T., Bertrand, S., de la Calle-Mustienes, E., Gómez-Skarmeta, J. L., Nery, J. R., Ecker, J. R., Baer, B., Ragsdale, C. W., Grützner, F., Escriva, H., Venkatesh, B., Bogdanovic, O., & Lister, R. (2021). The emergence of the brain non-CpG methylation system in vertebrates. Nat Ecol Evol. doi: 10.1038/s41559-020-01371-2

Gemmell, B. J., Du Clos, K. T., Colin, S. P., Sutherland, K. R., & Costello, J. H. (2021). The most efficient metazoan swimmer creates a ‘virtual wall’ to enhance performance. Proc Biol Sci, 288(1942), 20202494. doi: 10.1098/rspb.2020.2494

Ishihara, K., Decker, F., Caldas, P., Pelletier, J. F., Loose, M., Brugués, J., & Mitchison, T. J. (2021). Spatial Variation of Microtubule Depolymerization in Large Asters. Molecular Biology of the Cell, mbce20110723. doi: 10.1091/mbc.e20-11-0723

Subramanian, S., & Jonas, E. A. (2021). Mitochondria: Powerhouses of Presynaptic Plasticity. The Journal of Physiology. doi: 10.1113/jp281040

Liu, X. J. A., Pold, G., Domeignoz-Horta, L. A., Geyer, K. M., Caris, H., Nicolson, H., Kemner, K. M., Frey, S. D., Melillo, J. M., & DeAngelis, K. M. (2021). Soil aggregate-mediated microbial responses to long-term warming. SOIL BIOLOGY & BIOCHEMISTRY, 152(ARTN 108055). doi: 10.1016/j.soilbio.2020.108055

Eren, A. M., Kiefl, E., Shaiber, A., Veseli, I., Miller, S. E., Schechter, M. S., Fink, I., Pan, J. N., Yousef, M., Fogarty, E. C., Trigodet, F., Watson, A. R., Esen, Ö. C., Moore, R. M., Clayssen, Q., Lee, M. D., Kivenson, V., Graham, E. D., Merrill, B. D., Karkman, A., Blankenberg, D., Eppley, J. M., Sjödin, A., Scott, J. J., Vázquez-Campos, X., McKay, L. J., McDaniel, E. A., Stevens, S. L. R., Anderson, R. E., Fuessel, J., Fernandez-Guerra, A., Maignien, L., Delmont, T. O., & Willis, A. D. (2021). Community-led, integrated, reproducible multi-omics with anvi’o. Nat Microbiol, 6(1), 3-6. doi: 10.1038/s41564-020-00834-3

Hu, S., Anastassov, I. A., Kreitzer, M. A., Slaughter, M. M., & Chappell, R. L. (2020). A dark decrement for enhanced dynamic sensitivity of retinal photoreceptors. Vision Res, 180, 80-86. doi: 10.1016/j.visres.2020.12.005

Vakhrusheva, O. A., Mnatsakanova, E. A., Galimov, Y. R., Neretina, T. V., Gerasimov, E. S., Naumenko, S. A., Ozerova, S. G., Zalevsky, A. O., Yushenova, I. A., Rodriguez, F., Arkhipova, I. R., Penin, A. A., Logacheva, M. D., Bazykin, G. A., & Kondrashov, A. S. (2020). Genomic signatures of recombination in a natural population of the bdelloid rotifer Adineta vaga. Nat Commun, 11(1), 6421. doi: 10.1038/s41467-020-19614-y

Geisterfer, Z. M., Oakey, J., & Gatlin, J. C. (2020). Microfluidic encapsulation of Xenopus laevis cell-free extracts using hydrogel photolithography. STAR Protoc, 1(3), 100221. doi: 10.1016/j.xpro.2020.100221

Yu, H., Lu, S., Gasior, K., Singh, D., Vazquez-Sanchez, S., Tapia, O., Toprani, D., Beccari, M. S., Yates, J. R., Da Cruz, S., Newby, J. M., Lafarga, M., Gladfelter, A. S., Villa, E., & Cleveland, D. W. (2020). HSP70 chaperones RNA-free TDP-43 into anisotropic intranuclear liquid spherical shells. SCIENCE. doi: 10.1126/science.abb4309

Souza, F. F. C., Mathai, P. P., Pauliquevis, T., Balsanelli, E., Pedrosa, F. O., Souza, E. M., Baura, V. A., Monteiro, R. A., Cruz, L. M., Souza, R. A. F., Andreae, M. O., Barbosa, C. G. G., de Angelis, I. H., Sánchez-Parra, B., Pӧhlker, C., Weber, B., Ruff, E., Reis, R. A., Godoi, R. H. M., Sadowsky, M. J., & Huergo, L. F. (2020). Influence of seasonality on the aerosol microbiome of the Amazon rainforest. Sci Total Environ, 760, 144092. doi: 10.1016/j.scitotenv.2020.144092

Lu, X., Liu, Z., Zhao, F., & Tang, J. (2020). Comparison of total emitted solar-induced chlorophyll fluorescence (SIF) and top-of-canopy (TOC) SIF in estimating photosynthesis. REMOTE SENSING OF ENVIRONMENT, 251(ARTN 112083). doi: 10.1016/j.rse.2020.112083

Ishii, H., & Tani, T. (2020). Dynamic organization of cortical actin filaments during the ooplasmic segregation of ascidian Ciona eggs. Mol Biol Cell, mbcE20010083. doi: 10.1091/mbc.E20-01-0083

Shaiber, A., Willis, A. D., Delmont, T. O., Roux, S., Chen, L. X., Schmid, A. C., Yousef, M., Watson, A. R., Lolans, K., Esen, Ö. C., Lee, S. T. M., Downey, N., Morrison, H. G., Dewhirst, F. E., Mark Welch, J. L., & Eren, A. M. (2020). Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome. Genome Biology, 21(1). doi: 10.1186/s13059-020-02195-w

Vallino, J. J., & Tsakalakis, I. (2020). Phytoplankton Temporal Strategies Increase Entropy Production in a Marine Food Web Model. Entropy (Basel), 22(11). doi: 10.3390/e22111249

Krueger, J. N., Wilmot, J. H., Teratani-Ota, Y., Puhger, K. R., Nemes, S. E., Crestani, A. P., Lafreniere, M. M., & Wiltgen, B. J. (2020). Amnesia for context fear is caused by widespread disruption of hippocampal activity. Neurobiology of Learning and Memory, 175. doi: 10.1016/j.nlm.2020.107295

Banks, S. L., Medeiros, A., Sousa, R., Lafer, E., & Morgan, J. (2021). Chaperone proteins as ameliorators of α-synuclein-induced synaptic pathologies: insights into Parkinson’s disease. Neural Regen Res, 16(6), 1198-1198. doi: 10.4103/1673-5374.300431

Shaidani, N. I., McNamara, S., Wlizla, M., & Horb, M. E. (2020). Obtaining Xenopus laevis Eggs. Cold Spring Harb Protoc. doi: 10.1101/pdb.prot106203

Shaidani, N. I., McNamara, S., Wlizla, M., & Horb, M. E. (2020). Obtaining Xenopus laevis Embryos. Cold Spring Harb Protoc. doi: 10.1101/pdb.prot106211

Bruce, H. S., & Patel, N. H. (2020). Knockout of crustacean leg patterning genes suggests that insect wings and body walls evolved from ancient leg segments. Nature Ecology & Evolution, 4(12), 1703-1712. doi: 10.1038/s41559-020-01349-0

Kennedy, E. B. L., Buresch, K. C., Boinapally, P., & Hanlon, R. T. (2020). Octopus arms exhibit exceptional flexibility. SCIENTIFIC REPORTS, 10(1). doi: 10.1038/s41598-020-77873-7

Xu, N. W., Townsend, J. P., Costello, J. H., Colin, S. P., Gemmell, B. J., & Dabiri, J. O. (2020). Field Testing of Biohybrid Robotic Jellyfish to Demonstrate Enhanced Swimming Speeds. Biomimetics (Basel), 5(4). doi: 10.3390/biomimetics5040064

Sleight, V. A., & Gillis, J. A. (2020). Embryonic origin and serial homology of gill arches and paired fins in the skate, Leucoraja erinacea. Elife, 9. doi: 10.7554/eLife.60635

Woods, B. L., & Gladfelter, A. S. (2020). The state of the septin cytoskeleton from assembly to function. Curr Opin Cell Biol, 68, 105-112. doi: 10.1016/j.ceb.2020.10.007

Wang, L., Lin, Z., Liu, S., Fu, D., Li, Z., Luo, Q., Tang, J., Chen, Z., He, N., & Wang, Y. (2020). The effect of extracellular electron transfer on arsenic speciation transformation in a soil bioelectrochemical system. SOIL & TILLAGE RESEARCH, 204(ARTN 104723). doi: 10.1016/j.still.2020.104723

Furman, B. L. S., Cauret, C. M. S., Knytl, M., Song, X. Y., Premachandra, T., Ofori-Boateng, C., Jordan, D. C., Horb, M. E., & Evans, B. J. A frog with three sex chromosomes that co-mingle together in nature: Xenopus tropicalis has a degenerate W and a Y that evolved from a Z chromosome. PLOS Genetics, 16(11), e1009121-e1009121. doi: 10.1371/journal.pgen.1009121

Arkhipova, I. R. (2020). Metagenome Proteins and Database Contamination. mSphere, 5(6). doi: 10.1128/mSphere.00854-20

Finzi, A. C., Giasson, M. A., Plotkin, A. A. B., Aber, J. D., Boose, E. R., Davidson, E. A., Dietze, M. C., Ellison, A. M., Frey, S. D., Goldman, E., Keenan, T. F., Melillo, J. M., Munger, J. W., Nadelhoffer, K. J., Ollinger, S., Orwig, D. A., Pederson, N., Richardson, A. D., Savage, K., Tang, J., Thompson, J. R., Williams, C. A., Wofsy, S. C., Zhou, Z., & Foster, D. R. (2020). Carbon budget of the Harvard Forest Long-Term Ecological Research site: pattern, process, and response to global change. ECOLOGICAL MONOGRAPHS (ARTN e01423). doi: 10.1002/ecm.1423

Casler, J. C., Zajac, A. L., Valbuena, F. M., Sparvoli, D., Jeyifous, O., Turkewitz, A. P., Horne-Badovinac, S., Green, W. N., & Glick, B. S. (2020). ESCargo: a regulatable fluorescent secretory cargo for diverse model organisms. Mol Biol Cell, mbcE20090591. doi: 10.1091/mbc.E20-09-0591

Tran, M. T., & Oldenbourg, R. (2020). An experimental method to characterize the relationship between aperture image and ray directions in microscope optics. Microsc Res Tech. doi: 10.1002/jemt.23625

Eugster, W., DelSontro, T., Shaver, G. R., & Kling, G. W. (2020). Interannual, summer, and diel variability of CH4 and CO2 effluxes from Toolik Lake, Alaska, during the ice-free periods 2010-2015. Environ Sci Process Impacts. doi: 10.1039/d0em00125b

Colin, S. P., Costello, J. H., Sutherland, K. R., Gemmell, B. J., Dabiri, J. O., & Du Clos, K. T. (2020). The role of suction thrust in the metachronal paddles of swimming invertebrates. Sci Rep, 10(1), 17790. doi: 10.1038/s41598-020-74745-y

Shopa, M., Shopa, Y., Shribak, M., Kostenyukova, E., Pritula, I., & Bezkrovnaya, O. (2020). Polarimetric studies of L-arginine-doped potassium dihydrogen phosphate single crystals. JOURNAL OF APPLIED CRYSTALLOGRAPHY, 53, 1257-1265. doi: 10.1107/S1600576720010870

Chung, J. K., Huang, W. Y. C., Carbone, C. B., Nocka, L. M., Parikh, A. N., Vale, R. D., & Groves, J. T. (2020). Coupled Membrane Lipid Miscibility and Phosphotyrosine-Driven Protein Condensation Phase Transitions. Biophys J. doi: 10.1016/j.bpj.2020.09.017

Katz, H. R., Fouke, K. E., Losurdo, N. A., & Morgan, J. R. (2020). Recovery of Burrowing Behavior After Spinal Cord Injury in the Larval Sea Lamprey. The Biological Bulletin, 000-000. doi: 10.1086/711365

Mukherjee, S., Chaturvedi, P., Rankin, S. A., Fish, M. B., Wlizla, M., Paraiso, K. D., MacDonald, M., Chen, X. T., Weirauch, M. T., Blitz, I. L., Cho, K. W. Y., & Zorn, A. M. (2020). Sox17 and beta-catenin co-occupy Wnt-responsive enhancers to govern the endoderm gene regulatory network. Elife, 9. doi: 10.7554/eLife.58029

Biswas, R., Sonenshein, A. L., & Belitsky, B. R. (2020). Role of GlnR in Controlling Expression of Nitrogen Metabolism Genes in Listeria monocytogenes. Journal of Bacteriology, 202(19). doi: 10.1128/JB.00209-20

Zattara, E. E., & Özpolat, B. D. (2021). Quantifying Cell Proliferation During Regeneration of Aquatic Worms. Methods in Molecular Biology (pp. 163-180): Springer US.

Jiao, F., Cannon, K. S., Lin, Y. C., Gladfelter, A. S., & Scheuring, S. (2020). The hierarchical assembly of septins revealed by high-speed AFM. Nat Commun, 11(1), 5062. doi: 10.1038/s41467-020-18778-x

Sulerud, T., Sami, A. B., Li, G., Kloxin, A., Oakey, J., & Gatlin, J. (2020). Microtubule-dependent pushing forces contribute to long-distance aster movement and centration in Xenopus laevis egg extracts. Mol Biol Cell, mbcE20010088. doi: 10.1091/mbc.E20-01-0088